title: De-novo assembly and characterization of Chlorella minutissima UTEX2341 transcriptome by paired-end sequencing and the identification of genes related to the biosynthesis of lipids for biodiesel.
abstract: Chlorella minutissima is considered to be one of the promising feedstocks for biofuels in the future. In this study, the transcriptome from the oil-rich strain UTEX2341 of C. minutissima was generated based on Illumina paired-end sequencing. Through de-novo assembly, a total of 14,905 isogenes were obtained and compacted into 6216 unigenes. A total of 80% of the unigenes were assigned with GO terms and were further subdivided into 55 sub-categories. KEGG analysis demonstrated that 37.2% of the unigenes could be accessed and mapped into 278 pathways. Interestingly, the genes that encoded key enzymes that are involved in the biosynthesis, elongation, and metabolism of fatty acids were identified, including malonyl-CoA-ACP transacylase, 3-ketoacyl-ACP synthase, 3-ketoacyl-ACP reductase, and others. Moreover, the genes that are involved in triacylglycerol (TAG) biosynthesis and metabolism were also observed. Therefore, the transcriptome analysis of C. minutissima UTEX2341 not only supplies comprehensive insight into the molecular pathway that is involved in the biosynthesis of biofuel precursors but also provides substantial valuable genomic resources to accelerate the further development and utilization of biofuels.
authors.affiliation: Engineering Research Center of Marine Biological Resource Comprehensive Utilization, Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, People's Republic of China. Electronic address: yumingjia@tio.org.cn.
authors.forename: Mingjia
authors.initials: M
authors.lastname: Yu
authors.affiliation: Engineering Research Center of Marine Biological Resource Comprehensive Utilization, Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, People's Republic of China.
authors.forename: Shanjun
authors.initials: S
authors.lastname: Yang
authors.affiliation: Engineering Research Center of Marine Biological Resource Comprehensive Utilization, Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, People's Republic of China. Electronic address: xzlin@tio.org.cn.
authors.forename: Xiangzhi
authors.initials: X
authors.lastname: Lin
mesh_terms: D001483:Base Sequence; D056804:Biofuels; D002708:Chlorella / Q000235:genetics*; D004247:DNA / Q000235:genetics; D018506:Gene Expression Regulation, Plant / Q000502:physiology*; D008055:Lipids / Q000096:biosynthesis*; D018749:RNA, Plant / Q000235:genetics / Q000378:metabolism; D059467:Transcriptome
chemical_list: D056804:Biofuels; D008055:Lipids; D018749:RNA, Plant; D004247:DNA
keywords: Chlorella minutissima UTEX2341; Fatty acids; Paired-end sequencing; TAG; Transcriptome