title: A Comparison of Barostats for the Mechanical Characterization of Metal-Organic Frameworks.
abstract: In this paper, three barostat coupling schemes for pressure control, which are commonly used in molecular dynamics simulations, are critically compared to characterize the rigid MOF-5 and flexible MIL-53(Al) metal-organic frameworks. We investigate the performance of the three barostats, the Berendsen, the Martyna-Tuckerman-Tobias-Klein (MTTK), and the Langevin coupling methods, in reproducing the cell parameters and the pressure versus volume behavior in isothermal-isobaric simulations. A thermodynamic integration method is used to construct the free energy profiles as a function of volume at finite temperature. It is observed that the aforementioned static properties are well-reproduced with the three barostats. However, for static properties depending nonlinearly on the pressure, the Berendsen barostat might give deviating results as it suppresses pressure fluctuations more drastically. Finally, dynamic properties, which are directly related to the fluctuations of the cell, such as the time to transition from the large-pore to the closed-pore phase, cannot be well-reproduced by any of the coupling schemes.
authors.affiliation: Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium.
authors.forename: S M J
authors.initials: SM
authors.lastname: Rogge
authors.affiliation: Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium.
authors.forename: L
authors.initials: L
authors.lastname: Vanduyfhuys
authors.affiliation: Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium.
authors.forename: A
authors.initials: A
authors.lastname: Ghysels
authors.affiliation: Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium.
authors.forename: M
authors.initials: M
authors.lastname: Waroquier
authors.affiliation: Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium.
authors.forename: T
authors.initials: T
authors.lastname: Verstraelen
authors.affiliation: Institut Charles Gerhardt Montpellier, Université Montpellier 2 , Place Eugène Bataillon, 34095 Montpellier cedex 05, France.
authors.forename: G
authors.initials: G
authors.lastname: Maurin
authors.affiliation: Center for Molecular Modeling (CMM), Ghent University , Technologiepark 903, 9052 Zwijnaarde, Belgium.
authors.forename: V
authors.initials: V
authors.lastname: Van Speybroeck
mesh_terms: D017607:Aluminum Compounds / Q000737:chemistry; D006838:Hydrocarbons / Q000737:chemistry; D056004:Molecular Dynamics Simulation; D009942:Organometallic Compounds / Q000737:chemistry*; D013816:Thermodynamics
chemical_list: D017607:Aluminum Compounds; D006838:Hydrocarbons; D009942:Organometallic Compounds