Solute-Solvent Energetics Based on Proximal Distribution Functions.
We consider the hydration structure and thermodynamic energetics of solutes in aqueous solution. On the basis of the dominant local correlation between the solvent and the chemical nature of the solute atoms, proximal distribution functions (pDF) can be used to quantitatively estimate the hydration pattern of the macromolecules. We extended this technique to study the solute-solvent energetics including the van der Waals terms representing excluded volume and tested the method with butane and propanol. Our results indicate that the pDF-reconstruction algorithm can reproduce van der Waals solute-solvent interaction energies to useful kilocalorie per mole accuracy. We subsequently computed polyalanine-water interaction energies for a variety of conformers, which also showed agreement with the simulated values.
Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch , 301 University Boulevard, Galveston, Texas 77555-0304, United States.
Shu-Ching
SC
Ou
Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch , 301 University Boulevard, Galveston, Texas 77555-0304, United States.
B Montgomery
BM
Pettitt
D000433:1-Propanol / Q000737:chemistry*; D000465:Algorithms; D002073:Butanes / Q000737:chemistry*; D008956:Models, Chemical; D010455:Peptides / Q000737:chemistry*; D012996:Solutions; D012997:Solvents / Q000737:chemistry*; D013816:Thermodynamics; D014867:Water / Q000737:chemistry*
D002073:Butanes; D010455:Peptides; D012996:Solutions; D012997:Solvents; D014867:Water; C019529:polyalanine; C046888:butane; D000433:1-Propanol