title: Genetic diversity and population structure of Brassica oleracea germplasm in Ireland using SSR markers.
abstract: The most economically important Brassica oleracea species is endangered in Ireland, with no prior reported genetic characterization studies. This study assesses the genetic diversity, population structure and relationships of B. oleracea germplasm in Ireland using microsatellite (SSRs) markers. A total of 118 individuals from 25 accessions of Irish B. oleracea were genotyped. The SSR loci used revealed a total of 47 alleles. The observed heterozygosity (0.699) was higher than the expected one (0.417). Moreover, the average values of fixation indices (F) were negative, indicating excess of heterozygotes in all accessions. Polymorphic information content (PIC) values of SSR loci ranged from 0.27 to 0.66, with an average of 0.571, and classified 10 loci as informative markers (PIC>0.5) to differentiate among the accessions studied. The genetic differentiation among accessions showed that 27.1% of the total genetic variation was found among accessions, and 72.9% of the variation resided within accessions. The averages of total heterozygosity (H(T)) and intra-accession genetic diversity (H(S)) were 0.577 and 0.442, respectively. Cluster analysis of SSR data distinguished among kale and Brussels sprouts cultivars. This study provided a new insight into the exploitation of the genetically diverse spring cabbages accessions, revealing a high genetic variation, as potential resources for future breeding programs. SSR loci were effective for differentiation among the accessions studied.
authors.affiliation: School of Food Science and Environmental Health, College of Sciences, Dublin Institute of Technology (DIT), Dublin, Ireland; Botany Department, Faculty of Science, Tanta University, Tanta, Egypt. Electronic address: mohamed.elesawi@science.tanta.edu.eg.
authors.forename: Mohamed A
authors.initials: MA
authors.lastname: El-Esawi
authors.affiliation: Department of Science and Health, Institute of Technology, Carlow, Ireland.
authors.forename: Kieran
authors.initials: K
authors.lastname: Germaine
authors.affiliation: School of Food Science and Environmental Health, College of Sciences, Dublin Institute of Technology (DIT), Dublin, Ireland.
authors.forename: Paula
authors.initials: P
authors.lastname: Bourke
authors.affiliation: School of Food Science and Environmental Health, College of Sciences, Dublin Institute of Technology (DIT), Dublin, Ireland.
authors.forename: Renee
authors.initials: R
authors.lastname: Malone
mesh_terms: D000483:Alleles; D001937:Brassica / Q000235:genetics*; D016000:Cluster Analysis; D056727:Endangered Species; D014644:Genetic Variation; D005838:Genotype; D007494:Ireland; D018895:Microsatellite Repeats / Q000235:genetics*; D011110:Polymorphism, Genetic; D000068098:Seed Bank
keywords: Brassica oleracea; Genetic diversity; Population structure; Relationships; SSR markers