title: RSIADB, a collective resource for genome and transcriptome analyses in Rhizoctonia solani AG1 IA.
abstract: Rice [Oryza sativa (L.)] feeds more than half of the world's population. Rhizoctonia solaniis a major fungal pathogen of rice causing extreme crop losses in all rice-growing regions of the world. R. solani AG1 IA is a major cause of sheath blight in rice. In this study, we constructed a comprehensive and user-friendly web-based database, RSIADB, to analyse its draft genome and transcriptome. The database was built using the genome sequence (10,489 genes) and annotation information for R. solani AG1 IA. A total of six RNAseq samples of R. solani AG1 IA were also analysed, corresponding to 10, 18, 24, 32, 48 and 72 h after infection of rice leaves. The RSIADB database enables users to search, browse, and download gene sequences for R. solani AG1 IA, and mine the data using BLAST, Sequence Extractor, Browse and Construction Diagram tools that were integrated into the database. RSIADB is an important genomic resource for scientists working with R. solani AG1 IA and will assist researchers in analysing the annotated genome and transcriptome of this pathogen. This resource will facilitate studies on gene function, pathogenesis factors and secreted proteins, as well as provide an avenue for comparative analyses of genes expressed during different stages of infection. Database URL:http://genedenovoweb.ticp.net:81/rsia/index.php.
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China aipingzh@163.com.
authors.forename: Lei
authors.initials: L
authors.lastname: Chen
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China.
authors.forename: Peng
authors.initials: P
authors.lastname: Ai
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China.
authors.forename: Jinfeng
authors.initials: J
authors.lastname: Zhang
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China.
authors.forename: Qiming
authors.initials: Q
authors.lastname: Deng
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China.
authors.forename: Shiquan
authors.initials: S
authors.lastname: Wang
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China.
authors.forename: Shuangcheng
authors.initials: S
authors.lastname: Li
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China.
authors.forename: Jun
authors.initials: J
authors.lastname: Zhu
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China.
authors.forename: Ping
authors.initials: P
authors.lastname: Li
authors.affiliation: Rice Research Institute of Sichuan Agricultural University, Chengdu, 611130, ChinaKey laboratory of Sichuan Crop Major Disease, Sichuan Agricultural University, Chengdu, 611130, ChinaKey Laboratory of Southwest Crop Gene Resource and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Ya'an, 625014, China aipingzh@163.com.
authors.forename: Aiping
authors.initials: A
authors.lastname: Zheng
mesh_terms: D030541:Databases, Genetic; D020869:Gene Expression Profiling; D016681:Genome, Fungal; D012232:Rhizoctonia / Q000235:genetics*; D057386:Search Engine; D014584:User-Computer Interface