title: Exploring the binding mechanism of 5-hydroxy-3',4',7-trimethoxyflavone with bovine serum albumin: Spectroscopic and computational approach.
abstract: The current study was carried out to investigate the binding mechanism of a potential flavonoid compound 5-hydroxy-3',4',7-trimethoxyflavone (HTMF) with bovine serum albumin (BSA) using ultraviolet-visible, fluorescence, circular dichroism (CD) spectral measurements along with molecular docking and molecular dynamics (MD) simulation. It was confirmed from fluorescence spectra that the intrinsic fluorescence of BSA was robustly quenched by HTMF through a static quenching mechanism. The number of binding sites (n) for HTMF binding on BSA was found to be about one. The thermodynamic parameters estimated from the van't Hoff plot specified that hydrophobic force was the predominant force in the HTMF-BSA complex and there also exist hydrogen bonds and electrostatic interactions. The effect of HTMF on the BSA conformation examined using CD studies revealed that there is a decrease in the helical content of BSA upon HTMF interaction. The results of molecular docking study shed light on the binding mode which exposed that HTMF bind within the hydrophobic pocket of the subdomain IIIA of BSA. The stability of HTMF-BSA complex with respect to free protein was analyzed from the molecular dynamic studies. The electronic structure analysis of HTMF was achieved by using density functional theory (DFT) calculations at B3LYP/6-31G** level to support its antioxidant role. The results of computational analysis are in good consistence with the experimental data and the present findings suggested that HTMF exhibits a good binding propensity to BSA protein which will be helpful for the drug design.
authors.affiliation: Department of Bioinformatics, Alagappa University, Karaikudi 630 004, India.
authors.forename: A
authors.initials: A
authors.lastname: Sudha
authors.affiliation: Department of Bioinformatics, Alagappa University, Karaikudi 630 004, India; Department of Animal Health and Management, Alagappa University, Karaikudi 630 004, India. Electronic address: sri.bioinformatics@gmail.com.
authors.forename: P
authors.initials: P
authors.lastname: Srinivasan
authors.affiliation: Department of Industrial Chemistry, Alagappa University, Karaikudi 630 003, India.
authors.forename: V
authors.initials: V
authors.lastname: Thamilarasan
authors.affiliation: Department of Chemistry, Directorate of Distance Education, Alagappa University, Karaikudi 630 004, India.
authors.forename: N
authors.initials: N
authors.lastname: Sengottuvelan
mesh_terms: D000818:Animals; D000975:Antioxidants / Q000737:chemistry / Q000378:metabolism*; D001665:Binding Sites; D002417:Cattle; D002942:Circular Dichroism; D047309:Flavones / Q000737:chemistry / Q000378:metabolism*; D057927:Hydrophobic and Hydrophilic Interactions; D062105:Molecular Docking Simulation; D011485:Protein Binding; D012710:Serum Albumin, Bovine / Q000737:chemistry / Q000378:metabolism*; D013050:Spectrometry, Fluorescence; D013056:Spectrophotometry, Ultraviolet; D013816:Thermodynamics
chemical_list: C524117:3',4',7-trimethoxyflavone; D000975:Antioxidants; D047309:Flavones; D012710:Serum Albumin, Bovine
keywords: 5-Hydroxy-3′,4′,7-trimethoxyflavone; Binding mechanism; Bovine serum albumin; Molecular docking and molecular dynamics