title: Design of Compact Biomimetic Cellulose Binding Peptides as Carriers for Cellulose Catalytic Degradation.
abstract: The conversion of biomass into biofuels can reduce the strategic vulnerability of petroleum-based systems and at the same time have a positive effect on global climate issues. Lignocellulose is the cheapest and most abundant source of biomass and consequently has been widely considered as a source for liquid fuel. However, despite ongoing efforts, cellulosic biofuels are still far from commercial realization, one of the major bottlenecks being the hydrolysis of cellulose into simpler sugars. Inspired by the structural and functional modularity of cellulases used by many organisms for the breakdown of cellulose, we propose to mimic the cellulose binding domain (CBD) and the catalytic domain of these proteins by small molecular entities. Multiple copies of these mimics could subsequently be tethered together to enhance hydrolytic activity. In this work, we take the first step toward achieving this goal by applying computational approaches to the design of efficient, cost-effective mimetics of the CBD. The design is based on low molecular weight peptides that are amenable to large-scale production. We provide an optimized design of four short (i.e., ∼18 residues) peptide mimetics based on the three-dimensional structure of a known CBD and demonstrate that some of these peptides bind cellulose as well as or better than the full CBD. The structures of these peptides were studied by circular dichroism and their interactions with cellulose by solid phase NMR. Finally, we present a computational strategy for predicting CBD/peptide-cellulose binding free energies and demonstrate its ability to provide values in good agreement with experimental data. Using this computational model, we have also studied the dissociation pathway of the CBDs/peptides from the surface of cellulose.
authors.affiliation: Department of Chemistry, Bar Ilan University , Ramat Gan 5290002, Israel.
authors.forename: Netaly
authors.initials: N
authors.lastname: Khazanov
authors.affiliation: Department of Chemistry, Bar Ilan University , Ramat Gan 5290002, Israel.
authors.forename: Taly
authors.initials: T
authors.lastname: Iline-Vul
authors.affiliation: Department of Chemistry, Bar Ilan University , Ramat Gan 5290002, Israel.
authors.forename: Efrat
authors.initials: E
authors.lastname: Noy
authors.affiliation: Department of Chemistry, Bar Ilan University , Ramat Gan 5290002, Israel.
authors.forename: Gil
authors.initials: G
authors.lastname: Goobes
authors.affiliation: Department of Chemistry, Bar Ilan University , Ramat Gan 5290002, Israel.
authors.forename: Hanoch
authors.initials: H
authors.lastname: Senderowitz
mesh_terms: D000595:Amino Acid Sequence; D032701:Biomimetics; D066241:Carbon-13 Magnetic Resonance Spectroscopy; D002384:Catalysis; D002482:Cellulose / Q000378:metabolism*; D002942:Circular Dichroism; D006868:Hydrolysis; D056004:Molecular Dynamics Simulation; D008969:Molecular Sequence Data; D008970:Molecular Weight; D010455:Peptides / Q000737:chemistry / Q000378:metabolism*
chemical_list: D010455:Peptides; D002482:Cellulose