title: Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data.
abstract: : The program sampletrees is a Markov chain Monte Carlo sampler of gene genealogies conditional on either phased or unphased SNP genotype data. The companion program Rsampletrees is for pre- and post-processing of sampletrees files, including setting up the files for sampletrees and storing and plotting the output of a sampletrees run.
  
  
  
  sampletrees is implemented in C ++. The source code, documentation and test files are available at http://stat.sfu.ca/statgen/research/sampletrees.html The R package Rsampletrees is available on CRAN http://cran.r-project.org/web/packages/Rsampletrees/index.html
  
  
  
  : kburkett@uottawa.ca
  
  
  
  Supplementary data are available at Bioinformatics online.
authors.affiliation: Department of Statistics, Simon Fraser University, Burnaby V5A 1S6, Canada and Department of Mathematics and Statistics, University of Ottawa, Ottawa K1N 6N5, Canada.
authors.forename: Kelly M
authors.initials: KM
authors.lastname: Burkett
authors.affiliation: Department of Statistics, Simon Fraser University, Burnaby V5A 1S6, Canada and.
authors.forename: Brad
authors.initials: B
authors.lastname: McNeney
authors.affiliation: Department of Statistics, Simon Fraser University, Burnaby V5A 1S6, Canada and.
authors.forename: Jinko
authors.initials: J
authors.lastname: Graham
mesh_terms: D005789:Genealogy and Heraldry; D005838:Genotype; D008390:Markov Chains; D011381:Programming Languages; D012984:Software