title: Identification of genes differentially expressed during early interactions between the stem rot fungus (Sclerotium rolfsii) and peanut (Arachis hypogaea) cultivars with increasing disease resistance levels.
abstract: Sclerotium rolfsii, a destructive soil-borne fungal pathogen causes stem rot of the cultivated peanut, Arachis hypogaea. This study aimed to identify differentially expressed genes associated with peanut resistance and fungal virulence. Four peanut cultivars (A100-32, Georgia Green, GA-07W and York) with increasing resistance levels were inoculated with a virulent S. rolfsii strain to study the early plant-pathogen interaction. 454 sequencing was performed on RNAs from infected tissue collected at 4 days post inoculation, generating 225,793 high-quality reads. Normalized read counts and fold changes were calculated and statistical analysis used to identify differentially expressed genes. Several genes identified as differential in the RNA-seq experiment were selected based on functions of interest and real-time PCR employed to corroborate their differential expression. Expanding the analysis to include all four cultivars revealed a small but interesting set of genes showing colinearity between cultivar resistance and expression levels. This study identified a set of genes possibly related to pathogen response that may be useful marker assisted selection or transgenic disease control strategies. Additionally, a set of differentially expressed genes that have not been functionally characterized in peanut or other plants and warrant additional investigation were identified.
authors: Department of Plant Pathology, University of Georgia, Athens, GA, USA.
authors: Ansuya
authors: A
authors: Jogi
authors: Department of Plant Biology, University of Georgia, Athens, GA, USA.
authors: John W
authors: JW
authors: Kerry
authors: Department of Plant Pathology, University of Georgia, Athens, GA, USA.
authors: Timothy B
authors: TB
authors: Brenneman
authors: Department of Plant Biology, University of Georgia, Athens, GA, USA.
authors: James H
authors: JH
authors: Leebens-Mack
authors: Department of Plant Pathology, University of Georgia, Athens, GA, USA; USDA, ARS, Russell Research Center, Toxicology & Mycotoxin Research Unit, 950 College Station Road, Athens, GA 30605, USA. Electronic address: scott.gold@ars.usda.gov.
authors: Scott E
authors: SE
authors: Gold
mesh_terms: D010367:Arachis / Q000276:immunology / Q000382:microbiology*; D001487:Basidiomycota / Q000254:growth & development*; D060467:Disease Resistance; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant; D059014:High-Throughput Nucleotide Sequencing; D054884:Host-Pathogen Interactions; D010935:Plant Diseases / Q000276:immunology / Q000382:microbiology*; D060888:Real-Time Polymerase Chain Reaction
keywords: Arachis hypogaea; Differential gene expression; PR proteins; Real-time PCR; Sclerotium rolfsii