title: Stochastic Formation of Fibrillar and Amorphous Superoxide Dismutase Oligomers Linked to Amyotrophic Lateral Sclerosis.
abstract: Recent reports suggest that the nucleation and propagation of oligomeric superoxide dismutase-1 (SOD1) is effectively stochastic in vivo and in vitro. This perplexing kinetic variability-observed for other proteins and frequently attributed to experimental error-plagues attempts to discern how SOD1 mutations and post-translational modifications linked to amyotrophic lateral sclerosis (ALS) affect SOD1 aggregation. This study used microplate fluorescence spectroscopy and dynamic light scattering to measure rates of fibrillar and amorphous SOD1 aggregation at high iteration (ntotal = 1.2 × 10(3)). Rates of oligomerization were intrinsically irreproducible and populated continuous probability distributions. Modifying reaction conditions to mimic random and systematic experimental error could not account for kinetic outliers in standard assays, suggesting that stochasticity is not an experimental artifact, rather an intrinsic property of SOD1 oligomerization (presumably caused by competing pathways of oligomerization). Moreover, mean rates of fibrillar and amorphous nucleation were not uniformly increased by mutations that cause ALS; however, mutations did increase kinetic noise (variation) associated with nucleation and propagation. The stochastic aggregation of SOD1 provides a plausible statistical framework to rationalize how a pathogenic mutation can increase the probability of oligomer nucleation within a single cell, without increasing the mean rate of nucleation across an entire population of cells.
authors.affiliation: Department of Chemistry and Biochemistry, and ‡Institute of Biomedical Studies, Baylor University , Waco, Texas 76798-7348, United States.
authors.forename: Alireza
authors.initials: A
authors.lastname: Abdolvahabi
authors.affiliation: Department of Chemistry and Biochemistry, and ‡Institute of Biomedical Studies, Baylor University , Waco, Texas 76798-7348, United States.
authors.forename: Yunhua
authors.initials: Y
authors.lastname: Shi
authors.affiliation: Department of Chemistry and Biochemistry, and ‡Institute of Biomedical Studies, Baylor University , Waco, Texas 76798-7348, United States.
authors.forename: Aleksandra
authors.initials: A
authors.lastname: Chuprin
authors.affiliation: Department of Chemistry and Biochemistry, and ‡Institute of Biomedical Studies, Baylor University , Waco, Texas 76798-7348, United States.
authors.forename: Sanaz
authors.initials: S
authors.lastname: Rasouli
authors.affiliation: Department of Chemistry and Biochemistry, and ‡Institute of Biomedical Studies, Baylor University , Waco, Texas 76798-7348, United States.
authors.forename: Bryan F
authors.initials: BF
authors.lastname: Shaw
mesh_terms: D000690:Amyotrophic Lateral Sclerosis / Q000378:metabolism*; D003300:Copper / Q000378:metabolism; D004220:Disulfides / Q000378:metabolism*; D006801:Humans; D007700:Kinetics; D009154:Mutation / Q000235:genetics; D011499:Protein Processing, Post-Translational / Q000235:genetics / Q000502:physiology*; D013050:Spectrometry, Fluorescence / Q000379:methods; D013482:Superoxide Dismutase / Q000378:metabolism*; D000072105:Superoxide Dismutase-1 / Q000378:metabolism*
chemical_list: D004220:Disulfides; D003300:Copper; D013482:Superoxide Dismutase; D000072105:Superoxide Dismutase-1
keywords: Copper; amyloid; amyotrophic lateral sclerosis; oligomerization; protein aggregation; zinc