title: The Influence of Crowding Conditions on the Thermodynamic Feasibility of Metabolic Pathways.
abstract: Intracellular reactions are carried out in a crowded medium where the macromolecules occupy ∼40% of the total volume. This decrease in the available volume affects the activity of the reactants. Scaled particle theory is used for the estimation of the activity coefficients of the metabolites, and thereby for the assessment of the impact of the presence of background molecules, on the estimation of the Gibbs free energy change (ΔrG) of the reactions. The lactic acid pathway and the central carbon metabolism of Actinobacillus succinogenes for the production of succinic acid from glycerol have been used as illustrative case studies. Results suggest the importance of maintaining intracellular crowded regions to favor the feasibility of a pathway that in other circumstances would be infeasible. Moreover, the crowding conditions may change the directionality of reactions and can modify the feasible range of fluxes estimated for a metabolic system compared with those obtained at standard biological conditions.
authors.affiliation: School of Chemical Engineering and Analytical Science, University of Manchester, Manchester, UK.
authors.forename: Liliana
authors.initials: L
authors.lastname: Angeles-Martinez
authors.affiliation: School of Chemical Engineering and Analytical Science, University of Manchester, Manchester, UK. Electronic address: k.theodoropoulos@manchester.ac.uk.
authors.forename: Constantinos
authors.initials: C
authors.lastname: Theodoropoulos
mesh_terms: D000188:Actinobacillus / Q000166:cytology / Q000378:metabolism; D005240:Feasibility Studies; D005990:Glycerol / Q000378:metabolism; D006019:Glycolysis; D042541:Intracellular Space / Q000378:metabolism; D019344:Lactic Acid / Q000378:metabolism; D053858:Metabolic Networks and Pathways; D008954:Models, Biological; D019802:Succinic Acid / Q000378:metabolism; D013816:Thermodynamics
chemical_list: D019344:Lactic Acid; D019802:Succinic Acid; D005990:Glycerol