title: Key Considerations and Methods in the Study of Gene-Environment Interactions.
abstract: With increased involvement of genetic data in most epidemiological investigations, gene-environment (G × E) interactions now stand as a topic, which must be meticulously assessed and thoroughly understood. The level, mode, and outcomes of interactions between environmental factors and genetic traits have the capacity to modulate disease risk. These must, therefore, be carefully evaluated as they have the potential to offer novel insights on the "missing heritability problem", reaching beyond our current limitations. First, we review a definition of G × E interactions. We then explore how concepts such as the early manifestation of the genetic components of a disease, the heterogeneity of complex traits, the clear definition of epidemiological strata, and the effect of varying physiological conditions can affect our capacity to detect (or miss) G × E interactions. Lastly, we discuss the shortfalls of regression models to study G × E interactions and how other methods such as the ReliefF algorithm, pattern recognition methods, or the LASSO (Least Absolute Shrinkage and Selection Operator) method can enable us to more adequately model G × E interactions. Overall, we present the elements to consider and a path to follow when studying genetic determinants of disease in order to uncover potential G × E interactions.
authors.affiliation: CHUM Research Center, Centre hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
authors.forename: Paul H G
authors.initials: PH
authors.lastname: Simon
authors.affiliation: CHUM Research Center, Centre hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
authors.forename: Marie-Pierre
authors.initials: MP
authors.lastname: Sylvestre
authors.affiliation: CHUM Research Center, Centre hospitalier de l'Université de Montréal, Montréal, Québec, Canada.
authors.forename: Johanne
authors.initials: J
authors.lastname: Tremblay
authors.affiliation: CHUM Research Center, Centre hospitalier de l'Université de Montréal, Montréal, Québec, Canada. pavel.hamet@umontreal.ca.
authors.forename: Pavel
authors.initials: P
authors.lastname: Hamet
mesh_terms: D004194:Disease / Q000235:genetics; D059647:Gene-Environment Interaction; D018740:Genetic Heterogeneity; D055106:Genome-Wide Association Study / Q000379:methods*; D015438:Health Behavior; D006801:Humans; D000071184:Pharmacogenomic Variants
keywords: blood pressure; environment; gene; heritability; hypertension; interaction; medication.