title: Possible role of interference, protein noise, and sink effects in nonphotochemical quenching in photosynthetic complexes.
abstract: We analyze theoretically a simple and consistent quantum mechanical model that reveals the possible role of quantum interference, protein noise, and sink effects in the nonphotochemical quenching (NPQ) in light-harvesting complexes (LHCs). The model consists of a network of five interconnected sites (excitonic states of light-sensitive molecules) responsible for the NPQ mechanism. The model also includes the "damaging" and the dissipative channels. The damaging channel is responsible for production of singlet oxygen and other destructive outcomes. In our model, both damaging and "dissipative" charge transfer channels are described by discrete electron energy levels attached to their sinks, that mimic the continuum part of electron energy spectrum. All five excitonic sites interact with the protein environment that is modeled using a stochastic process. Our approach allowed us to derive the exact and closed system of linear ordinary differential equations for the reduced density matrix and its first momentums. These equations are solved numerically including for strong interactions between the light-sensitive molecules and protein environment. As an example, we apply our model to demonstrate possible contributions of quantum interference, protein noise, and sink effects in the NPQ mechanism in the CP29 minor LHC. The numerical simulations show that using proper combination of quantum interference effects, properties of noise, and sinks, one can significantly suppress the damaging channel. Our findings demonstrate the possible role of interference, protein noise, and sink effects for modeling, engineering, and optimizing the performance of the NPQ processes in both natural and artificial light-harvesting complexes.
authors.affiliation: Los Alamos National Laboratory and the New Mexican Consortium, Los Alamos, NM, 87544, USA.
authors.forename: Gennady P
authors.initials: GP
authors.lastname: Berman
authors.affiliation: Departamento de Física, CUCEI, Universidad de Guadalajara, Av. Revolución 1500, Guadalajara, CP 44420, Jalisco, Mexico. nesterov@cencar.udg.mx.
authors.forename: Alexander I
authors.identifier: 0000-0002-4801-4570
authors.initials: AI
authors.lastname: Nesterov
authors.affiliation: Department of Particle Physics and Astrophysics, Weizmann Institute, 76100, Rehovot, Israel.
authors.forename: Shmuel
authors.initials: S
authors.lastname: Gurvitz
authors.affiliation: Los Alamos National Laboratory and the New Mexican Consortium, Los Alamos, NM, 87544, USA.
authors.forename: Richard T
authors.initials: RT
authors.lastname: Sayre
mesh_terms: D003198:Computer Simulation; D004735:Energy Transfer; D008027:Light; D008954:Models, Biological; D045322:Photosynthetic Reaction Center Complex Proteins / Q000378:metabolism*; D013269:Stochastic Processes
chemical_list: D045322:Photosynthetic Reaction Center Complex Proteins
keywords: Electron transfer; Noise; Non-Hermitian Hamiltonian; Photosynthetic complexes; Sink