title: Microarray analysis of potential genes in the pathogenesis of recurrent oral ulcer.
abstract: Recurrent oral ulcer seriously threatens patients' daily life and health. This study investigated potential genes and pathways that participate in the pathogenesis of recurrent oral ulcer by high throughput bioinformatic analysis. RT-PCR and Western blot were applied to further verify screened interleukins effect. Recurrent oral ulcer related genes were collected from websites and papers, and further found out from Human Genome 280 6.0 microarray data. Each pathway of recurrent oral ulcer related genes were got through chip hybridization. RT-PCR was applied to test four recurrent oral ulcer related genes to verify the microarray data. Data transformation, scatter plot, clustering analysis, and expression pattern analysis were used to analyze recurrent oral ulcer related gene expression changes. Recurrent oral ulcer gene microarray was successfully established. Microarray showed that 551 genes involved in recurrent oral ulcer activity and 196 genes were recurrent oral ulcer related genes. Of them, 76 genes up-regulated, 62 genes down-regulated, and 58 genes up-/down-regulated. Total expression level up-regulated 752 times (60%) and down-regulated 485 times (40%). IL-2 plays an important role in the occurrence, development and recurrence of recurrent oral ulcer on the mRNA and protein levels. Gene microarray can be used to analyze potential genes and pathways in recurrent oral ulcer. IL-2 may be involved in the pathogenesis of recurrent oral ulcer.
authors.affiliation: Department of Orthodontics, The Second Affiliated Hospital of Harbin Medical University Harbin 150086, Heilongjiang, China.
authors.forename: Jingying
authors.initials: J
authors.lastname: Han
authors.affiliation: Department of Orthodontics, The Second Affiliated Hospital of Harbin Medical University Harbin 150086, Heilongjiang, China.
authors.forename: Zhiwei
authors.initials: Z
authors.lastname: He
authors.affiliation: Department of Orthodontics, The Second Affiliated Hospital of Harbin Medical University Harbin 150086, Heilongjiang, China.
authors.forename: Kun
authors.initials: K
authors.lastname: Li
authors.affiliation: Department of Orthodontics, The Second Affiliated Hospital of Harbin Medical University Harbin 150086, Heilongjiang, China.
authors.forename: Lu
authors.initials: L
authors.lastname: Hou
mesh_terms: D015153:Blotting, Western; D016000:Cluster Analysis; D020869:Gene Expression Profiling; D006801:Humans; D007376:Interleukin-2 / Q000235:genetics*; D020411:Oligonucleotide Array Sequence Analysis; D019226:Oral Ulcer / Q000235:genetics* / Q000473:pathology*; D012008:Recurrence; D020133:Reverse Transcriptase Polymerase Chain Reaction; D059467:Transcriptome
chemical_list: C508594:IL2 protein, human; D007376:Interleukin-2
keywords: Recurrent oral ulcer; gene; gene expression analysis; gene microarray; interleukin; pathway