title: Aberrant expression of Notch1, HES1, and DTX1 genes in glioblastoma formalin-fixed paraffin-embedded tissues.
abstract: Glioblastoma is the most common malignant brain tumor accounting for more than 54 % of all gliomas. Despite aggressive treatments, median survival remains less than 1 year. This might be due to the unavailability of effective molecular diagnostic markers and targeted therapy. Thus, it is essential to discover molecular mechanisms underlying disease by identifying dysregulated pathways involved in tumorigenesis. Notch signaling is one such pathway which plays an important role in determining cell fates. Since it is found to play a critical role in many cancers, we investigated the role of Notch genes in glioblastoma with an aim to identify biomarkers that can improve diagnosis. Using real-time PCR, we assessed the expression of Notch genes including receptors (Notch1, Notch2, Notch3, and Notch4), ligands (JAG1, JAG2, and DLL3), downstream targets (HES1 and HEY2), regulator Deltex1 (DTX1), inhibitor NUMB along with transcriptional co-activator MAML1, and a component of gamma-secretase complex APH1A in 15 formalin-fixed paraffin-embedded (FFPE) patient samples. Relative quantification was done by the 2(-ΔΔCt) method; the data are presented as fold change in gene expression normalized to an internal control gene and relative to the calibrator. The data revealed aberrant expression of Notch genes in glioblastoma compared to normal brain. More than 85 % of samples showed high Notch1 (P = 0.0397) gene expression and low HES1 (P = 0.011) and DTX1 (P = 0.0001) gene expression. Our results clearly show aberrant expression of Notch genes in glioblastoma which can be used as putative biomarkers together with histopathological observation to improve diagnosis, therapeutic strategies, and patient prognosis.
authors.affiliation: Department of Biotechnology, Dayananda Sagar College of Engineering, Kumaraswamy Layout, Bangalore, 560078, Karnataka, India. nraja7@gmail.com.|Division of Molecular Medicine, St. John's Research Institute, Bangalore, India. nraja7@gmail.com.
authors.forename: Rajeswari
authors.initials: R
authors.lastname: Narayanappa
authors.affiliation: Department of Pathology, St. John's Medical College, Bangalore, India.
authors.forename: Pritilata
authors.initials: P
authors.lastname: Rout
authors.affiliation: Department of Biotechnology, Dayananda Sagar College of Engineering, Kumaraswamy Layout, Bangalore, 560078, Karnataka, India.
authors.forename: Madhuri G S
authors.initials: MG
authors.lastname: Aithal
authors.affiliation: Department of Neurosurgery, St. John's Medical College, Bangalore, India.
authors.forename: Ashis Kumar
authors.initials: AK
authors.lastname: Chand
mesh_terms: D000293:Adolescent; D000328:Adult; D005260:Female; D015870:Gene Expression; D020869:Gene Expression Profiling; D005909:Glioblastoma / Q000235:genetics* / Q000378:metabolism* / Q000473:pathology; D006801:Humans; D007150:Immunohistochemistry; D008297:Male; D008875:Middle Aged; D060888:Real-Time Polymerase Chain Reaction; D051881:Receptor, Notch1 / Q000235:genetics* / Q000378:metabolism; D000072056:Transcription Factor HES-1 / Q000235:genetics* / Q000378:metabolism; D044767:Ubiquitin-Protein Ligases / Q000235:genetics* / Q000378:metabolism; D055815:Young Adult
chemical_list: D051881:Receptor, Notch1; D000072056:Transcription Factor HES-1; C078493:HES1 protein, human; C583410:DTX1 protein, human; D044767:Ubiquitin-Protein Ligases
keywords: Biomarker; Gene expression; Glioblastoma; Notch genes; Real-time PCR