title: Proteomic Characterization of Reversible Thiol Oxidations in Proteomes and Proteins.
abstract: Reactive oxygen species are produced during normal metabolism in cells, and their excesses have been implicated in protein damage and toxicity, as well as in the activation of signaling events. In particular, hydrogen peroxide participates in the regulation of different physiological processes as well as in the induction of antioxidant cascades, and often the redox molecular events triggering these pathways are based on reversible cysteine (Cys) oxidation. Recent Advances: Increases in peroxides can cause the accumulation of reversible Cys oxidations in proteomes, which may be either protecting thiols from irreversible oxidations or may just be reporters of future toxicity. It is also becoming clear, however, that only a few proteins, such as the bacterial OxyR or peroxidases, can suffer direct oxidation of their Cys residues by hydrogen peroxide and, therefore, may be the only true sensors initiating signaling events.
  
  
  
  We will in this study describe some of the methodologies used to characterize at the proteome level reversible thiol oxidations, specifically those combining gel-free approaches with mass spectrometry. In the second part of this review, we will summarize some of the electrophoretic and proteomic techniques used to monitor Cys oxidation at the protein level, needed to confirm that a protein contains redox Cys involved in signaling relays, using as examples some of the best characterized redox sensors such as bacterial OxyR or yeast Tpx1/Pap1.
  
  
  
  While Cys oxidations are often detected in proteomes and in specific proteins, major efforts have to be made to establish that they are physiologically relevant. Antioxid. Redox Signal. 26, 329-344.
authors.affiliation: Oxidative Stress and Cell Cycle Group, Universitat Pompeu Fabra , Barcelona, Spain .
authors.forename: Susanna
authors.initials: S
authors.lastname: Boronat
authors.affiliation: Oxidative Stress and Cell Cycle Group, Universitat Pompeu Fabra , Barcelona, Spain .
authors.forename: Alba
authors.initials: A
authors.lastname: Domènech
authors.affiliation: Oxidative Stress and Cell Cycle Group, Universitat Pompeu Fabra , Barcelona, Spain .
authors.forename: Elena
authors.initials: E
authors.lastname: Hidalgo
mesh_terms: D000818:Animals; D003545:Cysteine / Q000378:metabolism; D006801:Humans; D006861:Hydrogen Peroxide / Q000378:metabolism; D013058:Mass Spectrometry; D010084:Oxidation-Reduction; D018384:Oxidative Stress / Q000187:drug effects; D000073718:Pancreatitis-Associated Proteins; D011499:Protein Processing, Post-Translational; D020543:Proteome / Q000378:metabolism*; D040901:Proteomics / Q000379:methods; D017382:Reactive Oxygen Species / Q000378:metabolism; D015398:Signal Transduction; D013438:Sulfhydryl Compounds / Q000378:metabolism*
chemical_list: D000073718:Pancreatitis-Associated Proteins; D020543:Proteome; C000612141:REG3A protein, human; D017382:Reactive Oxygen Species; D013438:Sulfhydryl Compounds; D006861:Hydrogen Peroxide; D003545:Cysteine
keywords: Cys oxidation; H2O2; ICAT; redox proteomics; thiol switch