title: Tracking single-cells in overcrowded bacterial colonies.
abstract: Cell tracking enables data extraction from timelapse "cell movies" and promotes modeling biological processes at the single-cell level. We introduce a new fully automated computational strategy to track accurately cells across frames in time-lapse movies. Our method is based on a dynamic neighborhoods formation and matching approach, inspired by motion estimation algorithms for video compression. Moreover, it exploits "divide and conquer" opportunities to solve effectively the challenging cells tracking problem in overcrowded bacterial colonies. Using cell movies generated by different labs we demonstrate that the accuracy of the proposed method remains very high (exceeds 97%) even when analyzing large overcrowded microbial colonies.
authors.forename: Athanasios D
authors.initials: AD
authors.lastname: Balomenos
authors.forename: Panagiotis
authors.initials: P
authors.lastname: Tsakanikas
authors.forename: Elias S
authors.initials: ES
authors.lastname: Manolakos
mesh_terms: D000465:Algorithms; D001331:Automation; D001419:Bacteria / Q000166:cytology*; D018407:Bacterial Physiological Phenomena; D058948:Cell Tracking / Q000379:methods*; D044962:Data Compression; D015233:Models, Statistical; D009068:Movement; D012044:Regression Analysis; D014741:Video Recording