title: Experimental and Computational Evidence for a Loose Transition State in Phosphoroimidazolide Hydrolysis.
abstract: Phosphoroimidazolides play a critical role in several enzymatic phosphoryl transfer reactions and have been studied extensively as activated monomers for nonenzymatic nucleic acid replication, but the detailed mechanisms of these phosphoryl transfer reactions remain elusive. Some aspects of the mechanism can be deduced by studying the hydrolysis reaction, a simpler system that is amenable to a thorough mechanistic treatment. Here we characterize the transition state of phosphoroimidazolide hydrolysis by kinetic isotope effect (KIE) and linear free energy relationship (LFER) measurements, and theoretical calculations. The KIE and LFER observations are best explained by calculated loose transition structures with extensive scissile bond cleavage. These three-dimensional models of the transition state provide the basis for future mechanistic investigations of phosphoroimidazolide reactions.
authors.affiliation: Howard Hughes Medical Institute, Department of Molecular Biology and Center for Computational and Integrative Biology, Massachusetts General Hospital , Boston, Massachusetts 02114, United States.
authors.forename: Li
authors.initials: L
authors.lastname: Li
authors.affiliation: Howard Hughes Medical Institute, Department of Molecular Biology and Center for Computational and Integrative Biology, Massachusetts General Hospital , Boston, Massachusetts 02114, United States.
authors.forename: Victor S
authors.initials: VS
authors.lastname: Lelyveld
authors.affiliation: Howard Hughes Medical Institute, Department of Molecular Biology and Center for Computational and Integrative Biology, Massachusetts General Hospital , Boston, Massachusetts 02114, United States.
authors.forename: Noam
authors.initials: N
authors.lastname: Prywes
authors.affiliation: Howard Hughes Medical Institute, Department of Molecular Biology and Center for Computational and Integrative Biology, Massachusetts General Hospital , Boston, Massachusetts 02114, United States.
authors.forename: Jack W
authors.initials: JW
authors.lastname: Szostak
mesh_terms: D003198:Computer Simulation; D006868:Hydrolysis; D048289:Imidazolidines / Q000737:chemistry*; D008956:Models, Chemical; D015394:Molecular Structure; D010766:Phosphorylation
chemical_list: D048289:Imidazolidines