title: Whole genome sequence of Pantoea ananatis R100, an antagonistic bacterium isolated from rice seed.
abstract: Pantoea ananatis is a group of bacteria, which was first reported as plant pathogen. Recently, several papers also described its biocontrol ability. In 2003, P. ananatis R100, which showed strong antagonism against several plant pathogens, was isolated from rice seeds. In this study, whole genome sequence of this strain was determined by SMRT Cell technology. The total genome size of R100 is 4,857,861bp with 4659 coding genes (CDS), 82 tRNAs and 22 rRNAs. The genome sequence of R100 may shed a light on the research of antagonism P. ananatis.
authors.affiliation: State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 310006, PR China.
authors.forename: Liwen
authors.initials: L
authors.lastname: Wu
authors.affiliation: State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 310006, PR China; Agricultural Genomes Institute at Shenzhen, Chiese Academy of Agricultural Sciences, Shenzhen 518120, PR China.
authors.forename: Ruifang
authors.initials: R
authors.lastname: Liu
authors.affiliation: State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 310006, PR China.
authors.forename: Yaofang
authors.initials: Y
authors.lastname: Niu
authors.affiliation: State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 310006, PR China; Agricultural Genomes Institute at Shenzhen, Chiese Academy of Agricultural Sciences, Shenzhen 518120, PR China.
authors.forename: Haiyan
authors.initials: H
authors.lastname: Lin
authors.affiliation: State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 310006, PR China.
authors.forename: Weijun
authors.initials: W
authors.lastname: Ye
authors.affiliation: State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 310006, PR China. Electronic address: guolongb@mail.hz.zj.cn.
authors.forename: Longbiao
authors.initials: L
authors.lastname: Guo
authors.affiliation: State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 310006, PR China. Electronic address: huxingmingx@126.com.
authors.forename: Xingming
authors.initials: X
authors.lastname: Hu
mesh_terms: D001482:Base Composition; D059646:Genome Size; D016680:Genome, Bacterial; D012275:Oryza / Q000382:microbiology*; D020636:Pantoea / Q000235:genetics / Q000302:isolation & purification*; D012335:RNA, Ribosomal / Q000235:genetics; D012343:RNA, Transfer / Q000235:genetics; D012639:Seeds / Q000382:microbiology; D017422:Sequence Analysis, DNA / Q000379:methods*
chemical_list: D012335:RNA, Ribosomal; D012343:RNA, Transfer
keywords: Calicheamicin; Oxazolomycin; Pacbio; Pantoea ananatis; Secondary metabolism