title: Efficient DNP NMR of membrane proteins: sample preparation protocols, sensitivity, and radical location.
abstract: Although dynamic nuclear polarization (DNP) has dramatically enhanced solid-state NMR spectral sensitivities of many synthetic materials and some biological macromolecules, recent studies of membrane-protein DNP using exogenously doped paramagnetic radicals as polarizing agents have reported varied and sometimes surprisingly limited enhancement factors. This motivated us to carry out a systematic evaluation of sample preparation protocols for optimizing the sensitivity of DNP NMR spectra of membrane-bound peptides and proteins at cryogenic temperatures of ~110 K. We show that mixing the radical with the membrane by direct titration instead of centrifugation gives a significant boost to DNP enhancement. We quantify the relative sensitivity enhancement between AMUPol and TOTAPOL, two commonly used radicals, and between deuterated and protonated lipid membranes. AMUPol shows ~fourfold higher sensitivity enhancement than TOTAPOL, while deuterated lipid membrane does not give net higher sensitivity for the membrane peptides than protonated membrane. Overall, a ~100 fold enhancement between the microwave-on and microwave-off spectra can be achieved on lipid-rich membranes containing conformationally disordered peptides, and absolute sensitivity gains of 105-160 can be obtained between low-temperature DNP spectra and high-temperature non-DNP spectra. We also measured the paramagnetic relaxation enhancement of lipid signals by TOTAPOL and AMUPol, to determine the depths of these two radicals in the lipid bilayer. Our data indicate a bimodal distribution of both radicals, a surface-bound fraction and a membrane-bound fraction where the nitroxides lie at ~10 Å from the membrane surface. TOTAPOL appears to have a higher membrane-embedded fraction than AMUPol. These results should be useful for membrane-protein solid-state NMR studies under DNP conditions and provide insights into how biradicals interact with phospholipid membranes.
authors.affiliation: Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
authors.forename: Shu Y
authors.initials: SY
authors.lastname: Liao
authors.affiliation: Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
authors.forename: Myungwoon
authors.initials: M
authors.lastname: Lee
authors.affiliation: Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
authors.forename: Tuo
authors.initials: T
authors.lastname: Wang
authors.affiliation: Bruker Biospin, 15 Fortune Drive, Billerica, MA, 01821, USA.
authors.forename: Ivan V
authors.initials: IV
authors.lastname: Sergeyev
authors.affiliation: Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA. meihong@mit.edu.
authors.forename: Mei
authors.initials: M
authors.lastname: Hong
mesh_terms: D008563:Membrane Lipids / Q000737:chemistry; D008565:Membrane Proteins / Q000737:chemistry*; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods; D010455:Peptides / Q000737:chemistry; D013696:Temperature
chemical_list: D008563:Membrane Lipids; D008565:Membrane Proteins; D010455:Peptides
keywords: AMUPol; DNP; Influenza M2; Membrane proteins; Paramagnetic relaxation enhancement; Sensitivity enhancement; Solid-state NMR