title: Molecular Modeling of the Structural and Dynamical Changes in Calcium Channel TRPV5 Induced by the African-Specific A563T Variation.
abstract: Transient receptor potential cation channels, vanilloid subfamily, member 5 (TRPV5) plays a key role in active Ca(2+) reabsorption in the kidney. Variations in TRPV5 occur at high frequency in African populations and may contribute to their higher efficiency of Ca(2+) reabsorption. One of the African specific variations, A563T, exhibits increased Ca(2+) transport ability. However, it is unclear how this variation influences the channel pore. On the basis of the structure of TRPV1, a TRPV5 model was generated to simulate the structural and dynamical changes induced by the A563T variation. On the basis of this model, amino acid residue 563 interacts with V540, which is one residue away from the key residue, D542, involved in Ca(2+) selectivity and Mg(2+) blockade. The A563T variation increases secondary structure stability and reduces dynamical motion of D542. In addition, the A563T variation alters the electrostatic potential of the outer surface of the pore. Differences in contact between selective filter residues and residue 563 and in electrostatic potential between the two TRPV5 variants were also observed in another model derived from an alternative alignment in the selective filters between TRPV5 and TRPV1. These findings indicate that the A563T variation induces structural, dynamical, and electrostatic changes in the TRPV5 pore, providing structural insight into the functional alterations associated with the A563T variation.
authors.affiliation: Division of Nephrology, Department of Medicine, Nephrology Research and Training Center and ‡Department of Urology, University of Alabama at Birmingham , Birmingham, Alabama 35294, United States.
authors.forename: Lingyun
authors.initials: L
authors.lastname: Wang
authors.affiliation: Division of Nephrology, Department of Medicine, Nephrology Research and Training Center and ‡Department of Urology, University of Alabama at Birmingham , Birmingham, Alabama 35294, United States.
authors.forename: Ross P
authors.initials: RP
authors.lastname: Holmes
authors.affiliation: Division of Nephrology, Department of Medicine, Nephrology Research and Training Center and ‡Department of Urology, University of Alabama at Birmingham , Birmingham, Alabama 35294, United States.
authors.forename: Ji-Bin
authors.initials: JB
authors.lastname: Peng
mesh_terms: D000818:Animals; D044383:Black People / Q000235:genetics; D002118:Calcium / Q000378:metabolism; D006801:Humans; D056004:Molecular Dynamics Simulation; D017354:Point Mutation; D011487:Protein Conformation; D051381:Rats; D055672:Static Electricity; D050916:TRPV Cation Channels / Q000737:chemistry* / Q000235:genetics* / Q000378:metabolism
chemical_list: D050916:TRPV Cation Channels; C492239:TRPV5 protein, human; D002118:Calcium
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