title: Exploiting nongenetic cell-to-cell variation for enhanced biosynthesis.
abstract: Biosynthesis enables renewable production of manifold compounds, yet often biosynthetic performance must be improved for it to be economically feasible. Nongenetic, cell-to-cell variations in protein and metabolite concentrations are naturally inherent, suggesting the existence of both high- and low-performance variants in all cultures. Although having an intrinsic source of low performers might cause suboptimal ensemble biosynthesis, the existence of high performers suggests an avenue for performance enhancement. Here we develop in vivo population quality control (PopQC) to continuously select for high-performing, nongenetic variants. We apply PopQC to two biosynthetic pathways using two alternative design principles and demonstrate threefold enhanced production of both free fatty acid (FFA) and tyrosine. We confirm that PopQC improves ensemble biosynthesis by selecting for nongenetic high performers. Additionally, we use PopQC in fed-batch FFA production and achieve 21.5 g l(-1) titer and 0.5 g l(-1) h(-1) productivity. Given the ubiquity of nongenetic variation, PopQC should be applicable to a variety of metabolic pathways for enhanced biosynthesis.
authors.affiliation: Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
authors.forename: Yi
authors.initials: Y
authors.lastname: Xiao
authors.affiliation: Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
authors.forename: Christopher H
authors.initials: CH
authors.lastname: Bowen
authors.affiliation: Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
authors.forename: Di
authors.initials: D
authors.lastname: Liu
authors.affiliation: Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.|Division of Biological and Biomedical Sciences, Washington University in St. Louis, St. Louis, Missouri, USA.|Institute of Materials Science and Engineering, Washington University in St. Louis, St. Louis, Missouri, USA.
authors.forename: Fuzhong
authors.initials: F
authors.lastname: Zhang
mesh_terms: D003001:Cloning, Molecular; D004926:Escherichia coli / Q000166:cytology* / Q000502:physiology*; D005230:Fatty Acids, Nonesterified / Q000096:biosynthesis*; D015964:Gene Expression Regulation, Bacterial; D060847:Metabolic Engineering; D053858:Metabolic Networks and Pathways; D014443:Tyrosine / Q000096:biosynthesis*
chemical_list: D005230:Fatty Acids, Nonesterified; D014443:Tyrosine