title: Registered report: Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma.
abstract: The Reproducibility Project: Cancer Biology seeks to address growing concerns about reproducibility in scientific research by conducting replications of selected experiments from a number of high-profile papers in the field of cancer biology. The papers, which were published between 2010 and 2012, were selected on the basis of citations and Altmetric scores (Errington et al., 2014). This Registered Report describes the proposed replication plan of key experiments from 'Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma' by Castellarin and colleagues published in Genome Research in 2012 (Castellarin et al., 2012). The experiment to be replicated is reported in Figure 2. Here, Castellarin and colleagues performed a metagenomic analysis of colorectal carcinoma (CRC) to identify potential associations between inflammatory microorganisms and gastrointestinal cancers. They conducted quantitative real-time PCR on genomic DNA isolated from tumor and matched normal biopsies from a patient cohort and found that the overall abundance of Fusobacterium was 415 times greater in CRC versus adjacent normal tissue. These results confirmed earlier studies and provide evidence for a link between tissue-associated bacteria and tumorigenesis. The Reproducibility Project: Cancer Biology is a collaboration between the Center for Open Science and Science Exchange and the results of the replications will be published in eLife.
authors.affiliation: ARQ Genetics, Bastrop, United States.
authors.forename: John
authors.initials: J
authors.lastname: Repass
authors.affiliation: Harvard Stem Cell Institute, Cambridge, United States.
authors.forename: Nimet
authors.initials: N
authors.lastname: Maherali
authors.affiliation: University of Virginia, Charlottesville, United States.
authors.forename: Kate
authors.initials: K
authors.lastname: Owen
mesh_terms: D001706:Biopsy; D015179:Colorectal Neoplasms / Q000150:complications* / Q000473:pathology*; D004269:DNA, Bacterial / Q000235:genetics / Q000302:isolation & purification*; D005674:Fusobacterium Infections / Q000150:complications* / Q000453:epidemiology*; D016967:Fusobacterium nucleatum / Q000235:genetics / Q000302:isolation & purification*; D006801:Humans; D056186:Metagenomics; D015203:Reproducibility of Results
chemical_list: D004269:DNA, Bacterial
keywords: Reproducibility Project: Cancer Biology; colorectal carcinoma; fusobacterium nucleatum; human; human biology; medicine; methodolgy