title: Evaluation of Two PCR Tests for Coxiella burnetii Detection in Dairy Cattle Farms Using Latent Class Analysis.
abstract: Different tests performed on bulk tank milk samples (BTM) are available to determine the C. burnetii status of herds. However, these tests, which are based on the detection of either antibodies directed against C. burnetii (ELISA) or bacterial DNA (PCR), have limitations. A currently disease-free herd infected in the past may continue to test positive with ELISA due to the persistence of antibodies in animals that were infected and that subsequently cleared the infection. Infectious herds can also be misclassified using PCR because of the absence of bacteria in the BTM when the test is performed. Recently, PCR has been used for bacterial DNA detection in the farm environment, which constitutes the main reservoir of C. burnetii. The objectives of this study were to assess and compare the sensitivities and specificities of one commonly used PCR test in BTM (PCR BTM) and of a PCR applied to environmental samples (PCR DUST) in dairy cattle farms. BTM and dust samples were collected (using environmental swabs) in 95 herds. The evaluation of the performance of the 2 tests was conducted using latent class models accounting for within herd disease dynamics. Parameter estimation was carried out using MCMC, within a Bayesian framework. Two types of priors were used for the specificity of PCR DUST. A model with a uniform prior on 0-1 fitted the data better than a model with a uniform prior on 0.95-1. With the best model PCR DUST had a lower sensitivity than PCR BTM (0.75 versus 0.83) and a specificity of 0.72. The moderately low value for the specificity of PCR DUST suggests that the presence of bacteria on farm is not always associated with persistent infections and shedding of bacteria in milk.
authors.affiliation: INRA, UMR1300 Biology, Epidemiology and Risk Analysis in animal health, CS 40706, F-44307, Nantes, France.|LUNAM Université, Oniris, UMR BioEpAR, CS 40706, F-44307, Nantes, France.
authors.forename: Simon
authors.initials: S
authors.lastname: Nusinovici
authors.affiliation: INRA, UMR1300 Biology, Epidemiology and Risk Analysis in animal health, CS 40706, F-44307, Nantes, France.|LUNAM Université, Oniris, UMR BioEpAR, CS 40706, F-44307, Nantes, France.
authors.forename: Aurélien
authors.initials: A
authors.lastname: Madouasse
authors.affiliation: INRA, UMR1300 Biology, Epidemiology and Risk Analysis in animal health, CS 40706, F-44307, Nantes, France.|LUNAM Université, Oniris, UMR BioEpAR, CS 40706, F-44307, Nantes, France.
authors.forename: Thierry
authors.initials: T
authors.lastname: Hoch
authors.affiliation: INRA, UMR1300 Biology, Epidemiology and Risk Analysis in animal health, CS 40706, F-44307, Nantes, France.|LUNAM Université, Oniris, UMR BioEpAR, CS 40706, F-44307, Nantes, France.
authors.forename: Raphaël
authors.initials: R
authors.lastname: Guatteo
authors.affiliation: INRA, UMR1300 Biology, Epidemiology and Risk Analysis in animal health, CS 40706, F-44307, Nantes, France.|LUNAM Université, Oniris, UMR BioEpAR, CS 40706, F-44307, Nantes, France.
authors.forename: François
authors.initials: F
authors.lastname: Beaudeau
mesh_terms: D000465:Algorithms; D000818:Animals; D002417:Cattle; D002418:Cattle Diseases / Q000175:diagnosis* / Q000382:microbiology*; D016997:Coxiella burnetii / Q000235:genetics*; D015233:Models, Statistical; D016133:Polymerase Chain Reaction / Q000379:methods / Q000592:standards; D011778:Q Fever / Q000662:veterinary*; D012680:Sensitivity and Specificity