title: Investigation of DNA binding, DNA photocleavage, topoisomerase I inhibition and antioxidant activities of water soluble titanium(IV) phthalocyanine compounds.
abstract: The binding mode of water soluble peripherally tetra-substituted titanium(IV) phthalocyanine (Pc) compounds Pc1, Pc2 and Pc3 with calf thymus (CT) DNA was investigated by using UV-Vis spectroscopy and thermal denaturation studies in this work. The results of DNA binding constants (Kb) and the changes in the thermal denaturation profile of DNA with the addition of Pc compounds indicated that Pc1, Pc2 and Pc3 are able to bind to CT-DNA with different binding affinities. DNA photocleavage studies of Pc compounds were performed in the absence and presence of oxidizing agents such as hydrogen peroxide (H2O2), ascorbic acid (AA) and 2-mercaptoethanol (ME) using the agarose gel electrophoresis method at irradiation 650 nm. According to the results of electrophoresis studies, Pc1, Pc2 and Pc3 cleaved of supercoiled pBR322 DNA via photocleavage pathway. The Pc1, Pc2 and Pc3 compounds were examined for topoisomerase I inhibition by measuring the relaxation of supercoiled pBR322 DNA. The all of Pc compounds inhibited topoisomerase I at 20 μM concentration. A series of antioxidant assays, including 2,2-diphenyl-1-picrylhydrazyl (DPPH) assay, superoxide radical scavenging (SOD) assay and metal chelating effect assay were performed for Pc1, Pc2 and Pc3 compounds. The results of antioxidant assays indicated that Pc1, Pc2 and Pc3 compounds have remarkable superoxide radical scavenging activities, moderate 2,2-diphenyl-1-picrylhydrazyl activities and metal chelating effect activities. All the experimental studies showed that Pc1, Pc2 and Pc3 compounds bind to CT-DNA via minor groove binding, cleave of supercoiled pBR322 DNA via photocleavage pathway, inhibit topoisomerase I and have remarkable superoxide radical scavenging activities. Thanks to these properties the Pc1, Pc2 and Pc3 compounds are suitable agents for photo dynamic therapy.
authors.affiliation: Karadeniz Technical University, Faculty of Pharmacy, Department of Biochemistry, Trabzon, Turkey. Electronic address: arzuozenozel@ktu.edu.tr.
authors.forename: Arzu
authors.initials: A
authors.lastname: Özel
authors.affiliation: Karadeniz Technical University, Faculty of Pharmacy, Department of Biochemistry, Trabzon, Turkey.
authors.forename: Burak
authors.initials: B
authors.lastname: Barut
authors.affiliation: Karadeniz Technical University, Faculty of Science, Department of Chemistry, Trabzon, Turkey.
authors.forename: Ümit
authors.initials: Ü
authors.lastname: Demirbaş
authors.affiliation: Karadeniz Technical University, Faculty of Science, Department of Chemistry, Trabzon, Turkey.
authors.forename: Zekeriya
authors.initials: Z
authors.lastname: Biyiklioglu
mesh_terms: D000975:Antioxidants / Q000494:pharmacology*; D004247:DNA / Q000378:metabolism*; D006868:Hydrolysis; D007211:Indoles / Q000737:chemistry / Q000494:pharmacology*; D054833:Isoindoles; D055668:Photochemical Processes; D012995:Solubility; D014025:Titanium / Q000737:chemistry*; D059004:Topoisomerase I Inhibitors / Q000494:pharmacology*
chemical_list: D000975:Antioxidants; D007211:Indoles; D054833:Isoindoles; D059004:Topoisomerase I Inhibitors; D004247:DNA; D014025:Titanium; C013647:phthalocyanine
keywords: Antioxidant; DNA-binding; DNA-cleavage; Phthalocyanines; Topoisomerase I inhibition