title: Association of NOD1, CXCL16, STAT6 and TLR4 gene polymorphisms with Malaysian patients with Crohn's disease.
abstract: Crohn's disease (CD) is a prominent type of inflammatory bowel disease (IBD) that can affect any part of the gastrointestinal tract. CD is known to have higher prevalence in the Western countries, but the number of cases has been increasing in the past decades in Asia, including Malaysia. Therefore, there is a need to investigate the underlining causes of CD that may shed light on its prevention and treatment. In this study, genetic polymorphisms in NOD1 (rs2075820), CXCL16 (rs2277680), STAT6 (rs324015) and TLR4 (rs4986791) genes were examined in a total of 335 individuals (85 CD patients and 250 healthy controls) with PCR-RFLP approach. There was no significant association observed between NOD1 rs2075820 and STAT6 rs324015 with the onset of CD in the studied cohort. However, the G allele of CXCL16 rs2277680 was found to have a weak association with CD patients (P = 0.0482; OR = 1.4310). The TLR4 rs4986791 was also significantly associated to CD. Both the homozygous C genotype (P = 0.0029; OR = 0.3611) and C allele (P = 0.0069; OR = 0.4369) were observed to confer protection against CD. On the other hand, the heterozygous C/T genotype was a risk genotype (P = 0.0015; OR = 3.1392). Further ethnic-stratified analysis showed that the significant associations in CXCL16 rs2277680 and TLR4 rs4986791 were accounted by the Malay cohort. In conclusion, the present study reported two CD-predisposing loci in the Malay CD patients. However, these loci were not associated to the onset of CD in Chinese and Indian patients.
authors.affiliation: Department of Biomedical Science, Faculty of Medicine, Universiti Malaya , Kuala Lumpur , Malaysia.
authors.forename: Kek Heng
authors.initials: KH
authors.lastname: Chua
authors.affiliation: Division of Genetics and Molecular Biology, Institute of Biological Science, Faculty of Science, Universiti Malaya , Kuala Lumpur , Malaysia.
authors.forename: Jin Guan
authors.initials: JG
authors.lastname: Ng
authors.affiliation: Division of Genetics and Molecular Biology, Institute of Biological Science, Faculty of Science, Universiti Malaya , Kuala Lumpur , Malaysia.
authors.forename: Ching Ching
authors.initials: CC
authors.lastname: Ng
authors.affiliation: Division of Gastroenterology and Hepatology, Department of Medicine, Faculty of Medicine, Universiti Malaya , Kuala Lumpur , Malaysia.
authors.forename: Ida
authors.initials: I
authors.lastname: Hilmi
authors.affiliation: Division of Gastroenterology and Hepatology, Department of Medicine, Faculty of Medicine, Universiti Malaya , Kuala Lumpur , Malaysia.
authors.forename: Khean Lee
authors.initials: KL
authors.lastname: Goh
authors.affiliation: Department of Biomedical Science, Faculty of Medicine, Universiti Malaya , Kuala Lumpur , Malaysia.
authors.forename: Boon Pin
authors.initials: BP
authors.lastname: Kee
keywords: CXCL16; Crohn’s disease; NOD1; SNP; STAT6; TLR4