title: Genotypic Diversity and Population Structure of Vibrio vulnificus Strains Isolated in Taiwan and Korea as Determined by Multilocus Sequence Typing.
abstract: The genetic diversity and population structure of Vibrio vulnificus isolates from Korea and Taiwan were investigated using PCR-based assays targeting putative virulence-related genes and multilocus sequence typing (MLST). BOX-PCR genomic fingerprinting identified 52 unique genotypes in 84 environmental and clinical V. vulnificus isolates. The majority (> 50%) of strains had pathogenic genotypes for all loci tested; moreover, many environmental strains had pathogenic genotypes. Although significant (p < 0.05) inter-relationships among the genotypes were observed, the association between genotype and strain source (environmental or clinical) was not significant, indicating that genotypic characteristics alone are not sufficient to predict the isolation source or the virulence of a given V. vulnificus strain and vice versa. MLST revealed 23-35 allelic types per locus analyzed, resulting in a total of 44 unique sequence types (STs). Two major monophyletic groups (lineages A and B) corresponding to the two known lineages of V. vulnificus were observed; lineage A had six STs that were exclusively environmental, whereas lineage B had STs from both environmental and clinical sources. Pathogenic and nonpathogenic genotypes predominated in MLST lineages B and A, respectively. In addition, V. vulnificus was shown to be in linkage disequilibrium (p < 0.05), although two different recombination tests (PHI and Sawyer's tests) detected significant evidence of recombination. Tajima's D test also indicated that V. vulnificus might be comprised of recently sub-divided lineages. These results suggested that the two lineages revealed by MLST correspond to two distinct ecotypes of V. vulnificus.
authors.affiliation: Institute of Environmental Sciences and Department of Environmental Sciences, Hankuk University of Foreign Studies, Yong-In, Korea.
authors.forename: Hye-Jin
authors.initials: HJ
authors.lastname: Kim
authors.affiliation: Institute of Environmental Sciences and Department of Environmental Sciences, Hankuk University of Foreign Studies, Yong-In, Korea.|Solana Informatics, San Diego, CA, United States of America.
authors.forename: Jae-Chang
authors.initials: JC
authors.lastname: Cho
mesh_terms: D016172:DNA Fingerprinting; D014644:Genetic Variation; D005828:Genetics, Population; D006801:Humans; D007723:Korea; D015810:Linkage Disequilibrium; D058885:Multilocus Sequence Typing; D010802:Phylogeny; D012335:RNA, Ribosomal / Q000235:genetics; D056910:Republic of Korea; D017747:Seafood / Q000382:microbiology; D017422:Sequence Analysis, DNA; D013624:Taiwan; D014735:Vibrio Infections / Q000235:genetics* / Q000382:microbiology; D041261:Vibrio vulnificus / Q000235:genetics* / Q000472:pathogenicity
chemical_list: D012335:RNA, Ribosomal