title: Using ancient DNA and coalescent-based methods to infer extinction.
abstract: DNA sequences extracted from preserved remains can add considerable resolution to inference of past population dynamics. For example, coalescent-based methods have been used to correlate declines in some arctic megafauna populations with habitat fragmentation during the last ice age. These methods, however, often fail to detect population declines preceding extinction, most likely owing to a combination of sparse sampling, uninformative genetic markers, and models that cannot account for the increasingly structured nature of populations as habitats decline. As ancient DNA research expands to include full-genome analyses, these data will provide greater resolution of the genomic consequences of environmental change and the genetic signatures of extinction.
authors: Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA 95064, USA.
authors: Dan
authors: D
authors: Chang
authors: Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, CA 95064, USA bashapir@ucsc.edu.
authors: Beth
authors: http://orcid.org/0000-0002-2733-7776
authors: B
authors: Shapiro
mesh_terms: D000818:Animals; D003247:Conservation of Natural Resources / Q000379:methods*; D004247:DNA / Q000032:analysis*; D053476:Extinction, Biological; D005580:Fossils; D016678:Genome; D007448:Invertebrates / Q000235:genetics; D010944:Plants / Q000235:genetics; D011157:Population Dynamics; D014714:Vertebrates / Q000235:genetics
chemical_list: D004247:DNA
keywords: ancient DNA; coalescent; demography; extinction; megafauna