title: Metabolic Pathways for Degradation of Aromatic Hydrocarbons by Bacteria.
abstract: The aim of this review was to build an updated collection of information focused on the mechanisms and elements involved in metabolic pathways of aromatic hydrocarbons by bacteria. Enzymes as an expression of the genetic load and the type of electron acceptor available, as an environmental factor, were highlighted. In general, the review showed that both aerobic routes and anaerobic routes for the degradation of aromatic hydrocarbons are divided into two pathways. The first, named the upper pathways, entails the route from the original compound to central intermediate compounds still containing the aromatic ring but with the benzene nucleus chemically destabilized. The second, named the lower pathway, begins with ring de-aromatization and subsequent cleavage, resulting in metabolites that can be used by bacteria in the production of biomass. Under anaerobic conditions the five mechanisms of activation of the benzene ring described show the diversity of chemical reactions that can take place. Obtaining carbon and energy from an aromatic hydrocarbon molecule is a process that exhibits the high complexity level of the metabolic apparatus of anaerobic microorganisms. The ability of these bacteria to express enzymes that catalyze reactions, known only in non-biological conditions, using final electron acceptors with a low redox potential, is a most interesting topic. The discovery of phylogenetic and functional characteristics of cultivable and noncultivable hydrocarbon degrading bacteria has been made possible by improvements in molecular research techniques such as SIP (stable isotope probing) tracing the incorporation of (13)C, (15)N and (18)O into nucleic acids and proteins. Since many metabolic pathways in which enzyme and metabolite participants are still unknown, much new research is required. Therefore, it will surely allow enhancing the known and future applications in practice.
authors.affiliation: Laboratory of Biochemistry and Applied Microbiology, Institute of Biosciences, Letters and Exact Sciences (IBILCE) - São Paulo State University (Unesp), Rua Cristóvão Colombo, 2265, São José do Rio Preto, São Paulo, 15013-000, Brazil. ambos.ong@gmail.com.
authors.forename: Guillermo
authors.initials: G
authors.lastname: Ladino-Orjuela
authors.affiliation: Laboratory of Biochemistry and Applied Microbiology, Institute of Biosciences, Letters and Exact Sciences (IBILCE) - São Paulo State University (Unesp), Rua Cristóvão Colombo, 2265, São José do Rio Preto, São Paulo, 15013-000, Brazil. eleni@ibilce.unesp.br.
authors.forename: Eleni
authors.initials: E
authors.lastname: Gomes
authors.affiliation: Laboratory of Biochemistry and Applied Microbiology, Institute of Biosciences, Letters and Exact Sciences (IBILCE) - São Paulo State University (Unesp), Rua Cristóvão Colombo, 2265, São José do Rio Preto, São Paulo, 15013-000, Brazil. dasilva@ibilce.unesp.br.
authors.forename: Roberto
authors.initials: R
authors.lastname: da Silva
authors.affiliation: Institute for Biodiversity and Ecosystem Dynamics (IBED), Universiteit Van Amsterdam, 94248, Amsterdam, 1090 GE, The Netherlands. christopher.salt@student.uva.nl.
authors.forename: Christopher
authors.initials: C
authors.lastname: Salt
authors.affiliation: Institute for Biodiversity and Ecosystem Dynamics (IBED), Universiteit Van Amsterdam, 94248, Amsterdam, 1090 GE, The Netherlands. J.R.Parsons@uva.nl.
authors.forename: John R
authors.initials: JR
authors.lastname: Parsons
mesh_terms: D001419:Bacteria / Q000378:metabolism*; D001673:Biodegradation, Environmental; D006841:Hydrocarbons, Aromatic / Q000378:metabolism*; D053858:Metabolic Networks and Pathways
chemical_list: D006841:Hydrocarbons, Aromatic
keywords: Anaerobic terminal electron acceptors; Aromatic hydrocarbon-degrading bacteria; Benzoyl-CoA reductases; Biodegradation of aromatic hydrocarbons; Hydroxy-substituted aromatic carboxylic acids