title: CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets.
abstract: Promoter capture Hi-C (PCHi-C) allows the genome-wide interrogation of physical interactions between distal DNA regulatory elements and gene promoters in multiple tissue contexts. Visual integration of the resultant chromosome interaction maps with other sources of genomic annotations can provide insight into underlying regulatory mechanisms. We have developed Capture HiC Plotter (CHiCP), a web-based tool that allows interactive exploration of PCHi-C interaction maps and integration with both public and user-defined genomic datasets.
  
  
  
  CHiCP is freely accessible from www.chicp.org and supports most major HTML5 compliant web browsers. Full source code and installation instructions are available from http://github.com/D-I-L/django-chicp
  
  
  
  ob219@cam.ac.uk.
authors.affiliation: JDRF/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK.
authors.forename: E C
authors.initials: EC
authors.lastname: Schofield
authors.affiliation: JDRF/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK.
authors.forename: T
authors.initials: T
authors.lastname: Carver
authors.affiliation: JDRF/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK.
authors.forename: P
authors.initials: P
authors.lastname: Achuthan
authors.affiliation: Nuclear Dynamics Programme, The Babraham Institute, Cambridge CB22 3AT, UK.
authors.forename: P
authors.initials: P
authors.lastname: Freire-Pritchett
authors.affiliation: Nuclear Dynamics Programme, The Babraham Institute, Cambridge CB22 3AT, UK.
authors.forename: M
authors.initials: M
authors.lastname: Spivakov
authors.affiliation: JDRF/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK.
authors.forename: J A
authors.initials: JA
authors.lastname: Todd
authors.affiliation: JDRF/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK.
authors.forename: O S
authors.initials: OS
authors.lastname: Burren
mesh_terms: D002875:Chromosomes; D003196:Computer Graphics; D016678:Genome; D023281:Genomics; D020407:Internet; D011401:Promoter Regions, Genetic; D050436:Regulatory Elements, Transcriptional; D012984:Software