title: Complete mitochondrial genome sequence of Indian medium carp, Labeo gonius (Hamilton, 1822) and its comparison with other related carp species.
abstract: In the present study, the complete mitochondrial genome sequence of Labeo gonius is reported using PGM sequencer (Ion Torrent). The complete mitogenome of L. gonius is obtained by the de novo sequences assembly of genomic reads using the Torrent Mapping Alignment Program (TMAP) which is 16 614 bp in length. The mitogenome of L. gonius comprised of 13 protein-coding genes, 22 tRNAs, 2 rRNA genes, and D-loop as control region along with gene order and organization, being similar to most of other fish mitogenomes of NCBI databases. The mitogenome in the present study has 99% similarity to the complete mitogenome sequence of Labeo fimbriatus, as reported earlier. The phylogenetic analysis of Cypriniformes depicted that their mitogenomes are closely related to each other. The complete mitogenome sequence of L. gonius would be helpful in understanding the population genetics, phylogenetics, and evolution of Indian Carps.
authors.affiliation: a Fish Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute , Barrackpore , West Bengal , Kolkata , India , and.
authors.forename: Bijay Kumar
authors.initials: BK
authors.lastname: Behera
authors.affiliation: a Fish Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute , Barrackpore , West Bengal , Kolkata , India , and.
authors.forename: Kavita
authors.initials: K
authors.lastname: Kumari
authors.affiliation: a Fish Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute , Barrackpore , West Bengal , Kolkata , India , and.
authors.forename: Vishwamitra Singh
authors.initials: VS
authors.lastname: Baisvar
authors.affiliation: a Fish Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute , Barrackpore , West Bengal , Kolkata , India , and.
authors.forename: Ajaya Kumar
authors.initials: AK
authors.lastname: Rout
authors.affiliation: a Fish Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute , Barrackpore , West Bengal , Kolkata , India , and.
authors.forename: Sudip
authors.initials: S
authors.lastname: Pakrashi
authors.affiliation: a Fish Biotechnology Laboratory, ICAR-Central Inland Fisheries Research Institute , Barrackpore , West Bengal , Kolkata , India , and.
authors.forename: Prasenjet
authors.initials: P
authors.lastname: Paria
authors.affiliation: b ICAR-National Bureau of Fish Genetics Resources , Lucknow , Uttar Pradesh , India.
authors.forename: J K
authors.initials: JK
authors.lastname: Jena
mesh_terms: D000818:Animals; D001482:Base Composition; D002347:Carps / Q000145:classification / Q000235:genetics*; D018387:Codon, Initiator; D018388:Codon, Terminator; D004272:DNA, Mitochondrial / Q000737:chemistry / Q000302:isolation & purification / Q000378:metabolism; D029941:Fish Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D054629:Genome, Mitochondrial; D016366:Open Reading Frames / Q000235:genetics; D010802:Phylogeny; D012335:RNA, Ribosomal / Q000737:chemistry / Q000235:genetics; D012343:RNA, Transfer / Q000737:chemistry / Q000235:genetics; D017422:Sequence Analysis, DNA
chemical_list: D018387:Codon, Initiator; D018388:Codon, Terminator; D004272:DNA, Mitochondrial; D029941:Fish Proteins; D012335:RNA, Ribosomal; D012343:RNA, Transfer
keywords: Cyprinidae; Labeo gonius; mitogenome; next-generation sequencing