title: Relative Free Energies for Hydration of Monovalent Ions from QM and QM/MM Simulations.
abstract: Methods directly evaluating the hydration structure and thermodynamics of physiologically relevant cations (Na(+), K(+), Cl(-), etc.) have wide ranging applications in the fields of inorganic, physical, and biological chemistry. All-atom simulations based on accurate potential energy surfaces appear to offer a viable option for assessing the chemistry of ion solvation. Although MD and free energy simulations of ion solvation with classical force fields have proven their usefulness, a number of challenges still remain. One of them is the difficulty of force field benchmarking and validation against structural and thermodynamic data obtained for a condensed phase. Hybrid quantum mechanical/molecular mechanical (QM/MM) models combined with sampling algorithms have the potential to provide an accurate solvation model and to incorporate the effects from the surrounding, which is often missing in gas-phase ab initio computations. Herein, we report the results from QM/MM free energy simulations of Na(+)/K(+) and Cl(-)/Br(-) hydration where we simultaneously characterized the relative thermodynamics of ion solvation and changes in the solvation structure. The Flexible Inner Region Ensemble Separator (FIRES) method was used to impose a spatial separation between QM region and the outer sphere of solvent molecules treated with the CHARMM27 force field. FEP calculations based on QM/MM simulations utilizing the CHARMM/deMon2k interface were performed with different basis set combinations for K(+)/Na(+) and Cl(-)/Br(-) perturbations to establish the dependence of the computed free energies on the basis set level. The dependence of the computed relative free energies on the size of the QM and MM regions is discussed. The current methodology offers an accurate description of structural and thermodynamic aspects of the hydration of alkali and halide ions in neat solvents and can be used to obtain thermodynamic data on ion solvation in condensed phase along with underlying structural properties of the ion-solvent system.
authors.affiliation: Institute for Biocomplexity and Informatics, Department of Biological Sciences, The University of Calgary , 2500 University Drive, Calgary, Alberta, Canada T2N 1N4.
authors.forename: Bogdan
authors.initials: B
authors.lastname: Lev
authors.affiliation: Department of Biochemistry and Molecular Biology, Gordon Center for Integrative Sciences, The University of Chicago , 929 East 57th Street, Chicago, Illinois 60637, United States of America.
authors.forename: Benoît
authors.initials: B
authors.lastname: Roux
authors.affiliation: Institute for Biocomplexity and Informatics, Department of Biological Sciences, The University of Calgary , 2500 University Drive, Calgary, Alberta, Canada T2N 1N4.
authors.forename: Sergei Yu
authors.initials: SY
authors.lastname: Noskov