title: Resistance of Undisturbed Soil Microbiomes to Ceftriaxone Indicates Extended Spectrum β-Lactamase Activity.
abstract: Emergence and spread of antibiotic resistance, and specifically resistance to third generation cephalosporins associated with extended spectrum β-lactamase (ESBL) activity, is one of the greatest epidemiological challenges of our time. In this study we addressed the impact of the third generation cephalosporin ceftriaxone on microbial activity and bacterial community composition of two physically and chemically distinct undisturbed soils in highly regulated microcosm experiments. Surprisingly, periodical irrigation of the soils with clinical doses of ceftriaxone did not affect their microbial activity; and only moderately impacted the microbial diversity (α and β) of the two soils. Corresponding slurry experiments demonstrated that the antibiotic capacity of ceftriaxone rapidly diminished in the presence of soil, and ∼70% of this inactivation could be explained by biological activity. The biological nature of ceftriaxone degradation in soil was supported by microcosm experiments that amended model Escherichia coli strains to sterile and non-sterile soils in the presence and absence of ceftriaxone and by the ubiquitous presence of ESBL genes (blaTEM, blaCTX-M, and blaOXA) in soil DNA extracts. Collectively, these results suggest that the resistance of soil microbiomes to ceftriaxone stems from biological activity and even more, from broad-spectrum β-lactamase activity; raising questions regarding the scope and clinical implications of ESBLs in soil microbiomes.
authors.affiliation: The Department of Soil and Water Sciences, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem Rehovot, Israel ; The Institute of Soil, Water and Environmental Sciences, The Volcani Center, Agricultural Research Organization Bet-Dagan, Israel.
authors.forename: Joao
authors.initials: J
authors.lastname: Gatica
authors.affiliation: Department of Civil and Environmental Engineering, University of Hawaii at Manoa Hawaii, HI, USA.
authors.forename: Kun
authors.initials: K
authors.lastname: Yang
authors.affiliation: Department of Civil and Environmental Engineering, University of Hawaii at Manoa Hawaii, HI, USA.
authors.forename: Eulyn
authors.initials: E
authors.lastname: Pagaling
authors.affiliation: The Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem Rehovot, Israel.
authors.forename: Edouard
authors.initials: E
authors.lastname: Jurkevitch
authors.affiliation: Department of Civil and Environmental Engineering, University of Hawaii at Manoa Hawaii, HI, USA.
authors.forename: Tao
authors.initials: T
authors.lastname: Yan
authors.affiliation: The Institute of Soil, Water and Environmental Sciences, The Volcani Center, Agricultural Research Organization Bet-Dagan, Israel.
authors.forename: Eddie
authors.initials: E
authors.lastname: Cytryn
keywords: antibiotic resistance; beta-lactamases; ceftriaxone; cephalosporins; soil bacteria; undisturbed soils