title: 'Candidatus Phytoplasma cirsii', a novel taxon from creeping thistle [Cirsium arvense (L.) Scop].
abstract: Creeping thistle [Cirsium arvense (L.) Scop.] and dahlia (Dahlia sp.) plants showing typical symptoms of phytoplasma infection including yellowing, stunting, inflorescence and proliferation, were sampled; the presence of phytoplasma was confirmed by standard PCR using universal primers. RFLP analysis allowed classification of the detected phytoplasma strains CirYS, CirYS1 and DahlP within the 16SrXI group, the unique restriction profile F2nR2 fragment obtained in silico by iPhyClassifier indicated that they belong to the new 16SrXI-E subgroup. Genetic analysis of the 16S rRNA gene revealed that the studied strains shared less than 97.5% similarity with all of the previously described 'Candidatus Phytoplasma' species. The closest relatives are 'Candidatus Phytoplasma cynodontis' and 'Candidatus Phytoplasma oryzae' with 96.8% and 96.6% similarity. All strains studied bear three specific regions in the 16S rRNA gene, discriminating them from the other phytoplasma species. Phylogenetic analysis of the 16S rRNA and secA genes confirmed this specificity, as the creeping thistle and dahlia phytoplasma strains clustered in a distinguishable lineage group. The uniqueness of the genetic analysis agrees with the biological characterization of the studied phytoplasma strains, their host range, and geographical distribution. The strains only infect dicotyledonous plants in Europe, contrary to their closest relatives. Based on their unique properties, it could be concluded that the studied phytoplasma strains represent a discrete group that is proposed as a novel taxon 'Candidatus Phytoplasma cirsii', with strain CirYS as a reference strain.
authors: Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic.
authors: Dana
authors: D
authors: Šafárˇová
authors: Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic.
authors: Tomáš
authors: T
authors: Zemánek
authors: Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic.
authors: Pavla
authors: P
authors: Válová
authors: Department of Cell Biology and Genetics, Faculty of Science, Palacky University, Šlechtitelu˚ 27, 783 71, Olomouc, Czech Republic.
authors: Milan
authors: M
authors: Navrátil
mesh_terms: D031180:Cirsium / Q000382:microbiology*; D004269:DNA, Bacterial / Q000235:genetics; D005060:Europe; D008969:Molecular Sequence Data; D010802:Phylogeny; D045582:Phytoplasma / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D010935:Plant Diseases / Q000382:microbiology; D012150:Polymorphism, Restriction Fragment Length; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA
chemical_list: D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S