title: Analysis of copy number variations in Mexican Holstein cattle using axiom genome-wide Bos 1 array.
abstract: Recently, for copy number variation (CNV) analysis, bovine researchers have focused mainly on the use of genome-wide SNP genotyping arrays. One of the highest densities commercially available SNPchips for cattle is the Affymetrix axiom genome-wide Bos 1, which assays 648,315 informative SNPs across the whole bovine genome. Here, we describe the microarray data, quality controls and validation implemented in a study published in Genetics and Molecular Research Journal in 2015 [1]. The microarray raw data has been deposited into Gene Expression Omnibus under accession #GSE54813.
authors.affiliation: Sonora State University, S.L.R.C., Sonora, México; Faculty of Engineering Mexicali, Autonomous University of Baja California, BC, Mexico.
authors.forename: Ricardo
authors.initials: R
authors.lastname: Salomon-Torres
authors.affiliation: Laboratory of Bioinformatics and Biofotonics, Engineering Institute, Autonomous University of Baja California, BC, Mexico.
authors.forename: Rafael
authors.initials: R
authors.lastname: Villa-Angulo
authors.affiliation: Laboratory of Bioinformatics and Biofotonics, Engineering Institute, Autonomous University of Baja California, BC, Mexico.
authors.forename: Carlos
authors.initials: C
authors.lastname: Villa-Angulo
keywords: Axiom genome-wide Bos 1 array; Bioinformatics; Copy number variation; Holstein cattle; PennCNV; SNP