Evaluating the utility of mid-infrared spectral subspaces for predicting soil properties.
We propose four methods for finding local subspaces in large spectral libraries. The proposed four methods include (a) cosine angle spectral matching; (b) hit quality index spectral matching; (c) self-organizing maps and (d) archetypal analysis methods. Then evaluate prediction accuracies for global and subspaces calibration models. These methods were tested on a mid-infrared spectral library containing 1907 soil samples collected from 19 different countries under the Africa Soil Information Service project. Calibration models for pH, Mehlich-3 Ca, Mehlich-3 Al, total carbon and clay soil properties were developed for the whole library and for the subspace. Root mean square error of prediction was used to evaluate predictive performance of subspace and global models. The root mean square error of prediction was computed using a one-third-holdout validation set. Effect of pretreating spectra with different methods was tested for 1st and 2nd derivative Savitzky-Golay algorithm, multiplicative scatter correction, standard normal variate and standard normal variate followed by detrending methods. In summary, the results show that global models outperformed the subspace models. We, therefore, conclude that global models are more accurate than the local models except in few cases. For instance, sand and clay root mean square error values from local models from archetypal analysis method were 50% poorer than the global models except for subspace models obtained using multiplicative scatter corrected spectra with which were 12% better. However, the subspace approach provides novel methods for discovering data pattern that may exist in large spectral libraries.
World Agroforestry Centre (ICRAF), P.O. Box 30677-00100 GPO, Nairobi, Kenya; School of Mathematics, University of Nairobi, P.O Box 30196-00100 GPO, Nairobi, Kenya.
Andrew M
AM
Sila
World Agroforestry Centre (ICRAF), P.O. Box 30677-00100 GPO, Nairobi, Kenya.
Keith D
KD
Shepherd
School of Mathematics, University of Nairobi, P.O Box 30196-00100 GPO, Nairobi, Kenya.
Ganesh P
GP
Pokhariyal
Archetypes; Cosine; Hit quality index; Self-organizing maps; Spectroscopy; Subspace