title: Sequential fractionation and isolation of subcellular proteins from tissue or cultured cells.
abstract: Many types of studies require the localization of a protein to, or isolation of enriched protein from a specific cellular compartment. Many protocols in the literature and from commercially available kits claim to yield pure cellular fractions. However, in our hands, the former often do not work effectively and the latter may be prohibitively expensive if a large number of fractionations are required. Furthermore, the largely proprietary composition of reagents in commercial kits means that the user is not able to make adjustments if, for example, a particular component affects the activity of a protein of interest. The method described here allows the isolation of purified proteins from three cellular fractions: the cytosol, membrane-bound organelles, and the nucleus. It uses gentle buffers with increasing detergent strength that sequentially lyse the cell membrane, organelle membranes and finally the nuclear membrane.•Quick, simple to replicate or adjust; this method does not require expensive reagents or use of commercial kits•The protocol can be applied to tissue samples or cultured cells without changing buffer components•Yields purified fractions of cytosolic, membrane bound and nuclear proteins, with the proper distribution of the appropriate subcellular markers: GAPDH, VDAC, SERCA2 and lamin A/C.
authors.affiliation: Department of Pharmacology, Cardiovascular Research Centre, Mazakowski Alberta Heart Institute, University of Alberta, Edmonton, Alberta, Canada.
authors.forename: Sabina
authors.initials: S
authors.lastname: Baghirova
authors.affiliation: Department of Pharmacology, Cardiovascular Research Centre, Mazakowski Alberta Heart Institute, University of Alberta, Edmonton, Alberta, Canada; Department of Pediatrics, Cardiovascular Research Centre, Mazakowski Alberta Heart Institute, University of Alberta, Edmonton, Alberta, Canada.
authors.forename: Bryan G
authors.initials: BG
authors.lastname: Hughes
authors.affiliation: Department of Oncology, University of Alberta, Edmonton, Alberta, Canada.
authors.forename: Michael J
authors.initials: MJ
authors.lastname: Hendzel
authors.affiliation: Department of Pharmacology, Cardiovascular Research Centre, Mazakowski Alberta Heart Institute, University of Alberta, Edmonton, Alberta, Canada; Department of Pediatrics, Cardiovascular Research Centre, Mazakowski Alberta Heart Institute, University of Alberta, Edmonton, Alberta, Canada.
authors.forename: Richard
authors.initials: R
authors.lastname: Schulz
keywords: Cell fractionation; Membrane proteins; Nuclear proteins; Sequential lysis; Subcellular organelles; Tissue fractionation