title: Comparative genomic analysis of eutherian tumor necrosis factor ligand genes.
abstract: The present analysis made attempts to resolve discrepancies in descriptions of eutherian tumor necrosis factor ligand genes implicated in cell signalling pathways, as well as in major physiological and pathological processes. Among 455 potential coding sequences, the eutherian comparative genomic analysis protocol annotated 211 complete coding sequences using public genomic sequence assemblies. The most comprehensive third party data gene data set first described 8 superclusters of eutherian tumor necrosis factor ligand genes, including 18 major gene clusters. The integrated gene annotations, phylogenetic analysis, and protein molecular evolution analysis proposed new classification and nomenclature of eutherian tumor necrosis factor ligand genes, as new framework of future experiments.
authors.affiliation: Laboratory of Genomics, Centre of Animal Reproduction, 55 Heinzel St., Zagreb, Croatia. Marko.Premzl@alumni.anu.edu.au.
authors.forename: Marko
authors.identifier: http://orcid.org/0000-0002-3362-689X
authors.initials: M
authors.lastname: Premzl
mesh_terms: D000818:Animals; D019295:Computational Biology; D019143:Evolution, Molecular; D023281:Genomics / Q000379:methods; D008024:Ligands; D008322:Mammals / Q000145:classification / Q000235:genetics*; D058977:Molecular Sequence Annotation; D005810:Multigene Family; D010802:Phylogeny; D048069:Tumor Necrosis Factors / Q000737:chemistry / Q000235:genetics*
chemical_list: D008024:Ligands; D048069:Tumor Necrosis Factors
keywords: Comparative genomic analysis; Gene annotations; Molecular evolution; Phylogenetic analysis