title: A Configuration Interaction Picture for a Molecular Environment Using Localized Molecular Orbitals: The Excited States of Retinal Proteins.
abstract: Electronic excitations of chromophores in proteins and solutions are associated with the electronic response of the molecular environment. The underlying interactions are important origins of solvatochromism. We performed large-scale configuration interaction singles (CIS) calculations (up to 1000 atoms) for retinal chromophores in proteins and methanol solution, in which one-electron processes (polarization and charge-transfer effects of the environment) are included. The present approach also improved the electrostatic potential, as compared to that described by a molecular mechanics (MM) force field. The CIS results were combined with the symmetry adapted cluster (SAC)-CI result using our own N-layer integrated molecular orbital molecular mechanics (ONIOM) method. As compared to the MM description, the CIS reduces the calculated excitation energy by 0.1-0.3 eV and also improves the relative excitation energies among retinal proteins. We applied our localized molecular orbital (LMO) transformation scheme to analyze the CI wave functions. The result clarified the contributions of the amino acids. In bacteriorhodopsin, Tyr185 contributes intermolecular CT excitations. The radial distribution of amino acids' contributions to the CI wave function was also analyzed. The results of the analysis are useful not only for understanding the molecular interactions and the role of amino acids in color tuning, but also for providing insight into the structure of the excited-state wave function for the molecular environment. An excitation-energy decomposition analysis also supported the results of the excited-state wave functions.
authors.affiliation: Fukui Institute for Fundamental Chemistry, Kyoto University , 34-4 Takano-Nishihiraki-cho, Sakyo-ku, Kyoto 606-8103, Japan.|Quantum Chemistry Research Institute , Kyodai Katsura Venture Plaza, Goryou Oohara 1-36, Nishikyo-ku, Kyoto 615-8245, Japan.|Institute for Molecular Science, National Institute of Natural Science , 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan.
authors.forename: Jun-Ya
authors.initials: JY
authors.lastname: Hasegawa
authors.affiliation: Department of Computational Science, Graduate School of System Informatics, Kobe University , 1-1, Rokkodai, Nada, Kobe 657-8501, Japan.
authors.forename: Kazuhiro J
authors.initials: KJ
authors.lastname: Fujimoto
authors.affiliation: Fukui Institute for Fundamental Chemistry, Kyoto University , 34-4 Takano-Nishihiraki-cho, Sakyo-ku, Kyoto 606-8103, Japan.|Institute for Molecular Science, National Institute of Natural Science , 38 Nishigo-Naka, Myodaiji, Okazaki 444-8585, Japan.
authors.forename: Tsutomu
authors.initials: T
authors.lastname: Kawatsu