title: Calculating Free Energy Changes in Continuum Solvation Models.
abstract: We recently showed for a large data set of pKas and reduction potentials that free energies calculated directly within the SMD continuum model compares very well with corresponding thermodynamic cycle calculations in both aqueous and organic solvents [ Phys. Chem. Chem. Phys. 2015 , 17 , 2859 ]. In this paper, we significantly expand the scope of our study to examine the suitability of this approach for calculating general solution phase kinetics and thermodynamics, in conjunction with several commonly used solvation models (SMD-M062X, SMD-HF, CPCM-UAKS, and CPCM-UAHF) for a broad range of systems. This includes cluster-continuum schemes for pKa calculations as well as various neutral, radical, and ionic reactions such as enolization, cycloaddition, hydrogen and chlorine atom transfer, and SN2 and E2 reactions. On the basis of this benchmarking study, we conclude that the accuracies of both approaches are generally very similar-the mean errors for Gibbs free energy changes of neutral and ionic reactions are approximately 5 and 25 kJ mol(-1), respectively. In systems where there are significant structural changes due to solvation, as is the case for certain ionic transition states and amino acids, the direct approach generally afford free energy changes that are in better agreement with experiment.
authors.affiliation: Agency for Science, Technology and Research, Institute of High Performance Computing , 1 Fusionopolis Way, #16-16 Connexis, Singapore 138632.|Department of Chemistry, Yale University , P.O. Box 208107, New Haven, Connecticut 06520, United States.
authors.forename: Junming
authors.initials: J
authors.lastname: Ho
authors.affiliation: Chemistry Department, Brookhaven National Laboratory , Upton, New York 11973, United States.
authors.forename: Mehmed Z
authors.initials: MZ
authors.lastname: Ertem