title: The mitogenome of Hydropsyche pellucidula (Hydropsychidae): first gene arrangement in the insect order Trichoptera.
abstract: We describe the mitochondrial genome of Hydropsyche pellucidula Curtis 1834, which is first described for the suborder Annulipalpia and the first in the order Trichoptera to show a non-canonical gene order. The mitogenome was obtained by de novo assembly of shotgun sequenced total genomic DNA using Illumina Miseq technology, which produced an average coverage of 115× and a minimum coverage of 48×. The mitochondrial genome includes 13 protein-coding genes, 2 rRNAs and 22 tRNAs. The genome is characterized by a rearrangement in the relative position of protein-coding and ribosomal genes. This mitogenome sequence will be useful for studying the family Hydropsychidae, which is commonly used for freshwater pollution biomonitoring.
authors.affiliation: a Department of Life Sciences , Natural History Museum , London , UK.
authors.forename: B
authors.initials: B
authors.lastname: Linard
authors.affiliation: a Department of Life Sciences , Natural History Museum , London , UK.|b Department of Life Sciences , Imperial College London , Silwood Park Campus , Ascot , UK.
authors.forename: P
authors.initials: P
authors.lastname: Arribas
authors.affiliation: a Department of Life Sciences , Natural History Museum , London , UK.|b Department of Life Sciences , Imperial College London , Silwood Park Campus , Ascot , UK.
authors.forename: C
authors.initials: C
authors.lastname: Andújar
authors.affiliation: a Department of Life Sciences , Natural History Museum , London , UK.|c Department of Genetics , Evolution and Environment, University College London , London , UK.
authors.forename: A
authors.initials: A
authors.lastname: Crampton-Platt
authors.affiliation: a Department of Life Sciences , Natural History Museum , London , UK.|b Department of Life Sciences , Imperial College London , Silwood Park Campus , Ascot , UK.
authors.forename: A P
authors.initials: AP
authors.lastname: Vogler
mesh_terms: D000818:Animals; D001483:Base Sequence; D004272:DNA, Mitochondrial; D023061:Gene Order; D050259:Genes, Mitochondrial; D049750:Genome, Insect; D054629:Genome, Mitochondrial; D023281:Genomics; D059014:High-Throughput Nucleotide Sequencing; D000074748:Holometabola / Q000235:genetics*; D010802:Phylogeny; D017422:Sequence Analysis, DNA
chemical_list: D004272:DNA, Mitochondrial
keywords: Biomonitoring; Hydropsychoidae; Mitochondrial rearrangement; mitochondrial metagenomics