title: Modeling the LPS-induced effects on transcription factor activation and gene expression in murine macrophages.
abstract: Macrophages within the liver are of particular importance for a functional defense against bacterial infection. They exhibit a complex response to lipopolysaccharide and secrete a variety of pro-inflammatory cytokines and chemokines that both coordinate the immune response and regulate activity of the macrophages, themselves. In this context, the dynamic of pathway activation and gene expression is important for a better understanding of the role of activated macrophages in healthy and diseased states. Therefore, we present a representative model of LPS-induced macrophage activation that covers the principle regulatory motifs. Based on that, we propose a simplified model with a reduced number of states and parameters that allows estimation of transcription factor activity from gene expression data and can be easily extended to describe the full spectrum of gene regulation in LPS-activated macrophages.
authors.forename: J
authors.initials: J
authors.lastname: Sanwald
authors.forename: U
authors.initials: U
authors.lastname: Albrecht
authors.forename: J
authors.initials: J
authors.lastname: Wagenpfeil
authors.forename: M
authors.initials: M
authors.lastname: Thomas
authors.forename: O
authors.initials: O
authors.lastname: Sawodny
authors.forename: J G
authors.initials: JG
authors.lastname: Bode
authors.forename: R
authors.initials: R
authors.lastname: Feuer
mesh_terms: D000818:Animals; D018925:Chemokines / Q000378:metabolism; D016207:Cytokines / Q000378:metabolism; D005786:Gene Expression Regulation / Q000187:drug effects*; D008070:Lipopolysaccharides / Q000633:toxicity*; D008264:Macrophages / Q000166:cytology / Q000187:drug effects / Q000378:metabolism*; D051379:Mice; D008954:Models, Biological; D016328:NF-kappa B / Q000378:metabolism; D012333:RNA, Messenger / Q000378:metabolism; D014157:Transcription Factors / Q000378:metabolism*
chemical_list: D018925:Chemokines; D016207:Cytokines; D008070:Lipopolysaccharides; D016328:NF-kappa B; D012333:RNA, Messenger; D014157:Transcription Factors