title: Quantifying diatom silicification with the fluorescent dye, PDMPO.
abstract: Diatoms require silicic acid to construct ornately detailed cell walls called frustules. The growth and geographic distribution of diatoms is often controlled by the availability of silicic acid. Analytical methods exist to assess diatom community biogenic silica (bSiO2) production, but partitioning production among taxa has been largely qualitative. We present a method for the quantitative analysis of taxa-specific silica production through labeling diatoms with the fluorescent dye PDMPO [2-(4-pyridyl)-5-((4-(2-dimethylaminoethylaminocarbamoyl)methoxy)phenyl)oxazole]. To make PDMPO a quantitative tool: diatom frustules were solubilized to assess the total diatom community incorporation by quantitation of PDMPO fluorescence using a fluorometer, and laser confocal microscopy was used to quantify the fluorescence of PDMPO in single diatom cells. We created a fluorescence standard to intercalibrate the raw fluorescence signals of the fluorometer and microscope and to determine the fluorescence per mole of PDMPO. PDMPO incorporation was converted to silica production using diatom bSiO2:PDMPO incorporation ratios which varied systematically with silicic acid concentration. Above 3 μM Si(OH)4, bSiO2:PDMPO was constant and PDMPO incorporation was converted to silica production using a mole ratio of 2,916 as determined from cultures. Below 3 μM, the ratio was a linear function of [Si(OH)4] (bSiO2:PDMPO = 912.6 × [Si(OH)4]), as determined using data from two oceanographic cruises. Field evaluation of the method showed that total community PDMPO incorporation generally agreed to within 30% of radioisotope-determined silica production. This PDMPO method has the potential to be a powerful tool for understanding physiology, silicification and resource competition among diatom taxa.
authors.affiliation: Department of Ecology Evolution and Marine Biology, University of California, Santa Barbara, California 93106, United States of America.
authors.forename: Heather M
authors.initials: HM
authors.lastname: McNair
authors.affiliation: Department of Ecology Evolution and Marine Biology, University of California, Santa Barbara, California 93106, United States of America; Marine Science Institute, University of California, Santa Barbara, California 93106, United States of America.
authors.forename: Mark A
authors.initials: MA
authors.lastname: Brzezinski
authors.affiliation: Marine Science Institute, University of California, Santa Barbara, California 93106, United States of America; Dauphin Island Sea Lab, Dauphin Island, Alabama 36528, United States of America; Department of Marine Sciences, University of South Alabama, Mobile, Alabama 36688, United States of America.
authors.forename: Jeffrey W
authors.initials: JW
authors.lastname: Krause
keywords: PDMPO; diatoms; fluorescence; quantitative analysis; silicification