title: Isolation, characterization, and multiplexing of novel microsatellite markers for the tropical scalloped spiny lobster (Panulirus homarus).
abstract: Of the various spiny lobster species in the tropical and subtropical Indo-West Pacific region, the tropical scalloped spiny lobster (Panulirus homarus) supports one of the most commercially valuable fishery resources in many coastal African and Asian countries. The last decade has witnessed a serious decline in the wild populations of this species. Knowledge of the genetic basis of spiny lobster population structure is a prerequisite to achieve a sustainable fisheries management for this species. Here, we describe 13 novel polymorphic microsatellite markers developed for P. homarus, using a cross-species primer design strategy based on P. ornatus Roche 454 shot-gun generated sequencing. Microsatellite polymorphisms were assessed in 96 unrelated P. homarus individuals of a natural population, with the number of alleles per locus varying from 2 to 14, the observed and expected heterozygosity from 0.00 to 0.78 and from 0.03 to 0.79, respectively, and with only four loci (Pho-G27, Pho-G32, Pho-G36, and Pho-G58) deviating from Hardy- Weinberg equilibrium. Genetic linkage disequilibrium analysis between all pairs of the loci showed significant departure from the null hypothesis between loci Pho-G22 - Pho-G30, and Pho-G30 - Pho-G35. The successful cross amplification of these microsatellites highlights the potential of the developed microsatellites for future population genetic research within the different Panulirus species.
authors.affiliation: Centre of Excellence in Marine Biotechnology, Sultan Qaboos University, Al-Khoud, Sultanate of Oman.
authors.forename: M
authors.initials: M
authors.lastname: Delghandi
authors.affiliation: Centre of Excellence in Marine Biotechnology, Sultan Qaboos University, Al-Khoud, Sultanate of Oman.
authors.forename: S
authors.initials: S
authors.lastname: Goddard
authors.affiliation: Centre for Sustainable Tropical Fisheries and Aquaculture and College of Marine and Environmental Science, James Cook University, Townsville, Australia.
authors.forename: D R
authors.initials: DR
authors.lastname: Jerry
authors.affiliation: Centre for Sustainable Tropical Fisheries and Aquaculture and College of Marine and Environmental Science, James Cook University, Townsville, Australia.
authors.forename: H T
authors.initials: HT
authors.lastname: Dao
authors.affiliation: Centre of Excellence in Marine Biotechnology, Sultan Qaboos University, Al-Khoud, Sultanate of Oman.
authors.forename: H
authors.initials: H
authors.lastname: Afzal
authors.affiliation: Ministry of Agriculture and Fisheries Wealth, Muscat, Sultanate of Oman.
authors.forename: S S
authors.initials: SS
authors.lastname: Al-Jardani
mesh_terms: D000818:Animals; D056426:Genetic Loci; D059014:High-Throughput Nucleotide Sequencing; D018895:Microsatellite Repeats; D033521:Palinuridae / Q000235:genetics*; D011110:Polymorphism, Genetic; D017422:Sequence Analysis, DNA