title: Bayesian estimation of the discrete coefficient of determination.
abstract: The discrete coefficient of determination (CoD) measures the nonlinear interaction between discrete predictor and target variables and has had far-reaching applications in Genomic Signal Processing. Previous work has addressed the inference of the discrete CoD using classical parametric and nonparametric approaches. In this paper, we introduce a Bayesian framework for the inference of the discrete CoD. We derive analytically the optimal minimum mean-square error (MMSE) CoD estimator, as well as a CoD estimator based on the Optimal Bayesian Predictor (OBP). For the latter estimator, exact expressions for its bias, variance, and root-mean-square (RMS) are given. The accuracy of both Bayesian CoD estimators with non-informative and informative priors, under fixed or random parameters, is studied via analytical and numerical approaches. We also demonstrate the application of the proposed Bayesian approach in the inference of gene regulatory networks, using gene-expression data from a previously published study on metastatic melanoma.
authors.affiliation: Emmes Corporation, 401 N. Washington Street, Suite 700, Rockville, 20850 MD USA.
authors.forename: Ting
authors.initials: T
authors.lastname: Chen
authors.affiliation: Department of Electrical and Computer Engineering, Texas A&M University, College Station, 77843 TX, USA.
authors.forename: Ulisses M
authors.initials: UM
authors.lastname: Braga-Neto
keywords: Bayesian inference; Discrete coefficient of determination; Gene regulatory network inference