title: Supporting data for the MS identification of distinct transferrin glycopeptide glycoforms and citrullinated peptides associated with inflammation or autoimmunity.
abstract: This data article presents the results of all the statistical analyses applied to the relative intensities of the detected 2D-DiGE protein spots for each of the 3 performed DiGE experiments. The data reveals specific subsets of protein spots with significant differences between WT and CD38-deficient mice with either Collagen-induced arthritis (CIA), or with chronic inflammation induced by CFA, or under steady-state conditions. This article also shows the MS data analyses that allowed the identification of the protein species which serve to discriminate the different experimental groups used in this study. Moreover, the article presents MS data on the citrullinated peptides linked to specific protein species that were generated in CIA(+) or CFA-treated mice. Lastly, this data article provides MS data on the efficiency of the analyses of the transferrin (Tf) glycopeptide glycosylation pattern in spleen and serum from CIA(+) mice and normal controls. The data supplied in this work is related to the research article entitled "identification of multiple transferrin species in spleen and serum from mice with collagen-induced arthritis which may reflect changes in transferrin glycosylation associated with disease activity: the role of CD38" [1]. All mass spectrometry data have been deposited to the ProteomeXchange Consortium via the PRIDE partner repository with identifiers PRIDE: PXD002644, PRIDE: PXD002643, PRIDE: PXD003183 and PRIDE: PXD003163.
authors.affiliation: Instituto de Parasitología y Biomedicina "López-Neyra" (IPBLN), CSIC, Armilla, Granada, Spain.
authors.forename: A
authors.initials: A
authors.lastname: Rosal-Vela
authors.affiliation: Departament de Química Analítica, Universitat de Barcelona, Spain.
authors.forename: A
authors.initials: A
authors.lastname: Barroso
authors.affiliation: Departament de Química Analítica, Universitat de Barcelona, Spain.
authors.forename: E
authors.initials: E
authors.lastname: Giménez
authors.affiliation: Departament de Química Analítica, Universitat de Barcelona, Spain.
authors.forename: S
authors.initials: S
authors.lastname: García-Rodríguez
authors.affiliation: Unidad de Proteómica, IPBLN, CSIC, Armilla, Granada, Spain.
authors.forename: V
authors.initials: V
authors.lastname: Longobardo
authors.affiliation: Facultad de Medicina, Universidad de Cantabria, Santander, Spain.
authors.forename: J
authors.initials: J
authors.lastname: Postigo
authors.affiliation: Facultad de Medicina, Universidad de Cantabria, Santander, Spain.
authors.forename: M
authors.initials: M
authors.lastname: Iglesias
authors.affiliation: Unidad de Proteómica, IPBLN, CSIC, Armilla, Granada, Spain.
authors.forename: A
authors.initials: A
authors.lastname: Lario
authors.affiliation: Facultad de Medicina, Universidad de Cantabria, Santander, Spain.
authors.forename: J
authors.initials: J
authors.lastname: Merino
authors.affiliation: Instituto de Biomedicina y Biotecnología de Cantabria, CSIC, Santander, Spain.
authors.forename: R
authors.initials: R
authors.lastname: Merino
authors.affiliation: Instituto de Parasitología y Biomedicina "López-Neyra" (IPBLN), CSIC, Armilla, Granada, Spain.
authors.forename: M
authors.initials: M
authors.lastname: Zubiaur
authors.affiliation: Departament de Química Analítica, Universitat de Barcelona, Spain.
authors.forename: V
authors.initials: V
authors.lastname: Sanz-Nebot
authors.affiliation: Instituto de Parasitología y Biomedicina "López-Neyra" (IPBLN), CSIC, Armilla, Granada, Spain.
authors.forename: J
authors.initials: J
authors.lastname: Sancho
keywords: Arthritis; CD38; Citrullination; Glycosylation; Inflammation; Protein species; Transferrin