title: Tips and Tricks for Successful Application of Statistical Methods to Biological Data.
abstract: This chapter discusses experimental design and use of statistics to describe characteristics of data (descriptive statistics) and inferential statistics that test the hypothesis posed by the investigator. Inferential statistics, based on probability distributions, depend upon the type and distribution of the data. For data that are continuous, randomly and independently selected, as well as normally distributed more powerful parametric tests such as Student's t test and analysis of variance (ANOVA) can be used. For non-normally distributed or skewed data, transformation of the data (using logarithms) may normalize the data allowing use of parametric tests. Alternatively, with skewed data nonparametric tests can be utilized, some of which rely on data that are ranked prior to statistical analysis. Experimental designs and analyses need to balance between committing type 1 errors (false positives) and type 2 errors (false negatives). For a variety of clinical studies that determine risk or benefit, relative risk ratios (random clinical trials and cohort studies) or odds ratios (case-control studies) are utilized. Although both use 2 × 2 tables, their premise and calculations differ. Finally, special statistical methods are applied to microarray and proteomics data, since the large number of genes or proteins evaluated increase the likelihood of false discoveries. Additional studies in separate samples are used to verify microarray and proteomic data. Examples in this chapter and references are available to help continued investigation of experimental designs and appropriate data analysis.
authors.affiliation: Division of Basic Biomedical Sciences, Sanford School of Medicine, The University of South Dakota, 414 E. Clark Street, Vermillion, SD, 57069, USA. Evelyn.Schlenker@usd.edu.
authors.forename: Evelyn
authors.initials: E
authors.lastname: Schlenker
mesh_terms: D000704:Analysis of Variance; D000818:Animals; D035843:Biomedical Research / Q000706:statistics & numerical data*; D003627:Data Interpretation, Statistical; D020869:Gene Expression Profiling / Q000706:statistics & numerical data; D006801:Humans; D015233:Models, Statistical; D016017:Odds Ratio; D020411:Oligonucleotide Array Sequence Analysis / Q000706:statistics & numerical data; D011336:Probability; D040901:Proteomics / Q000706:statistics & numerical data; D015203:Reproducibility of Results; D018709:Statistics, Nonparametric
keywords: Descriptive statistic s; Microarray studies; Nonparametric tests; Parametric test s; Type 1 and type 2 errors