title: Characterizing root-associated fungal communities and soils of Douglas-fir (Pseudotsuga menziesii) stands that naturally produce Oregon white truffles (Tuber oregonense and Tuber gibbosum).
abstract: Many truffle species in the genus Tuber are endemic to North America. Some of these have commercial value such as Tuber oregonense and Tuber gibbosum, commonly known as Oregon white truffles. Most of what is known about the ecology of these truffles comes from observational data. These truffle species form ectomycorrhizas with Douglas-fir (Pseudotsuga menziesii) and sometimes fruit abundantly in early successional forest regrowth. The goal of this study was to characterize fungal communities and soils associated with truffle-producing Douglas-fir sites. We extracted DNA from roots of five trees at four different truffle-producing Douglas-fir sites (n = 20). We amplified the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA (nrDNA) and sequenced amplicons with 454 pyrosequencing. After quality filtering, we assembled 15,713 sequences into 150 fungal operational taxonomic units (OTUs). Pezizomycetes (Tuber and Pyronemataceae) were the most abundant taxa detected followed by Helotiales. Agaricomycetes represented most by Thelephoraceae, Russulaceae, and Inocybaceae were also abundant. A total of five Tuber species were detected. T. oregonense was the most abundant OTU, followed by T. gibbosum and Wilcoxina mikolae. Fungal root endophytes were also detected and well represented by Chalara and Phialocephala spp. Fungal community structure and soil chemistry differed between sites. This study represents the first characterization of the fungal communities in Douglas-fir stands producing Oregon white truffles. We found that Tuber species can be dominant ectomycorrhizal symbionts of Douglas-fir. Truffle fungi are also important in forest health, food webs, and as a non-timber forest resource that can contribute to rural economies.
authors.affiliation: Michigan State University, East Lansing, MI, 48824, USA.
authors.forename: Gian Maria Niccolò
authors.initials: GM
authors.lastname: Benucci
authors.affiliation: New World Truffieres, Incorporation, Eugene, OR, 97405, USA.
authors.forename: Charles
authors.initials: C
authors.lastname: Lefevre
authors.affiliation: Michigan State University, East Lansing, MI, 48824, USA. bonito@msu.edu.
authors.forename: Gregory
authors.initials: G
authors.lastname: Bonito
mesh_terms: D001203:Ascomycota / Q000145:classification / Q000235:genetics / Q000502:physiology*; D004271:DNA, Fungal / Q000235:genetics; D021903:DNA, Ribosomal Spacer / Q000235:genetics; D014644:Genetic Variation; D018517:Plant Roots / Q000382:microbiology*; D028224:Pseudotsuga / Q000382:microbiology*; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D004271:DNA, Fungal; D021903:DNA, Ribosomal Spacer; D012987:Soil
keywords: 454 pyrosequencing; Douglas-fir; ITS; Rhizosphere fungal community; Root endophytes; Tuber spp.