title: On the Validation of Molecular Dynamics Simulations of Saturated and cis-Monounsaturated Phosphatidylcholine Lipid Bilayers: A Comparison with Experiment.
abstract: Molecular dynamics simulations of fully hydrated pure bilayers of four widely studied phospholipids, 1,2-dilauroyl-sn-glycero-3-phosphocholine (DLPC), 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC), 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC), and 2-oleoyl-1-palmitoyl-sn-glycero-3-phosphocholine (POPC) using a recent revision of the GROMOS96 force field are reported. It is shown that the force field reproduces the structure and the hydration of bilayers formed by each of the four lipids with high accuracy. Specifically, the solvation and the orientation of the dipole of the phosphocholine headgroup and of the ester carbonyls show that the structure of the primary hydration shell in the simulations closely matches experimental findings. This work highlights the need to reproduce a broad range of properties beyond the area per lipid, which is poorly defined experimentally, and to consider the effect of system size and sampling times well beyond those commonly used.
authors.affiliation: School of Chemistry and Molecular Biosciences and Institute for Molecular Bioscience, University of Queensland, Brisbane St Lucia, QLD 4072, Australia.
authors.forename: David
authors.initials: D
authors.lastname: Poger
authors.affiliation: School of Chemistry and Molecular Biosciences and Institute for Molecular Bioscience, University of Queensland, Brisbane St Lucia, QLD 4072, Australia.
authors.forename: Alan E
authors.initials: AE
authors.lastname: Mark