title: Temperature Effects on Donor-Acceptor Couplings in Peptides. A Combined Quantum Mechanics and Molecular Dynamics Study.
abstract: We report a quantum chemistry and molecular dynamics study on the temperature dependence of electronic coupling in two short model oligopeptides. Ten nanoseconds replica exchange molecular dynamics was performed on Trp-(Pro)3-Trp and Trp-(Pro)6-Trp peptides in the gas phase in combination with computation of the energy and electronic coupling for thermal hole transfer between Trp residues. The electron transfer parameters were estimated by using the semiempirical INDO/S method together with the charge fragment difference scheme. Conformational analysis of the derived trajectories revealed that the electronic coupling becomes temperature dependent when incorporating structural dynamics of the system. We demonstrate that Trp-(Pro)3-Trp, having only few degrees of freedom, results in relatively weak couplings at low and high temperature and a strong peak at 144 K, whereas the more flexible system Trp-(Pro)6-Trp shows monotonically decreased coupling. Only a few conformations with strong donor-acceptor couplings are shown to be crucial for the overall ET rates. Our results introduce the question whether the T dependence of ET coupling can also be found in large biological systems.
authors.affiliation: Barcelona Supercomputing Center, Nexus II Building, 08028 Barcelona, Spain, Institute of Computational Chemistry, University of Girona, 17071 Girona, Spain, and Institució Catalana de Recerca i Estudis Avançats, 08010 Barcelona, Spain.
authors.forename: Frank H
authors.initials: FH
authors.lastname: Wallrapp
authors.affiliation: Barcelona Supercomputing Center, Nexus II Building, 08028 Barcelona, Spain, Institute of Computational Chemistry, University of Girona, 17071 Girona, Spain, and Institució Catalana de Recerca i Estudis Avançats, 08010 Barcelona, Spain.
authors.forename: Alexander A
authors.initials: AA
authors.lastname: Voityuk
authors.affiliation: Barcelona Supercomputing Center, Nexus II Building, 08028 Barcelona, Spain, Institute of Computational Chemistry, University of Girona, 17071 Girona, Spain, and Institució Catalana de Recerca i Estudis Avançats, 08010 Barcelona, Spain.
authors.forename: Victor
authors.initials: V
authors.lastname: Guallar