title: The complete mitogenome of brown trout (Salmo trutta fario) and its phylogeny.
abstract: The complete mitochondrial genome of Salmo trutta fario, commonly known as brown trout, was sequenced using NGS technology. The mitochondrial genome size was determined to be 16 677 bp and composed of 13 protein-coding gene (PCG), 22 tRNAs, 2 rRNA genes, and 1 putative control region. The overall mitogenome composition of S. trutta fario is A: 28.13%, G: 16.44%, C: 29.47%, and T: 25.96% with A + T content of 54.09% and G + C content of 45.91%. The gene arrangement and the order are similar to other vertebrates. The phylogenetic tree constructed using 42 complete mitogenomes of Salmonidae fishes confirmed the position of the present species under the genus Salmo of subfamily Salmoninae. NGS platform was proved to be a rapid and time-saving technology to reveal complete mitogenomes.
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: Prabhati K
authors.initials: PK
authors.lastname: Sahoo
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: Lalit
authors.initials: L
authors.lastname: Singh
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: Lata
authors.initials: L
authors.lastname: Sharma
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: Rohit
authors.initials: R
authors.lastname: Kumar
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: Vijay K
authors.initials: VK
authors.lastname: Singh
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: S
authors.initials: S
authors.lastname: Ali
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: Atul K
authors.initials: AK
authors.lastname: Singh
authors.affiliation: a Molecular Genetics Laboratory , ICAR-Directorate of Coldwater Fisheries Research, Anusandhan Bhawan , Bhimtal , Nainital , Uttarakhand , India.
authors.forename: Ashoktaru
authors.initials: A
authors.lastname: Barat
mesh_terms: D000818:Animals; D001482:Base Composition; D018387:Codon, Initiator; D004272:DNA, Mitochondrial / Q000737:chemistry / Q000302:isolation & purification / Q000378:metabolism; D003576:Electron Transport Complex IV / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D029941:Fish Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D054629:Genome, Mitochondrial; D016366:Open Reading Frames / Q000235:genetics; D010802:Phylogeny; D012335:RNA, Ribosomal / Q000737:chemistry / Q000235:genetics; D012343:RNA, Transfer / Q000737:chemistry / Q000235:genetics; D017422:Sequence Analysis, DNA; D014337:Trout / Q000145:classification / Q000235:genetics*
chemical_list: D018387:Codon, Initiator; D004272:DNA, Mitochondrial; D029941:Fish Proteins; D012335:RNA, Ribosomal; D012343:RNA, Transfer; D003576:Electron Transport Complex IV
keywords: Brown trout; Illumina Miseq; Salmonidae; next-generation sequencing (NGS); phylogeny