title: Recent advances in quantitative high throughput and high content data analysis.
abstract: BACKGROUND
  High throughput screening has become a basic technique with which to explore biological systems. Advances in technology, including increased screening capacity, as well as methods that generate multiparametric readouts, are driving the need for improvements in the analysis of data sets derived from such screens.
  
  
  METHODS
  This article covers the recent advances in the analysis of high throughput screening data sets from arrayed samples, as well as the recent advances in the analysis of cell-by-cell data sets derived from image or flow cytometry application. Screening multiple genomic reagents targeting any given gene creates additional challenges and so methods that prioritize individual gene targets have been developed. The article reviews many of the open source data analysis methods that are now available and which are helping to define a consensus on the best practices to use when analyzing screening data.
  
  
  CONCLUSIONS
  As data sets become larger, and more complex, the need for easily accessible data analysis tools will continue to grow. The presentation of such complex data sets, to facilitate quality control monitoring and interpretation of the results will require the development of novel visualizations. In addition, advanced statistical and machine learning algorithms that can help identify patterns, correlations and the best features in massive data sets will be required. The ease of use for these tools will be important, as they will need to be used iteratively by laboratory scientists to improve the outcomes of complex analyses.
authors.affiliation: a Novartis Institute of Biomedical Research , Novartis - Developmental and Molecular Pathways (DMP) , Basel , Switzerland.
authors.forename: Ioannis K
authors.initials: IK
authors.lastname: Moutsatsos
authors.affiliation: a Novartis Institute of Biomedical Research , Novartis - Developmental and Molecular Pathways (DMP) , Basel , Switzerland.
authors.forename: Christian N
authors.initials: CN
authors.lastname: Parker
mesh_terms: D000465:Algorithms; D055808:Drug Discovery / Q000379:methods*; D005434:Flow Cytometry / Q000379:methods*; D023281:Genomics; D057166:High-Throughput Screening Assays / Q000379:methods*; D006801:Humans; D000069550:Machine Learning; D011786:Quality Control
keywords: Data analysis; High Content Screening; High Throughput Screening; qHTS