title: The complete chloroplast genome sequence of Maddenia hypoleuca koehne (Prunoideae, Rosaceae).
abstract: Maddenia hypoleuca Koehne belonging to family Rosaceae is a native species in China. The complete chloroplast (cp) genome was generated by de novo assembly using low coverage whole genome sequencing data and manual correction. The cp genome was 158 084 bp in length, with GC content of 36.63%. It exhibited a typical quadripartite structure: a pair of large inverted repeat regions (IRs, 26 246 bp each), a large single-copy region (LSC, 86 713 bp), and a small single-copy region (SSC, 18 879 bp). A total of 114 genes were predicted, which included 80 protein-coding genes, 30 tRNA genes, and four rRNA genes. Phylogenetic analysis indicated that M. hypoleuca is most closely related to Prunus padus within the Prunoideae subfamily, which conforms to the traditional classification.
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.
authors.forename: Tao
authors.initials: T
authors.lastname: Chen
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.
authors.forename: Jing
authors.initials: J
authors.lastname: Zhang
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.
authors.forename: Yin
authors.initials: Y
authors.lastname: Liu
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.
authors.forename: Hao
authors.initials: H
authors.lastname: Wang
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.
authors.forename: Juan
authors.initials: J
authors.lastname: Wang
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.
authors.forename: Qing
authors.initials: Q
authors.lastname: Chen
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.
authors.forename: Hao-Ru
authors.initials: HR
authors.lastname: Tang
authors.affiliation: a College of Horticulture, Sichuan Agricultural University , Chengdu , China and.|b Institute of Pomology and Olericulture, Sichuan Agricultural University , Chengdu , China.
authors.forename: Xiao-Rong
authors.initials: XR
authors.lastname: Wang
mesh_terms: D001482:Base Composition; D002736:Chloroplasts / Q000235:genetics*; D018742:DNA, Chloroplast / Q000737:chemistry / Q000302:isolation & purification / Q000378:metabolism; D054628:Genome, Chloroplast; D018895:Microsatellite Repeats / Q000235:genetics; D010802:Phylogeny; D010940:Plant Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D012335:RNA, Ribosomal / Q000737:chemistry / Q000235:genetics; D012343:RNA, Transfer / Q000737:chemistry / Q000235:genetics; D027824:Rosaceae / Q000145:classification / Q000235:genetics*; D017422:Sequence Analysis, DNA
chemical_list: D018742:DNA, Chloroplast; D010940:Plant Proteins; D012335:RNA, Ribosomal; D012343:RNA, Transfer
keywords: Chloroplast genome; Illumina sequencing; Maddenia hypoleuca; phylogenetic analysis