title: Diabatic Population Matrix Formalism for Performing Molecular Mechanics Style Simulations with Multiple Electronic States.
abstract: An accurate description of nonbonded interactions is important in investigating dynamics of molecular systems. In many situations, fixed point charge models are successfully applied to explaining various chemical phenomena. However, these models with conventional formulations will not be appropriate in elucidating the detailed dynamics during nonadiabatic events. This is mainly because the chemical properties of any molecule, especially its electronic populations, significantly change with respect to molecular distortions in the vicinity of the surface crossing. To overcome this issue in molecular simulations yet within the framework of the fixed point charge model, we define a diabatic electronic population matrix and substitute it for the conventional adiabatic partial charges. We show that this matrix can be readily utilized toward attaining more reliable descriptions of Coulombic interactions, in combination with the interpolation formalism for obtaining the intramolecular interaction potential. We demonstrate how the mixed formalism with the diabatic charges and the interpolation can be applied to molecular simulations by conducting adiabatic and nonadiabatic molecular dynamics trajectory calculations of the green fluorescent protein chromophore anion in aqueous environment.
authors.affiliation: Center for Self-Assembly and Complexity, Institute for Basic Science (IBS) , Pohang 790-784, Korea.|Department of Chemistry, Pohang University of Science and Technology (POSTECH) , Pohang 790-784, Korea.
authors.forename: Jae Woo
authors.initials: JW
authors.lastname: Park
authors.affiliation: Center for Self-Assembly and Complexity, Institute for Basic Science (IBS) , Pohang 790-784, Korea.|Department of Chemistry, Pohang University of Science and Technology (POSTECH) , Pohang 790-784, Korea.
authors.forename: Young Min
authors.initials: YM
authors.lastname: Rhee