title: Steered molecular dynamics study reveals insights into the function of the repetitive B region of collagen- and fibrinogen-binding MSCRAMMs.
abstract: MSCRAMMs (microbial surface components recognizing adhesive matrix molecules) are modular proteins covalently anchored in the bacterial cell wall of many Gram-positive bacteria. The N-terminal region of most MSCRAMMs carries the ligand-binding domains (A region) which specifically target the host extracellular matrix (ECM) proteins such as collagen, fibrinogen and fibronectin. In Staphylococcus aureus Cna, the prototype collagen-binding MSCRAMM, the A region is followed by a repetitive B region which is found to be conserved among many Gram-positive bacteria. This conservation signifies an important functional role for the B region which is made of repetitive domains. It was suggested that this region could act as a 'stalk' as well as a 'spring' to present the ligand-binding A region, away from the bacterial surface. But there is no clear functional implication of this region available till date. Each repetitive domain in the B region possesses a variant of the Ig fold called the CnaB fold. Additionally, the B repeats are also paired and the pairs are clustered together. To investigate if the B domains have a function similar to the Ig domains in the I-band region of the giant muscle protein, titin, steered molecular dynamics simulations of one, two and four B repeats of Cna were carried out. The results of the simulations suggest that the B region could provide mechanical stability, extensibility and elasticity to Cna due to the CnaB fold as well as the clustered arrangement of their domains. This study thus provided further insights into the biological underpinnings of adhesin-host interaction.
authors: a Centre of Advanced Study in Crystallography and Biophysics , University of Madras , Guindy Campus, Chennai 600 025 , India.
authors: D S
authors: DS
authors: Jemima Beulin
authors: a Centre of Advanced Study in Crystallography and Biophysics , University of Madras , Guindy Campus, Chennai 600 025 , India.
authors: Karthe
authors: K
authors: Ponnuraj
mesh_terms: D018829:Adhesins, Bacterial / Q000737:chemistry*; D003094:Collagen / Q000737:chemistry*; D017124:Conserved Sequence; D005340:Fibrinogen / Q000737:chemistry*; D057927:Hydrophobic and Hydrophilic Interactions; D062105:Molecular Docking Simulation; D056004:Molecular Dynamics Simulation; D011487:Protein Conformation; D017510:Protein Folding; D054730:Protein Interaction Domains and Motifs; D058767:Protein Unfolding; D013329:Structure-Activity Relationship
chemical_list: D018829:Adhesins, Bacterial; C509820:MSCRAMM proteins, Staphylococcus; D005340:Fibrinogen; D003094:Collagen
keywords: CnaB fold; MSCRAMM; adhesin; collagen-binding; fibrinogen-binding; repetitive B region; steered molecular dynamics