title: [Evaluation of Gene Expression of Hexokinases in Colorectal Cancer with the Use of Bioinformatics Methods].
abstract: One of the hallmarks of cancer is the change of energy metabolism, mainly activation of glycolysis that occurs even at early stages of tumorigenesis. The glycolysis activation can be caused by overexpression of hexokinases, primarily HK1 and HK2. Colorectal cancer, which takes the third place in the cancer morbidity and mortality rates worldwide, is believed to be accompanied with overexpression of HK2, which is .considered a marker of poor prognosis. With the use of the developed CrossHub tool, we performed the analysis of the Cancer Genome Atlas RNA-Sequencing data, which, on the contrary, revealed the prevalence of the down-regulation of HK2 gene and only slight expression alterations in HK1 gene. The Cancer Genome Atlas is the largest resource in the field of molecular oncology that accumulated genomic, transcriptomic and methylomic data for thousands of sample of more than 20 cancers. The transcriptome analysis data for colorectal cancer (283 tumor samples and 41 matched normal samples) were in accord with the results of further qPCR expression level evaluation. Up-regulation of HK1 and HK2 genes was observed only in a part of samples: 12% for HK1 and 30% for HK2. At the same time, the HK2 mRNA level decrease was shown in 50% of cases. Correlation analysis revealed the consistency in HK1 and HK2 expression alterations (Spearman's rank correlation coefficient r(s) = 0.43, p < 0.01), that could be explained by common deregulation mechanisms of these genes in colorectal tumors. The HK3 expression level was significantly increased in 60% of samples. Most likely, just hexokinase 3 contributes significantly to the activation of glycolysis in colorectal cancer.
authors: G S
authors: GS
authors: Krasnov
authors: A A
authors: AA
authors: Dmitriev
authors: A F
authors: AF
authors: Sadtritdinova
authors: M S
authors: MS
authors: Fedorova
authors: A V
authors: AV
authors: Snezhkina
authors: N V
authors: NV
authors: Melnikova
authors: A V
authors: AV
authors: Poteryakhina
authors: K M
authors: KM
authors: Nyushko
authors: M M
authors: MM
authors: Belyakov
authors: A D
authors: AD
authors: Kaprin
authors: A R
authors: AR
authors: Zaretsky
authors: A V
authors: AV
authors: Kudryavtseva
mesh_terms: D015179:Colorectal Neoplasms / Q000201:enzymology / Q000235:genetics*; D019295:Computational Biology; D015972:Gene Expression Regulation, Neoplastic / Q000235:genetics; D006593:Hexokinase / Q000096:biosynthesis* / Q000737:chemistry / Q000235:genetics; D000071677:Histidine Kinase; D006801:Humans; D011494:Protein Kinases / Q000096:biosynthesis*; D012333:RNA, Messenger / Q000096:biosynthesis
chemical_list: D012333:RNA, Messenger; D011494:Protein Kinases; C472074:HK1 protein, human; D006593:Hexokinase; D000071677:Histidine Kinase