title: On the vibrational behavior of single- and double-walled carbon nanotubes under the physical adsorption of biomolecules in the aqueous environment: a molecular dynamics study.
abstract: The adsorption of biomolecules on the walls of carbon nanotubes (CNTs) in an aqueous environment is of great importance in the field of nanobiotechnology. In this study, molecular dynamics (MD) simulations were performed to understand the mechanical vibrational behavior of single- and double-walled carbon nanotubes (SWCNTs and DWCNTs) under the physical adsorption of four important biomolecules (L-alanine, guanine, thymine, and uracil) in vacuum and an aqueous environment. It was observed that the natural frequencies of these CNTs in vacuum reduce under the physical adsorption of biomolecules. In the aqueous environment, the natural frequency of each pure CNT decreased as compared to its natural frequency in vacuum. It was also found that the frequency shift for functionalized CNTs as compared to pure CNTs in the aqueous environment was dependent on the radius and the number of walls of the CNT, and could be positive or negative.
authors.affiliation: Department of Mechanical Engineering, University of Guilan, P.O. Box 3756, Rasht, Iran. shahram_ajori1366@yahoo.com.
authors.forename: S
authors.identifier: http://orcid.org/0000-0002-6662-978X
authors.initials: S
authors.lastname: Ajori
authors.affiliation: Department of Mechanical Engineering, University of Guilan, P.O. Box 3756, Rasht, Iran. r_ansari@guilan.ac.ir.
authors.forename: R
authors.initials: R
authors.lastname: Ansari
authors.affiliation: Department of Mechanical Engineering, University of Guilan, P.O. Box 3756, Rasht, Iran.
authors.forename: M
authors.initials: M
authors.lastname: Darvizeh
mesh_terms: D000327:Adsorption; D008958:Models, Molecular; D008968:Molecular Conformation; D056004:Molecular Dynamics Simulation; D037742:Nanotubes, Carbon / Q000737:chemistry*; D014867:Water / Q000737:chemistry*
chemical_list: D037742:Nanotubes, Carbon; D014867:Water
keywords: Biomolecules; Carbon nanotubes; Mechanical vibration; Molecular dynamics simulations; Noncovalent functionalization