Molecular Characterization and Global Expression Analysis of Lectin Receptor Kinases in Bread Wheat (Triticum aestivum).
Lectin receptor kinases (LRKs) play a critical role in plants during development and stress conditions, but a comprehensive analysis at genome level is still not carried out in Triticum aestivum. Herein, we performed the genome wide identification, characterization and expression analysis of these genes in T. aestivum (TaLRK). In-total 263 TaLRK genes were identified, which were further classified into three groups based on the nature of lectin domain. We identified, two TaLRKs consisted of calcium-dependent lectin (C-LRK), while 84 legume-lectin (L-LRK) and 177 bulb-lectin (B-LRK) domains. The L-LRK and B-LRK genes were distributed throughout the genome of T. aestivum. Most of the TaLRKs were clustered as homologs, which were distributed either in proximity on same chromosome or on homoeologous chromosomes of A, B and D sub-genomes. A total of 9 and 58 duplication events were also predicted in L-LRK and B-LRK, respectively. Phylogenetic analysis indicated conserved evolutionary relationship of homologous and orthologous genes from multiple plant species. Gene ontology analysis indicated TaLRKs role in binding, signaling and receptor activities. Most of the TaLRKs consisted of a trans-membrane domain and predicted to be localized in the plasma-membrane. A diverse expression pattern of TaLRK genes was found in various developmental stages and stress conditions. Some TaLRKs were found to be highly affected during a particular stress, which indicated a specialized role of each LRK gene in a specific stress condition. These results described various characteristic feature and expression pattern of TaLRK genes, which will pave the way for functional characterization in wheat.
Deparment of Botany, Panjab University, Chandigarh, India, 160014.|Deparment of Biotechnology, Panjab University, Chandigarh, India, 160014.
Shumayla
National Agri-Food Biotechnology Institute, (Department of Biotechnology, Government of India), C-127, Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab, India, 160071l.
Shailesh
S
Sharma
National Agri-Food Biotechnology Institute, (Department of Biotechnology, Government of India), C-127, Industrial Area, S.A.S. Nagar, Phase 8, Mohali, Punjab, India, 160071l.
Ajay K
AK
Pandey
Deparment of Biotechnology, Panjab University, Chandigarh, India, 160014.
Kashmir
K
Singh
Deparment of Botany, Panjab University, Chandigarh, India, 160014.
Santosh Kumar
SK
Upadhyay
D015971:Gene Expression Regulation, Enzymologic; D010770:Phosphotransferases / Q000378:metabolism*; D010802:Phylogeny; D011975:Receptors, Mitogen / Q000235:genetics / Q000378:metabolism*; D014908:Triticum / Q000201:enzymology*
D011975:Receptors, Mitogen; D010770:Phosphotransferases