title: Quantitative proteomic analysis of post-flooding recovery in soybean root exposed to aluminum oxide nanoparticles.
abstract: Aluminum oxide nanoparticles (Al2O3 NPs) are used in various commercial and agricultural products. Soybean exhibits severe reduction in growth under flooding condition. To examine the effects of Al2O3 NPs on the recovery of soybean from flooding, proteomic analysis was performed. Survival percentage and weight/length of root including hypocotyl were improved after 2 and 4days of flooding with 50ppm Al2O3 NPs leading to recovery as compared to flooding. A total of 211 common proteins were changed in abundance during the recovery period after treatment without or with Al2O3 NPs. These proteins were related to protein synthesis, stress, cell wall, and signaling. Among the identified stress-related proteins, S-adenosyl-l-methionine dependent methyltransferases were recovered from flooding with Al2O3 NPs. Hierarchical clustering divided the identified proteins into three clusters. Cluster II exhibited the greatest change in proteins related to protein synthesis, transport, and development during the recovery from flooding with Al2O3 NPs. However, activity of enolase remained unchanged during flooding leading to subsequent recovery with Al2O3 NPs. These results suggest that S-adenosyl-l-methionine dependent methyltransferases and enolase might be involved in mediating recovery responses by Al2O3 NPs.
  
  
  
  This study highlighted the role of Al2O3 NPs in recovery of soybean seedlings from flooding stress using gel-free proteomic technique. The key findings of this study are as follows: (i) survival percentage was enhanced at 50ppm Al2O3 NPs during the recovery stage; (ii) seedling weight and weight/length of root including hypocotyl improved at 50ppm Al2O3 NPs during the period of recovery; (iii) protein synthesis and stress related proteins were increased on recovery after flooding without or with Al2O3 NPs; (iv) the abundance of S-adenosyl-l-methionine dependent methyltransferases recovered from flooding with Al2O3 NPs; (v) glycolysis related proteins amplified under flooding with Al2O3 NPs; (vi) enolase enzyme remained unchanged during flooding leading to subsequent recovery from flooding with Al2O3 NPs. Collectively, these results suggest that S-adenosyl-l-methionine dependent methyltransferases and enolase are involved in response to flooding with Al2O3 NPs and might be helpful in recovery from flooding stress.
authors.affiliation: Department of Botany, PMAS-Arid Agriculture University, Rawalpindi 46300, Pakistan; National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
authors.forename: Farhat
authors.initials: F
authors.lastname: Yasmeen
authors.affiliation: Department of Botany, PMAS-Arid Agriculture University, Rawalpindi 46300, Pakistan.
authors.forename: Naveed Iqbal
authors.initials: NI
authors.lastname: Raja
authors.affiliation: National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
authors.forename: Ghazala
authors.initials: G
authors.lastname: Mustafa
authors.affiliation: Maebashi Institute of Technology, Maebashi 371-0816, Japan.
authors.forename: Katsumi
authors.initials: K
authors.lastname: Sakata
authors.affiliation: National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan. Electronic address: skomatsu@affrc.go.jp.
authors.forename: Setsuko
authors.initials: S
authors.lastname: Komatsu
mesh_terms: D000222:Adaptation, Physiological / Q000187:drug effects*; D000537:Aluminum Oxide / Q000494:pharmacology*; D055868:Floods; D053758:Nanoparticles / Q000737:chemistry; D018517:Plant Roots / Q000737:chemistry* / Q000187:drug effects; D040901:Proteomics / Q000379:methods; D020127:Recovery of Function / Q000187:drug effects; D013025:Glycine max / Q000187:drug effects / Q000502:physiology*
chemical_list: D000537:Aluminum Oxide
keywords: Aluminum oxide nanoparticles; Flooding stress; Proteomics; Recovery; Soybean