title: Stochastic model of homogeneous coding and latent periodicity in DNA sequences.
abstract: The concept of latent triplet periodicity in coding DNA sequences which has been earlier extensively discussed is confirmed in the result of analysis of a number of eukaryotic genomes, where latent periodicity of a new type, called profile periodicity, is recognized in the CDSs. Original model of Stochastic Homogeneous Organization of Coding (SHOC-model) in textual string is proposed. This model explains the existence of latent profile periodicity and regularity in DNA sequences.
authors.affiliation: Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Institutskaya st., 4, 142290 Pushchino, Russia. Electronic address: chaley@phystech.edu.
authors.forename: Maria
authors.initials: M
authors.lastname: Chaley
authors.affiliation: Department of Computational Mathematics and Mathematical Physics, Moscow State Technical University n.a. N.E. Bauman, the 2nd Baumanskaya st., 5, 105005 Moscow, Russia. Electronic address: vkutyrkin@yandex.ru.
authors.forename: Vladimir
authors.initials: V
authors.lastname: Kutyrkin
mesh_terms: D000818:Animals; D001483:Base Sequence; D003062:Codon / Q000235:genetics*; D004247:DNA / Q000235:genetics*; D016678:Genome / Q000235:genetics; D006801:Humans; D008957:Models, Genetic; D016366:Open Reading Frames / Q000235:genetics; D013269:Stochastic Processes; D020080:Tandem Repeat Sequences / Q000235:genetics*
chemical_list: D003062:Codon; D004247:DNA
keywords: CDS; Latent periodicity; Model of profile periodicity; Spectral-statistical approach; Structural-stochastic coding