title: In silico dissection of Type VII Secretion System components across bacteria: New directions towards functional characterization.
abstract: Type VII Secretion System (T7SS) is one of the factors involved in virulence of Mycobacterium tuberculosis H37Rv. Numerous research efforts have been made in the last decade towards characterizing the components of this secretion system. An extensive genome-wide analysis through compilation of isolated information is required to obtain a global view of diverse characteristics and pathogenicity-related aspects of this machinery. The present study suggests that differences in structural components (of T7SS) between Actinobacteria and Firmicutes, observed earlier in a few organisms, is indeed a global trend. A few hitherto uncharacterized T7SS-like clusters have been identified in the pathogenic bacteria Enterococcus faecalis, Saccharomonospora viridis, Streptococcus equi, Streptococcus gordonii and Streptococcus sanguinis. Experimental verification of these clusters can shed lights on their role in bacterial pathogenesis. Similarly, verification of the identified variants of T7SS clusters consisting additional membrane components may help in unraveling new mechanism of protein translocation through T7SS. A database of various components of T7SS has been developed to facilitate easy access and interpretation of T7SS related data.
authors.affiliation: Bio-Sciences R and D Division, TCS Innovation Labs, Tata Research Development and Design Centre, Tata Consultancy Service Ltd., Pune 411 013, India.
authors.forename: Chandrani
authors.initials: C
authors.lastname: Das
authors.forename: Tarini Shankar
authors.initials: TS
authors.lastname: Ghosh
authors.forename: Sharmila S
authors.initials: SS
authors.lastname: Mande
mesh_terms: D039903:Actinobacteria / Q000235:genetics; D001426:Bacterial Proteins / Q000737:chemistry / Q000235:genetics*; D003198:Computer Simulation; D000068536:Bacillota / Q000235:genetics; D016680:Genome, Bacterial; D006801:Humans; D008390:Markov Chains; D009169:Mycobacterium tuberculosis / Q000737:chemistry / Q000235:genetics* / Q000472:pathogenicity; D011487:Protein Conformation; D014376:Tuberculosis / Q000235:genetics / Q000382:microbiology; D000069377:Type VII Secretion Systems / Q000737:chemistry / Q000235:genetics*
chemical_list: D001426:Bacterial Proteins; D000069377:Type VII Secretion Systems