title: Solvatochromic Shifts in Uracil: A Combined MD-QM/MM Study.
abstract: Uracil is a commonly occurring pyrimidine derivative found in RNA where it base pairs with adenine. Rationalizing the electronic properties of uracil in both gas phase and aqueous solution is of fundamental importance because of the significant biological role played by this molecule. This paper presents accurate predictions of the solvatochromic shifts of the lowest π → π* and n → π* vertical electronic excitation energies in uracil due to an aqueous solution. The calculations are conducted using a recently developed combined quantum mechanics/molecular mechanics (QM/MM) method, and nuclear dynamical effects are accounted for through molecular dynamics simulations. The electronic structure is described using either density functional theory employing the CAM-B3LYP exchange-correlation functional or the coupled cluster singles and approximate doubles (CC2) method. The predicted solvatochromic shifts using CAM-B3LYP/MM and CC2/MM are -0.12 ± 0.01 eV and -0.20 ± 0.01 eV, respectively, for the π → π* transition and 0.42 ± 0.03 eV and 0.43 ± 0.03 eV, respectively, for the n → π* transition. Our best estimate of the solvatochromic shifts are derived using a self-consistent polarizable model in both the MD and QM/MM simulations and are -0.29 ± 0.01 eV and 0.45 ± 0.03 eV for the π → π* and n → π* transitions, respectively. The estimate is based on CC2 with electrostatic corrections defined from CAM-B3LYP and dispersion corrections derived from CC2 model system calculations. These solvatochromic shifts are in excellent agreement with experimental data, indicating the importance of explicit inclusion of polarization effects in MD-based QM/MM methods.
authors.affiliation: Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark, and Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
authors.forename: Jógvan Magnus
authors.initials: JM
authors.lastname: Olsen
authors.affiliation: Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark, and Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
authors.forename: Kęstutis
authors.initials: K
authors.lastname: Aidas
authors.affiliation: Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark, and Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
authors.forename: Kurt V
authors.initials: KV
authors.lastname: Mikkelsen
authors.affiliation: Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, DK-5230 Odense M, Denmark, and Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
authors.forename: Jacob
authors.initials: J
authors.lastname: Kongsted