First Comparative Analysis of the Community Structures and Carbon Metabolic Pathways of the Bacteria Associated with Alvinocaris longirostris in a Hydrothermal Vent of Okinawa Trough.
Alvinocaris longirostris is a species of shrimp existing in the hydrothermal fields of Okinawa Trough. To date the structure and function of the microbial community associated with A. longirostris are essentially unknown. In this study, by employment of the techniques of high through-put sequencing and clone library construction and analysis, we compared for the first time the community structures and metabolic profiles of microbes associated with the gill and gut of A. longirostris in a hydrothermal field of Okinawa Trough. Fourteen phyla were detected in the gill and gut communities, of which 11 phyla were shared by both tissues. Proteobacteria made up a substantial proportion in both tissues, while Firmicutes was abundant only in gut. Although gill and gut communities were similar in bacterial diversities, the bacterial community structures in these two tissues were significantly different. Further, we discovered for the first time the existence in the gill and gut communities of A. longirostris the genes (cbbM and aclB) encoding the key enzymes of Calvin-Benson-Bassham (CBB) cycle and the reductive tricarboxylic acid (rTCA) cycle, and that both cbbM and aclB were significantly more abundant in gill than in gut. Taken together, these results provide the first evidence that at least two carbon fixation pathways are present in both the gill and the gut communities of A. longirostris, and that the communities in different tissues likely differ in autotrophic productivity.
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.|Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.|University of Chinese Academy of Sciences, Beijing, China.
Qing-Lei
QL
Sun
Key Laboratory of Marine Geology and Environment, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Zhi-Gang
ZG
Zeng
Key Laboratory of Marine Geology and Environment, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.
Shuai
S
Chen
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.|Laboratory for Marine Biology and Biotechnology, Qingdao National Laboratory for Marine Science and Technology, Qingdao, China.
Li
L
Sun
D000255:Adenosine Triphosphate / Q000737:chemistry; D000818:Animals; D052818:Autotrophic Processes; D001419:Bacteria / Q000145:classification / Q000378:metabolism; D002244:Carbon / Q000378:metabolism*; D057486:Carbon Cycle; D002952:Citric Acid Cycle; D003001:Cloning, Molecular; D033364:Decapoda / Q000382:microbiology*; D015723:Gene Library; D005880:Gills / Q000382:microbiology*; D060086:Hydrothermal Vents; D007422:Intestines / Q000382:microbiology*; D007564:Japan; D053858:Metabolic Networks and Pathways; D010802:Phylogeny; D025341:Principal Component Analysis; D020560:Proteobacteria / Q000145:classification / Q000378:metabolism; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D013696:Temperature
D012336:RNA, Ribosomal, 16S; D002244:Carbon; D000255:Adenosine Triphosphate