title: Pacificimonas aurantium sp. nov., Isolated from the Seawater of the Pacific Ocean.
abstract: A Gram-negative bacterium, denoted JLT2012(T), was isolated from the surface water of the Pacific Ocean. This aerobic bacterium was rod shaped and devoid of flagella, displayed gliding motility, and grew in characteristic orange colonies. The bacterium contained ubiquinone Q-10 as the major respiratory quinone, and spermidine and spermine as the major polyamine compounds. The dominant fatty acids were C18:1ω7c and/or C18:1ω6c (34.7 %), C16:0 (21.3 %), and C18:0 (15.9 %), whereas the polar lipids consisted mainly of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, four sphingoglycolipids, and several unknown glycolipids. The G + C content DNA was found to be 65.5 mol%. Comparative 16S rRNA gene sequence analysis revealed that strain JLT2012(T) formed a distinct lineage within the genus Pacificimonas (formerly known as Pacificamonas) and shared the highest sequence similarity with the type strain of Pacificimonas flava JLT2015(T) (96.0 %). Data combined from different studies on the phenotypic, phylogenetic, and genomic characteristics indicated that strain JLT2012(T) is a representative of a novel species within Pacificimonas for which the name Pacificimonas aurantium sp. nov. (type strain JLT2012(T)=LMG 27361(T)=CGMCC 1.12399(T)) is proposed.
authors.affiliation: State Key Laboratory for Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 361005, People's Republic of China.
authors.forename: Shuhui
authors.initials: S
authors.lastname: Li
authors.affiliation: State Key Laboratory for Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 361005, People's Republic of China.
authors.forename: Wenchu
authors.initials: W
authors.lastname: Zhou
authors.affiliation: State Key Laboratory for Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 361005, People's Republic of China.
authors.forename: Dan
authors.initials: D
authors.lastname: Lin
authors.affiliation: State Key Laboratory for Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 361005, People's Republic of China. tangkai@xmu.edu.cn.
authors.forename: Kai
authors.initials: K
authors.lastname: Tang
authors.affiliation: State Key Laboratory for Marine Environmental Science, Institute of Marine Microbes and Ecospheres, Xiamen University, Xiamen, 361005, People's Republic of China.
authors.forename: Nianzhi
authors.initials: N
authors.lastname: Jiao
mesh_terms: D015373:Bacterial Typing Techniques; D001482:Base Composition; D004269:DNA, Bacterial / Q000235:genetics; D005227:Fatty Acids / Q000737:chemistry / Q000378:metabolism; D006088:Gram-Negative Aerobic Bacteria / Q000145:classification / Q000235:genetics / Q000302:isolation & purification* / Q000378:metabolism; D010140:Pacific Ocean; D010802:Phylogeny; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012623:Seawater / Q000382:microbiology*
chemical_list: D004269:DNA, Bacterial; D005227:Fatty Acids; D012336:RNA, Ribosomal, 16S