title: The Alzheimer's disease Aβ peptide binds to the anionic DMPS lipid bilayer.
abstract: We have applied isobaric-isothermal replica exchange molecular dynamics (REMD) and the all-atom explicit water model to study binding of Aβ10-40 peptide to the anionic DMPS bilayer. To provide comparison with a zwitterionic bilayer, we used our previous REMD simulations probing binding of the same peptide to the DMPC bilayer. Using two sets of simulations, we comparatively analyzed the equilibrium Aβ conformational ensemble, peptide-bilayer interactions, and changes in the bilayer structure induced by Aβ binding. Our results are six-fold. (1) Binding to the DMPS bilayer triggers the formation of stable helix in the Aβ C-terminal, although the helix-inducing effect caused by DMPS lipids is weaker than that of DMPC. (2) Compared to the DMPC-bound Aβ monomer, the anionic bilayer weakens intrapeptide interactions, particularly, formed by charged amino acids. (3) Binding of Aβ peptide to the DMPS bilayer is primarily governed by electrostatic interactions between charged amino acids and charged lipid groups. In contrast, these interactions play minor role in Aβ binding to the DMPC bilayer. (4) Aβ peptide generally resides on the DMPS bilayer surface causing relatively minor bilayer thinning. The opposite scenario applies to Aβ binding to the DMPC bilayer. (5) In contrast to DMPC simulations, Aβ largely expels anionic lipids from its binding "footprint" forming a ring of charged amino acids mixed with charged lipid groups around the peptide. (6) Aβ binding disorders proximal DMPS lipids more strongly than their DMPC counterparts. Our simulations show that Aβ monomers fail to perturb anionic or zwitterionic bilayers across both leaflets.
authors.affiliation: School of Systems Biology and Computational Materials Science Center, George Mason University, Manassas, VA 20110, United States.
authors.forename: Christopher
authors.initials: C
authors.lastname: Lockhart
authors.affiliation: School of Systems Biology and Computational Materials Science Center, George Mason University, Manassas, VA 20110, United States. Electronic address: dklimov@gmu.edu.
authors.forename: Dmitri K
authors.initials: DK
authors.lastname: Klimov
mesh_terms: D000544:Alzheimer Disease / Q000378:metabolism*; D000595:Amino Acid Sequence; D016229:Amyloid beta-Peptides / Q000737:chemistry / Q000378:metabolism*; D000838:Anions; D004134:Dimyristoylphosphatidylcholine / Q000378:metabolism*; D008051:Lipid Bilayers; D056004:Molecular Dynamics Simulation; D008969:Molecular Sequence Data; D010446:Peptide Fragments / Q000737:chemistry / Q000378:metabolism*; D010718:Phosphatidylserines / Q000378:metabolism*; D011487:Protein Conformation
chemical_list: D016229:Amyloid beta-Peptides; D000838:Anions; D008051:Lipid Bilayers; D010446:Peptide Fragments; D010718:Phosphatidylserines; C000593264:amyloid beta-protein (10-40); C042859:dimyristoylphosphatidylserine; D004134:Dimyristoylphosphatidylcholine
keywords: Alzheimer's disease; Aβ peptide; DMPS lipid bilayer; Isobaric–isothermal replica exchange; Molecular dynamics