title: Genome mining of the sordarin biosynthetic gene cluster from Sordaria araneosa Cain ATCC 36386: characterization of cycloaraneosene synthase and GDP-6-deoxyaltrose transferase.
abstract: Sordarin is a glycoside antibiotic with a unique tetracyclic diterpene aglycone structure called sordaricin. To understand its intriguing biosynthetic pathway that may include a Diels-Alder-type [4+2]cycloaddition, genome mining of the gene cluster from the draft genome sequence of the producer strain, Sordaria araneosa Cain ATCC 36386, was carried out. A contiguous 67 kb gene cluster consisting of 20 open reading frames encoding a putative diterpene cyclase, a glycosyltransferase, a type I polyketide synthase, and six cytochrome P450 monooxygenases were identified. In vitro enzymatic analysis of the putative diterpene cyclase SdnA showed that it catalyzes the transformation of geranylgeranyl diphosphate to cycloaraneosene, a known biosynthetic intermediate of sordarin. Furthermore, a putative glycosyltransferase SdnJ was found to catalyze the glycosylation of sordaricin in the presence of GDP-6-deoxy-d-altrose to give 4'-O-demethylsordarin. These results suggest that the identified sdn gene cluster is responsible for the biosynthesis of sordarin. Based on the isolated potential biosynthetic intermediates and bioinformatics analysis, a plausible biosynthetic pathway for sordarin is proposed.
authors.affiliation: Department of Chemistry, Tokyo Institute of Technology, Tokyo, Japan.
authors.forename: Fumitaka
authors.initials: F
authors.lastname: Kudo
authors.affiliation: Department of Chemistry, Tokyo Institute of Technology, Tokyo, Japan.
authors.forename: Yasunori
authors.initials: Y
authors.lastname: Matsuura
authors.affiliation: Department of Chemistry, Tokyo Institute of Technology, Tokyo, Japan.
authors.forename: Takaaki
authors.initials: T
authors.lastname: Hayashi
authors.affiliation: Department of Chemistry and Materials Science, Tokyo Institute of Technology, Tokyo, Japan.
authors.forename: Masayuki
authors.initials: M
authors.lastname: Fukushima
authors.affiliation: Department of Chemistry and Materials Science, Tokyo Institute of Technology, Tokyo, Japan.
authors.forename: Tadashi
authors.initials: T
authors.lastname: Eguchi
mesh_terms: D000935:Antifungal Agents / Q000378:metabolism*; D005800:Genes, Fungal; D016681:Genome, Fungal; D023281:Genomics; D016695:Glycosyltransferases / Q000235:genetics / Q000378:metabolism*; D007192:Indenes / Q000378:metabolism*; D020037:Sordariales / Q000201:enzymology* / Q000235:genetics* / Q000378:metabolism
chemical_list: D000935:Antifungal Agents; D007192:Indenes; C003329:sordarin; D016695:Glycosyltransferases