title: Examination of the Abscission-Associated Transcriptomes for Soybean, Tomato, and Arabidopsis Highlights the Conserved Biosynthesis of an Extensible Extracellular Matrix and Boundary Layer.
abstract: Abscission zone (AZ) development and the progression of abscission (detachment of plant organs) have been roughly separated into four stages: first, AZ differentiation; second, competence to respond to abscission signals; third, activation of abscission; and fourth, formation of a protective layer and post-abscission trans-differentiation. Stage three, activation of abscission, is when changes in the cell wall and extracellular matrix occur to support successful organ separation. Most abscission research has focused on gene expression for enzymes that disassemble the cell wall within the AZ and changes in phytohormones and other signaling events that regulate their expression. Here, transcriptome data for soybean, tomato and Arabidopsis were examined and compared with a focus not only on genes associated with disassembly of the cell wall but also on gene expression linked to the biosynthesis of a new extracellular matrix. AZ-specific up-regulation of genes associated with cell wall disassembly including cellulases (beta-1,4-endoglucanases, CELs), polygalacturonases (PGs), and expansins (EXPs) were much as expected; however, curiously, changes in expression of xyloglucan endotransglucosylase/hydrolases (XTHs) were not AZ-specific in soybean. Unexpectedly, we identified an early increase in the expression of genes underlying the synthesis of a waxy-like cuticle. Based on the expression data, we propose that the early up-regulation of an abundance of small pathogenesis-related (PR) genes is more closely linked to structural changes in the extracellular matrix of separating cells than an enzymatic role in pathogen resistance. Furthermore, these observations led us to propose that, in addition to cell wall loosening enzymes, abscission requires (or is enhanced by) biosynthesis and secretion of small proteins (15-25 kDa) and waxes that form an extensible extracellular matrix and boundary layer on the surface of separating cells. The synthesis of the boundary layer precedes what is typically associated with the post-abscission synthesis of a protective scar over the fracture plane. This modification in the abscission model is discussed in regard to how it influences our interpretation of the role of multiple abscission signals.
authors.affiliation: Soybean Genomics and Improvement Lab, Agricultural Research Service, United States Department of Agriculture Beltsville, MD, USA.
authors.forename: Joonyup
authors.initials: J
authors.lastname: Kim
authors.affiliation: Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center Bet-Dagan, Israel ; The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem Rehovot, Israel.
authors.forename: Srivignesh
authors.initials: S
authors.lastname: Sundaresan
authors.affiliation: Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center Bet-Dagan, Israel.
authors.forename: Sonia
authors.initials: S
authors.lastname: Philosoph-Hadas
authors.affiliation: Soybean Genomics and Improvement Lab, Agricultural Research Service, United States Department of Agriculture Beltsville, MD, USA.
authors.forename: Ronghui
authors.initials: R
authors.lastname: Yang
authors.affiliation: Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center Bet-Dagan, Israel.
authors.forename: Shimon
authors.initials: S
authors.lastname: Meir
authors.affiliation: Soybean Genomics and Improvement Lab, Agricultural Research Service, United States Department of Agriculture Beltsville, MD, USA.
authors.forename: Mark L
authors.initials: ML
authors.lastname: Tucker
keywords: Arabidopsis; IDA; abscission; cuticle biosynthesis; ethylene; soybean; tomato; transcriptome