title: De novo transcriptome sequencing and gene expression analysis reveal potential mechanisms of seed abortion in dove tree (Davidia involucrata Baill.).
abstract: BACKGROUND
  Dove tree (Davidia involucrata Baill.) is a rare and endangered species. Natural reproduction of dove tree is extremely difficult due to its low fecundity. Serious seed abortion is one of the key factors restraining its sexual reproduction. Understanding the inducements of seed abortion is critical for addressing the issue of offspring production and the survivability of such an endangered species. However, studies on the molecular mechanism of seed abortion in woody plants are lacking, and the dearth of genomic resources for dove tree restricts further research.
  
  
  RESULTS
  In this study, using the Illumina platform, we performed de novo transcriptome sequencing of the fruit and seed in dove tree. A total of 149,099 transcripts were isolated and then assembled into 72,885 unigenes. Subsequently, differentially expressed genes (DEGs) between normal and abortive seeds were screened. Genes involved in response to stress, hormone signal transduction, programmed cell death, lignin biosynthesis, and secondary cell wall biogenesis showed significant different expression levels between normal and abortive seeds.
  
  
  CONCLUSIONS
  Combined results indicated that the abortive seeds were under the adversity stress, which should be controlled by the maternal plant. Maternally controlled development of integument is assumed to be a critical process for abortion regulation. MYB and WRKY transcription factors, receptor kinase and laccase are considered to be important regulators in seed abortion. Moreover, mass sequence data facilitated further molecular research on this unique species.
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China.
authors.forename: Meng
authors.initials: M
authors.lastname: Li
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China.
authors.forename: Xujie
authors.initials: X
authors.lastname: Dong
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China.
authors.forename: Jiqing
authors.initials: J
authors.lastname: Peng
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China.
authors.forename: Wen
authors.initials: W
authors.lastname: Xu
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China.
authors.forename: Rui
authors.initials: R
authors.lastname: Ren
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China.|Department of Biology, Eastern New Mexico University, Portales, NM, 88130, USA.
authors.forename: Jane
authors.initials: J
authors.lastname: Liu
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China. csfucao@163.com.
authors.forename: Fuxiang
authors.initials: F
authors.lastname: Cao
authors.affiliation: Key Laboratory of Cultivation and Protection for Non-wood Forest Trees, Ministry of Education, College of Life Science and Technology; Central South University of Forestry and Technology, Changsha, People's Republic of China. 13319516033@163.com.|Department of Biology, Eastern New Mexico University, Portales, NM, 88130, USA. 13319516033@163.com.
authors.forename: Zhiming
authors.initials: Z
authors.lastname: Liu
mesh_terms: D017209:Apoptosis / Q000235:genetics; D049109:Cell Proliferation / Q000235:genetics; D016000:Cluster Analysis; D004261:DNA Replication / Q000187:drug effects; D056727:Endangered Species; D005227:Fatty Acids / Q000378:metabolism; D005298:Fertility / Q000235:genetics; D005638:Fruit / Q000235:genetics; D020869:Gene Expression Profiling / Q000379:methods*; D018506:Gene Expression Regulation, Plant; D063990:Gene Ontology; D030701:Nyssaceae / Q000166:cytology / Q000235:genetics* / Q000378:metabolism; D051479:Plant Infertility / Q000235:genetics; D020133:Reverse Transcriptase Polymerase Chain Reaction; D012639:Seeds / Q000166:cytology / Q000235:genetics* / Q000378:metabolism; D017423:Sequence Analysis, RNA / Q000379:methods; D013213:Starch / Q000378:metabolism; D013395:Sucrose / Q000378:metabolism; D059467:Transcriptome
chemical_list: D005227:Fatty Acids; D013395:Sucrose; D013213:Starch
keywords: Adversity stress; Dove tree (Davidia involucrata Baill.); Integument; Phytohormone; Seed abortion; Transcriptome