title: Synergistic enhancement of cellulase pairs linked by consensus ankyrin repeats: Determination of the roles of spacing, orientation, and enzyme identity.
abstract: Biomass deconstruction to small simple sugars is a potential approach to biofuels production; however, the highly recalcitrant nature of biomass limits the economic viability of this approach. Thus, research on efficient biomass degradation is necessary to achieve large-scale production of biofuels. Enhancement of cellulolytic activity by increasing synergism between cellulase enzymes holds promise in achieving high-yield biofuels production. Here we have inserted cellulase pairs from extremophiles into hyperstable α-helical consensus ankyrin repeat domain scaffolds. Such chimeric constructs allowed us to optimize arrays of enzyme pairs against a variety of cellulolytic substrates. We found that endocellulolytic domains CelA (CA) and Cel12A (C12A) act synergistically in the context of ankyrin repeats, with both three and four repeat spacing. The extent of synergy differs for different substrates. Also, having C12A N-terminal to CA provides greater synergy than the reverse construct, especially against filter paper. In contrast, we do not see synergy for these enzymes in tandem with CelK (CK) catalytic domain, a larger exocellulase, demonstrating the importance of enzyme identity in synergistic enhancement. Furthermore, we found endocellulases CelD and CA with three repeat spacing to act synergistically against filter paper. Importantly, connecting CA and C12A with a disordered linker of similar contour length shows no synergistic enhancement, indicating that synergism results from connecting these domains with folded ankyrin repeats. These results show that ankyrin arrays can be used to vary spacing and orientation between enzymes, helping to design and optimize artificial cellulosomes, providing a novel architecture for synergistic enhancement of enzymatic cellulose degradation. Proteins 2016; 84:1043-1054. © 2016 Wiley Periodicals, Inc.
authors.affiliation: T.C. Jenkins Department of Biophysics, Johns Hopkins University, 3400 N. Charles St, Baltimore, Maryland, 21218.|Department of Structural Biology, Max Plank Institute of Biophysics, Max-von-Laue-Str. 3, Frankfurt am Main, D-60438, Germany.
authors.forename: Eva S
authors.initials: ES
authors.lastname: Cunha
authors.affiliation: T.C. Jenkins Department of Biophysics, Johns Hopkins University, 3400 N. Charles St, Baltimore, Maryland, 21218.
authors.forename: Christine L
authors.initials: CL
authors.lastname: Hatem
authors.affiliation: T.C. Jenkins Department of Biophysics, Johns Hopkins University, 3400 N. Charles St, Baltimore, Maryland, 21218.
authors.forename: Doug
authors.initials: D
authors.lastname: Barrick
mesh_terms: D000595:Amino Acid Sequence; D017089:Ankyrin Repeat; D001426:Bacterial Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D056804:Biofuels; D018533:Biomass; D002480:Cellulase / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D002482:Cellulose / Q000737:chemistry* / Q000378:metabolism; D044603:Cellulosomes / Q000737:chemistry / Q000201:enzymology; D003001:Cloning, Molecular; D000068016:Eubacteriales / Q000737:chemistry* / Q000201:enzymology; D057075:Enzyme Assays; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism; D015870:Gene Expression; D008958:Models, Molecular; D017433:Protein Structure, Secondary; D011994:Recombinant Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D013329:Structure-Activity Relationship; D020124:Thermotoga maritima / Q000737:chemistry* / Q000201:enzymology
chemical_list: D001426:Bacterial Proteins; D056804:Biofuels; D011994:Recombinant Proteins; D002482:Cellulose; D002480:Cellulase
keywords: DNS; ankyrin; artificial cellulosome; biofuels; cellulase; scaffold