title: ROCK2 and MYLK variants under hypobaric hypoxic environment of high altitude associate with high altitude pulmonary edema and adaptation.
abstract: OBJECTIVE
  To date, a major class of kinases, serine-threonine kinase, has been scantly investigated in stress-induced rare, fatal (if not treated early), and morbid disorder, high altitude pulmonary edema (HAPE). This study examined three major serine-threonine kinases, ROCK2, MYLK, and JNK1, along with six other genes, tyrosine hydroxylase, G-protein subunits GNA11 and GNB3, and alpha1 adrenergic receptor isoforms 1A, 1B, and 1D as candidate gene markers of HAPE and adaptation.
  
  
  METHODS
  For this, 57 variants across these nine genes were genotyped in HAPE patients (n=225), HAPE controls (n=210), and highlanders (n=259) by Sequenom MS (TOF)-based MassARRAY® platform using iPLEX™ Gold technology. In addition, to study the gene expression, quantitative real-time polymerase chain reaction was performed in human peripheral blood mononuclear cells of the three study groups.
  
  
  RESULTS
  A significant association was observed for C allele (ROCK2 single-nucleotide polymorphism, rs10929728) with HAPE (P=0.03) and C, T, and A alleles (MYLK single-nucleotide polymorphisms, rs11717814, rs40305, and rs820336) with both HAPE and adaptation (P=0.001, P=0.006, and P=0.02, respectively). ROCK2 88 kb GGGTTGGT haplotype was associated with lower risk of HAPE (P=0.0009). MYLK 7 kb haplotype CTA, composed of variant alleles, was associated with higher risk of HAPE (P=0.0006) and lower association with adaptation (P=1E-06), whereas haplotype GCG, composed of wild-type alleles, was associated with lower risk of HAPE (P=0.001) and higher association with adaptation (P=1E-06). Haplotype-haplotype and gene-gene interactions demonstrated a correlation in working of ROCK2 and MYLK.
  
  
  CONCLUSIONS
  The data suggest the association of ROCK2 with HAPE and MYLK with HAPE and adaptation in Indian population. The outcome has provided new insights into the physiology of HAPE and adaptation.
authors.affiliation: Functional Genomics Unit, CSIR-Institute of Genomics and Integrative Biology, Delhi, India ; Department of Biotechnology, University of Pune, Ganeshkhind, Pune, Maharashtra, India.
authors.forename: Priyanka
authors.initials: P
authors.lastname: Pandey
authors.affiliation: Functional Genomics Unit, CSIR-Institute of Genomics and Integrative Biology, Delhi, India ; Department of Medicine, SNM Hospital, Leh, Ladakh, Jammu and Kashmir, India.
authors.forename: Ghulam
authors.initials: G
authors.lastname: Mohammad
authors.affiliation: Functional Genomics Unit, CSIR-Institute of Genomics and Integrative Biology, Delhi, India ; Department of Biotechnology, University of Pune, Ganeshkhind, Pune, Maharashtra, India.
authors.forename: Yogendra
authors.initials: Y
authors.lastname: Singh
authors.affiliation: Functional Genomics Unit, CSIR-Institute of Genomics and Integrative Biology, Delhi, India ; Department of Biotechnology, University of Pune, Ganeshkhind, Pune, Maharashtra, India.
authors.forename: M A
authors.initials: MA
authors.lastname: Qadar Pasha
keywords: MYLK; ROCK2; SNP; adaptation; high altitude pulmonary edema; hypobaric hypoxia