title: The Role of Standing Variation in Geographic Convergent Adaptation.
abstract: The extent to which populations experiencing shared selective pressures adapt through a shared genetic response is relevant to many questions in evolutionary biology. In this article, we explore how standing genetic variation contributes to convergent genetic responses in a geographically spread population. Geographically limited dispersal slows the spread of each selected allele, hence allowing other alleles to spread before any one comes to dominate the population. When selectively equivalent alleles meet, their progress is substantially slowed, dividing the species range into a random tessellation, which can be well understood by analogy to a Poisson process model of crystallization. In this framework, we derive the geographic scale over which an allele dominates and the proportion of adaptive alleles that arise from standing variation. Finally, we explore how negative pleiotropic effects of alleles can bias the subset of alleles that contribute to the species' adaptive response. We apply the results to the malaria-resistance glucose-6-phosphate dehydrogenase-deficiency alleles, where the large mutational target size makes it a likely candidate for adaptation from deleterious standing variation. Our results suggest that convergent adaptation may be common. Therefore, caution must be exercised when arguing that strongly geographically restricted alleles are the outcome of local adaptation. We close by discussing the implications of these results for ideas of species coherence and the nature of divergence between species.
authors.affiliation: Computational Biology and Bioinformatics, University of Southern California, Los Angeles, California 90089.
authors.forename: Peter L
authors.initials: PL
authors.lastname: Ralph
authors.forename: Graham
authors.initials: G
authors.lastname: Coop
mesh_terms: D000222:Adaptation, Physiological / Q000235:genetics*; D000483:Alleles; D005075:Biological Evolution; D060467:Disease Resistance; D014644:Genetic Variation; D005954:Glucosephosphate Dehydrogenase / Q000235:genetics; D006801:Humans; D008288:Malaria / Q000201:enzymology / Q000235:genetics; D008957:Models, Genetic; D009154:Mutation; D058974:Phylogeography; D012641:Selection, Genetic
chemical_list: D005954:Glucosephosphate Dehydrogenase