title: Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp. Pekinensis).
abstract: Previous studies have showed that the VQ motif-containing proteins in Arabidopsis thaliana and Oryza sativa play an important role in plant growth, development, and stress responses. However, little is known about the functions of the VQ genes in Brassica rapa (Chinese cabbage). In this study, we performed genome-wide identification, characterization, and expression analysis of the VQ genes in Chinese cabbage, especially under adverse environment. We identified 57 VQ genes and classified them into seven subgroups (I-VII), which were dispersedly distributed on chromosomes 1 to 10. The expansion of these genes mainly contributed to segmental and tandem duplication. Fifty-four VQ genes contained no introns and 50 VQ proteins were less than 300 amino acids in length. Quantitative real-time PCR showed that the VQ genes were differentially expressed in various tissues and during different abiotic stresses and plant hormone treatments. This study provides a comprehensive overview of Chinese cabbage VQ genes and will benefit the molecular breeding for resistance to stresses and disease, as well as further studies on the biological functions of the VQ proteins.
authors.affiliation: College of Horticulture, Gansu Agricultural University, Lanzhou 730070, China. zgy741852@126.com.
authors.forename: Gaoyuan
authors.initials: G
authors.lastname: Zhang
authors.affiliation: Shandong Key Laboratory of Greenhouse Vegetable Biology, Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences, Jinan 250100, China. wfengde@163.com.
authors.forename: Fengde
authors.initials: F
authors.lastname: Wang
authors.affiliation: Shandong Key Laboratory of Greenhouse Vegetable Biology, Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences, Jinan 250100, China. lijj0620@163.com.
authors.forename: Jingjuan
authors.initials: J
authors.lastname: Li
authors.affiliation: Shandong Key Laboratory of Greenhouse Vegetable Biology, Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences, Jinan 250100, China. dingqian87@126.com.
authors.forename: Qian
authors.initials: Q
authors.lastname: Ding
authors.affiliation: Shandong Key Laboratory of Greenhouse Vegetable Biology, Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences, Jinan 250100, China. zyh_0923@163.com.
authors.forename: Yihui
authors.initials: Y
authors.lastname: Zhang
authors.affiliation: Shandong Key Laboratory of Greenhouse Vegetable Biology, Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences, Jinan 250100, China. lihuayin1@163.com.
authors.forename: Huayin
authors.initials: H
authors.lastname: Li
authors.affiliation: College of Horticulture, Gansu Agricultural University, Lanzhou 730070, China. zjn0101@sina.com.
authors.forename: Jiannong
authors.initials: J
authors.lastname: Zhang
authors.affiliation: Shandong Key Laboratory of Greenhouse Vegetable Biology, Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Sciences, Jinan 250100, China. jianweigao3@yahoo.com.
authors.forename: Jianwei
authors.initials: J
authors.lastname: Gao
mesh_terms: D020816:Amino Acid Motifs; D000595:Amino Acid Sequence; D001937:Brassica / Q000145:classification / Q000235:genetics* / Q000378:metabolism; D002874:Chromosome Mapping; D017124:Conserved Sequence; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant; D040342:Genetic Structures; D018745:Genome, Plant; D059014:High-Throughput Nucleotide Sequencing; D008969:Molecular Sequence Data; D005810:Multigene Family; D010802:Phylogeny; D010940:Plant Proteins / Q000737:chemistry* / Q000235:genetics*; D056510:Position-Specific Scoring Matrices; D054730:Protein Interaction Domains and Motifs; D016415:Sequence Alignment; D013312:Stress, Physiological / Q000235:genetics; D059467:Transcriptome
chemical_list: D010940:Plant Proteins
keywords: Chinese cabbage; VQ motif-containing proteins; expression patterns