title: SureChEMBL: a large-scale, chemically annotated patent document database.
abstract: SureChEMBL is a publicly available large-scale resource containing compounds extracted from the full text, images and attachments of patent documents. The data are extracted from the patent literature according to an automated text and image-mining pipeline on a daily basis. SureChEMBL provides access to a previously unavailable, open and timely set of annotated compound-patent associations, complemented with sophisticated combined structure and keyword-based search capabilities against the compound repository and patent document corpus; given the wealth of knowledge hidden in patent documents, analysis of SureChEMBL data has immediate applications in drug discovery, medicinal chemistry and other commercial areas of chemical science. Currently, the database contains 17 million compounds extracted from 14 million patent documents. Access is available through a dedicated web-based interface and data downloads at: https://www.surechembl.org/.
authors.affiliation: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
authors.forename: George
authors.identifier: http://orcid.org/0000-0002-8314-7061
authors.initials: G
authors.lastname: Papadatos
authors.affiliation: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
authors.forename: Mark
authors.initials: M
authors.lastname: Davies
authors.affiliation: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
authors.forename: Nathan
authors.initials: N
authors.lastname: Dedman
authors.affiliation: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
authors.forename: Jon
authors.initials: J
authors.lastname: Chambers
authors.affiliation: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK.
authors.forename: Anna
authors.initials: A
authors.lastname: Gaulton
authors.affiliation: Digital Science, London N1 9XW, UK.
authors.forename: James
authors.initials: J
authors.lastname: Siddle
authors.affiliation: Digital Science, London N1 9XW, UK.
authors.forename: Richard
authors.initials: R
authors.lastname: Koks
authors.affiliation: NetValue Ltd, Hamilton 3240, New Zealand.
authors.forename: Sean A
authors.initials: SA
authors.lastname: Irvine
authors.affiliation: McKinsey & Company, London SW1Y 4UH, UK.
authors.forename: Joe
authors.initials: J
authors.lastname: Pettersson
authors.affiliation: Digital Science, London N1 9XW, UK n.goncharoff@digital-science.com.
authors.forename: Nicko
authors.initials: N
authors.lastname: Goncharoff
authors.affiliation: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK ahersey@ebi.ac.uk.
authors.forename: Anne
authors.initials: A
authors.lastname: Hersey
authors.affiliation: European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK john.overington@stratifiedmedical.com.
authors.forename: John P
authors.initials: JP
authors.lastname: Overington
mesh_terms: D057225:Data Mining; D062126:Databases, Chemical; D010330:Patents as Topic; D004364:Pharmaceutical Preparations / Q000737:chemistry
chemical_list: D004364:Pharmaceutical Preparations