title: A novel N-terminal degradation reaction of peptides via N-amidination.
abstract: The cleavage of amide bonds requires considerable energy. It is difficult to cleave the amide bonds in peptides at room temperature, whereas ester bonds are cleaved easily. If peptide bonds can be selectively cleaved at room temperature, it will become a powerful tool for life science research, peptide prodrug, and tissue-targeting drug delivery systems. To cleave a specific amide bond at room temperature, the decomposition reaction of arginine methyl ester was investigated. Arginine methyl ester forms a dimer; the dimer releases a heterocyclic compound and ornithine methyl ester at room temperature. We designed and synthesized N-amidinopeptides based on the decomposition reaction of arginine methyl ester. Alanyl-alanine anilide was used as the model peptide and could be converted into N-degraded peptide, alanine anilide, via an N-amidination reaction at close to room temperature. Although the cleavage rate in pH 7.4 phosphate buffered saline (PBS) at 37°C was slow (t1/2=35.7h), a rapid cleavage rate was observed in 2% NaOH aq (t1/2=1.5min). To evaluate the versatility of this reaction, a series of peptides with Lys, Glu, Ser, Cys, Tyr, Val, and Pro residue at the N-terminal were synthesized; they showed rapid cleavage rates of t1/2 values from 1min to 10min.
authors.affiliation: Medicinal Chemistry Laboratory, Kobe Pharmaceutical University, Motoyamakita, Higashinada, Kobe 658-8558, Japan. Electronic address: pynden@gmail.com.
authors.forename: Yoshio
authors.initials: Y
authors.lastname: Hamada
mesh_terms: D000409:Alanine / Q000737:chemistry*; D000577:Amides / Q000737:chemistry*; D000595:Amino Acid Sequence; D000813:Anilides / Q000737:chemistry*; D001120:Arginine / Q000031:analogs & derivatives* / Q000737:chemistry; D019281:Dimerization; D004151:Dipeptides / Q000737:chemistry*; D010455:Peptides / Q000737:chemistry*
chemical_list: D000577:Amides; D000813:Anilides; D004151:Dipeptides; D010455:Peptides; C026512:arginine methyl ester; C002956:alanylalanine; D001120:Arginine; D000409:Alanine
keywords: Amide bond cleavage; Edman degradation; N-Amidinopeptide; N-amidination; N-terminal degradation