title: Distribution of glucan-branching enzymes among prokaryotes.
abstract: Glucan-branching enzyme plays an essential role in the formation of branched polysaccharides, glycogen, and amylopectin. Only one type of branching enzyme, belonging to glycoside hydrolase family 13 (GH13), is found in eukaryotes, while two types of branching enzymes (GH13 and GH57) occur in prokaryotes (Bacteria and Archaea). Both of these types are the members of protein families containing the diverse specificities of amylolytic glycoside hydrolases. Although similarities are found in the catalytic mechanism between the two types of branching enzyme, they are highly distinct from each other in terms of amino acid sequence and tertiary structure. Branching enzymes are found in 29 out of 30 bacterial phyla and 1 out of 5 archaeal phyla, often along with glycogen synthase, suggesting the existence of α-glucan production and storage in a wide range of prokaryotes. Enormous variability is observed as to which type and how many copies of branching enzyme are present depending on the phylum and, in some cases, even among species of the same genus. Such a variation may have occurred through lateral transfer, duplication, and/or differential loss of genes coding for branching enzyme during the evolution of prokaryotes.
authors.affiliation: Department of Biological Production, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjyo-Nakano, Akita, 010-0195, Japan. esuzuki@akita-pu.ac.jp.
authors.forename: Eiji
authors.initials: E
authors.lastname: Suzuki
authors.affiliation: Department of Biological Production, Akita Prefectural University, 241-438, Kaidobata-Nishi, Shimoshinjyo-Nakano, Akita, 010-0195, Japan.
authors.forename: Ryuichiro
authors.initials: R
authors.lastname: Suzuki
mesh_terms: D055162:Biocatalysis; D005936:Glucans / Q000096:biosynthesis / Q000378:metabolism*; D006026:Glycoside Hydrolases / Q000737:chemistry / Q000378:metabolism*; D010802:Phylogeny; D011387:Prokaryotic Cells / Q000201:enzymology*; D013379:Substrate Specificity
chemical_list: D005936:Glucans; D006026:Glycoside Hydrolases
keywords: Alpha-glucan; Archaea; Bacteria; Branching enzyme; Carbohydrate-active enzymes; Glycoside hydrolase; Glycosyltransferase