title: Evolutionary tradeoffs in cellular composition across diverse bacteria.
abstract: One of the most important classic and contemporary interests in biology is the connection between cellular composition and physiological function. Decades of research have allowed us to understand the detailed relationship between various cellular components and processes for individual species, and have uncovered common functionality across diverse species. However, there still remains the need for frameworks that can mechanistically predict the tradeoffs between cellular functions and elucidate and interpret average trends across species. Here we provide a comprehensive analysis of how cellular composition changes across the diversity of bacteria as connected with physiological function and metabolism, spanning five orders of magnitude in body size. We present an analysis of the trends with cell volume that covers shifts in genomic, protein, cellular envelope, RNA and ribosomal content. We show that trends in protein content are more complex than a simple proportionality with the overall genome size, and that the number of ribosomes is simply explained by cross-species shifts in biosynthesis requirements. Furthermore, we show that the largest and smallest bacteria are limited by physical space requirements. At the lower end of size, cell volume is dominated by DNA and protein content-the requirement for which predicts a lower limit on cell size that is in good agreement with the smallest observed bacteria. At the upper end of bacterial size, we have identified a point at which the number of ribosomes required for biosynthesis exceeds available cell volume. Between these limits we are able to discuss systematic and dramatic shifts in cellular composition. Much of our analysis is connected with the basic energetics of cells where we show that the scaling of metabolic rate is surprisingly superlinear with all cellular components.
authors.affiliation: The Santa Fe Institute, Santa Fe, NM, USA.|Control and Dynamical Systems, California Institute of Technology, Pasadena, CA, USA.|NASA Ames Research Center, Moffett Field, CA, USA.
authors.forename: Christopher P
authors.initials: CP
authors.lastname: Kempes
authors.affiliation: Control and Dynamical Systems, California Institute of Technology, Pasadena, CA, USA.
authors.forename: Lawrence
authors.initials: L
authors.lastname: Wang
authors.affiliation: Department of Earth Sciences, University of Southern California, Los Angeles, CA, USA.|Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
authors.forename: Jan P
authors.initials: JP
authors.lastname: Amend
authors.affiliation: Control and Dynamical Systems, California Institute of Technology, Pasadena, CA, USA.
authors.forename: John
authors.initials: J
authors.lastname: Doyle
authors.affiliation: NASA Ames Research Center, Moffett Field, CA, USA.
authors.forename: Tori
authors.initials: T
authors.lastname: Hoehler
mesh_terms: D001419:Bacteria / Q000166:cytology / Q000235:genetics* / Q000378:metabolism; D005075:Biological Evolution; D016680:Genome, Bacterial / Q000235:genetics*; D023281:Genomics; D012329:RNA, Bacterial / Q000235:genetics; D012270:Ribosomes / Q000235:genetics
chemical_list: D012329:RNA, Bacterial