title: Characterization of bacterial communities in lithobionts and soil niches from Victoria Valley, Antarctica.
abstract: Here we provide the first exploration of microbial diversity from three distinct Victoria Valley edaphic habitats, namely lithobionts (hypoliths, endoliths) and surface soils. Using a combination of terminal restriction fragment length polymorphism (T-RFLP) analysis and 16S rRNA gene amplicon pyrosequencing we assess community structure and diversity patterns, respectively. Our analysis revealed that habitat type (endolithic versus hypolithic versus surface soils) significantly influenced bacterial community composition, even though dominant phyla such as Actinobacteria (41% of total reads) were common to all samples. Consistent with previous surveys in other Dry Valley ecosystems, we found that lithobionts were colonized by a few highly dominant phylotypes (such asGemmatimonasandLeptolyngbya). Our analyses also show that soil bacteria were more diverse and evenly distributed than initially expected based on previous evidence. In contrast to total bacteria, the distribution of Cyanobacteria was not strongly influenced by habitat type, although soil- and endolith-specific cyanobacterial lineages were found. The detection of cyanobacterial lineages in these habitats appears to be influenced by the dispersal of aquatic inocula from lacustrine communities or benthic mats which are abundant in Victoria Valley. Together, our results provide insights into the phylogenetic variation and community structure across niche habitats in Victoria Valley.
authors.affiliation: Department of Genetics, Centre for Microbial Ecology and Genomics, University of Pretoria, Lynwood Road, Pretoria 0028, South Africa.
authors.forename: Marc W
authors.initials: MW
authors.lastname: Van Goethem
authors.affiliation: Department of Genetics, Centre for Microbial Ecology and Genomics, University of Pretoria, Lynwood Road, Pretoria 0028, South Africa.
authors.forename: Thulani P
authors.initials: TP
authors.lastname: Makhalanyane
authors.affiliation: Department of Genetics, Centre for Microbial Ecology and Genomics, University of Pretoria, Lynwood Road, Pretoria 0028, South Africa.
authors.forename: Angel
authors.initials: A
authors.lastname: Valverde
authors.affiliation: Department of Biological Sciences, University of Waikato, Private Bag 3105, Hamilton 3120, New Zealand.
authors.forename: Stephen C
authors.initials: SC
authors.lastname: Cary
authors.affiliation: Department of Genetics, Centre for Microbial Ecology and Genomics, University of Pretoria, Lynwood Road, Pretoria 0028, South Africa don.cowan@up.ac.za.
authors.forename: Don A
authors.initials: DA
authors.lastname: Cowan
mesh_terms: D039903:Actinobacteria / Q000145:classification / Q000235:genetics*; D000864:Antarctic Regions; D001483:Base Sequence; D000458:Cyanobacteria / Q000145:classification / Q000235:genetics*; D017753:Ecosystem; D059013:Microbial Consortia / Q000235:genetics*; D010802:Phylogeny; D012150:Polymorphism, Restriction Fragment Length / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D012336:RNA, Ribosomal, 16S; D012987:Soil
keywords: Antarctica; Cyanobacteria; bacteria; endolith; hypolith; soil