title: Hyperspectral image acquisition and analysis of cultured bacteria for the discrimination of urinary tract infections.
abstract: Because of their widespread diffusion and impact on human health, early identification of pathogens responsible for urinary tract infections (UTI) is one of the main challenges of clinical microbiology. Currently, bacteria culturing on Chromogenic plates is widely adopted for UTI detection for its readily interpretable visual outcomes. However, the search of alternate solutions can be highly attractive, especially in the rapidly developing context of bacteriology laboratory automation and digitization, as long as they can improve cost-effectiveness or allow early discrimination. In this work, we consider and develop hyperspectral image acquisition and analysis solutions to verify the feasibility of a "virtual chromogenic agar" approach, based on the acquisition of spectral signatures from bacterial colonies growing on blood agar plates, and their interpretation by means of machine learning solutions. We implemented and tested two classification approaches (PCA+SVM and RSIMCA) that evidenced good capability to discriminate among five selected UTI bacteria. For its better performance, robustness and attitude to work with an expanding set of pathogens, we conclude that the RSIMCA-based approach is worth to be further investigated in a clinical usage perspective.
authors.forename: Giovanni
authors.initials: G
authors.lastname: Turra
authors.forename: Nicola
authors.initials: N
authors.lastname: Conti
authors.forename: Alberto
authors.initials: A
authors.lastname: Signoroni
mesh_terms: D000362:Agar; D006801:Humans; D014552:Urinary Tract Infections / Q000382:microbiology*
chemical_list: D000362:Agar