title: Arginine deiminase pathway genes and arginine degradation variability in Oenococcus oeni strains.
abstract: Trace amounts of the carcinogenic ethyl carbamate can appear in wine as a result of a reaction between ethanol and citrulline, which is produced from arginine degradation by some bacteria used in winemaking. In this study, arginine deiminase (ADI) pathway genes were evaluated in 44 Oenococcus oeni strains from wines originating from several locations in order to establish the relationship between the ability of a strain to degrade arginine and the presence of related genes. To detect the presence of arc genes of the ADI pathway in O. oeni, pairs of primers were designed to amplify arcA, arcB, arcC and arcD1 sequences. All strains contained these four genes. The same primers were used to confirm the organization of these genes in an arcABCD1 operon. Nevertheless, considerable variability in the ability to degrade arginine among these O. oeni strains was observed. Therefore, despite the presence of the arc genes in all strains, the expression patterns of individual genes must be strain dependent and influenced by the different wine conditions. Additionally, the presence of arc genes was also determined in the 57 sequenced strains of O. oeni available in GenBank, and the complete operon was found in 83% of strains derived from wine. The other strains were found to lack the arcB, arcC and arcD genes, but all contained sequences homologous to arcA, and some of them had also ADI activity.
authors.affiliation: Departament de Bioquímica i Biotecnologia, Facultat d'Enologia, Universitat Rovira i Virgili, Tarragona, Catalonia, Spain.
authors.forename: Isabel
authors.initials: I
authors.lastname: Araque
authors.affiliation: Departament de Bioquímica i Biotecnologia, Facultat d'Enologia, Universitat Rovira i Virgili, Tarragona, Catalonia, Spain.
authors.forename: Joana
authors.initials: J
authors.lastname: Gil
authors.affiliation: Departament de Bioquímica i Biotecnologia, Facultat d'Enologia, Universitat Rovira i Virgili, Tarragona, Catalonia, Spain.
authors.forename: Ramon
authors.initials: R
authors.lastname: Carreté
authors.affiliation: Departament d'Enginyeria Química, ETSEQ, Universitat Rovira i Virgili, Tarragona, Catalonia, Spain.
authors.forename: Magda
authors.initials: M
authors.lastname: Constantí
authors.affiliation: Departament de Bioquímica i Biotecnologia, Facultat d'Enologia, Universitat Rovira i Virgili, Tarragona, Catalonia, Spain. albert.bordons@urv.cat.
authors.forename: Albert
authors.identifier: http://orcid.org/0000-0002-5320-8740
authors.initials: A
authors.lastname: Bordons
authors.affiliation: Departament de Bioquímica i Biotecnologia, Facultat d'Enologia, Universitat Rovira i Virgili, Tarragona, Catalonia, Spain.
authors.forename: Cristina
authors.initials: C
authors.lastname: Reguant
mesh_terms: D001120:Arginine / Q000378:metabolism*; D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism; D006867:Hydrolases / Q000235:genetics / Q000378:metabolism*; D056585:Oenococcus / Q000145:classification / Q000201:enzymology* / Q000235:genetics / Q000378:metabolism; D009876:Operon; D014920:Wine / Q000382:microbiology
chemical_list: D001426:Bacterial Proteins; D001120:Arginine; D006867:Hydrolases; C019723:arginine deiminase