title: INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction.
abstract: INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional links to third-party functional tools that complement user capabilities, CRM analysis and hypothesis construction. Improvements in the core implementation have led to a faster and more efficient tool. In addition, this new release introduces a new interface designed for a more integrative and dynamic user experience.
  
  
  
  http://bioinformatics.ibioba-mpsp-conicet.gov.ar/INSECT2 CONTACT: pyankilevich@ibioba-mpsp-conicet.gov.ar.
authors.affiliation: Facultad De Ciencias Exactas Y Naturales, Universidad De Buenos Aires, Buenos Aires, Argentina and.
authors.forename: R Gonzalo
authors.initials: RG
authors.lastname: Parra
authors.affiliation: Facultad De Ciencias Exactas Y Naturales, Universidad De Buenos Aires, Buenos Aires, Argentina and.
authors.forename: Cristian O
authors.initials: CO
authors.lastname: Rohr
authors.affiliation: Instituto De Investigacion En Biomedicina De Buenos Aires (IBioBA), CONICET, Partner Institute of the Max Planck Society, Godoy Cruz 2390, Buenos Aires C1425FQA, Argentina.
authors.forename: Daniel
authors.initials: D
authors.lastname: Koile
authors.affiliation: Instituto De Investigacion En Biomedicina De Buenos Aires (IBioBA), CONICET, Partner Institute of the Max Planck Society, Godoy Cruz 2390, Buenos Aires C1425FQA, Argentina.
authors.forename: Carolina
authors.initials: C
authors.lastname: Perez-Castro
authors.affiliation: Instituto De Investigacion En Biomedicina De Buenos Aires (IBioBA), CONICET, Partner Institute of the Max Planck Society, Godoy Cruz 2390, Buenos Aires C1425FQA, Argentina.
authors.forename: Patricio
authors.initials: P
authors.lastname: Yankilevich
mesh_terms: D000465:Algorithms; D001665:Binding Sites; D003198:Computer Simulation; D016678:Genome; D020407:Internet; D050436:Regulatory Elements, Transcriptional; D014157:Transcription Factors
chemical_list: D014157:Transcription Factors