title: cDNA Microarray Analysis Revealing Candidate Biomineralization Genes of the Pearl Oyster, Pinctada fucata martensii.
abstract: Biomineralization is a common biological phenomenon resulting in strong tissue, such as bone, tooth, and shell. Pinctada fucata martensii is an ideal animal for the study of biomineralization. Here, microarray technique was used to identify biomineralization gene in mantle edge (ME), mantle center (MC), and both ME and MC (ME-MC) for this pearl oyster. Results revealed that 804, 306, and 1127 contigs expressed at least three times higher in ME, MC, and ME-MC as those in other tissues. Blast against non-redundant database showed that 130 contigs (16.17 %), 53 contigs (17.32 %), and 248 contigs (22.01 %) hit reference genes (E ≤ -10), among which 91 contigs, 48 contigs, and 168 contigs could be assigned to 32, 26, and 63 biomineralization genes in tissue of ME, MC, and ME-MC at a threshold of 3 times upregulated expression level. The ratios of biomineralization contigs to homologous contigs were similar at 3 times, 10 times, and 100 times of upregulated expression level in either ME, MC, or ME-MC. Moreover, the ratio of biomineralization contigs was highest in MC. Although mRNA distribution characters were similar to those in other studies for eight biomineralization genes of PFMG3, Pif, nacrein, MSI7, mantle gene 6, Pfty1, prismin, and the shematrin, most biomineralization genes presented different expression profiles from existing reports. These results provided massive fundamental information for further study of biomineralization gene function, and it may be helpful for revealing gene nets of biomineralization and the molecular mechanisms underlining formation of shell and pearl for the oyster.
authors.affiliation: Key Laboratory of Tropic Biological Resources, Ministry of Education, Hainan Key Laboratory of Tropical Hydrobiological Technology, The Ocean College, Hainan University, Haikou, 570228, China.
authors.forename: Yaohua
authors.initials: Y
authors.lastname: Shi
authors.affiliation: Key Laboratory of Tropic Biological Resources, Ministry of Education, Hainan Key Laboratory of Tropical Hydrobiological Technology, The Ocean College, Hainan University, Haikou, 570228, China.
authors.forename: Xing
authors.initials: X
authors.lastname: Zheng
authors.affiliation: Key Laboratory of Tropic Biological Resources, Ministry of Education, Hainan Key Laboratory of Tropical Hydrobiological Technology, The Ocean College, Hainan University, Haikou, 570228, China.
authors.forename: Xin
authors.initials: X
authors.lastname: Zhan
authors.affiliation: Key Laboratory of Tropic Biological Resources, Ministry of Education, Hainan Key Laboratory of Tropical Hydrobiological Technology, The Ocean College, Hainan University, Haikou, 570228, China. aimwang@163.com.
authors.forename: Aimin
authors.initials: A
authors.lastname: Wang
authors.affiliation: Key Laboratory of Tropic Biological Resources, Ministry of Education, Hainan Key Laboratory of Tropical Hydrobiological Technology, The Ocean College, Hainan University, Haikou, 570228, China. hnugu@163.com.
authors.forename: Zhifeng
authors.initials: Z
authors.lastname: Gu
mesh_terms: D060105:Animal Shells / Q000254:growth & development / Q000378:metabolism*; D000818:Animals; D002113:Calcification, Physiologic / Q000235:genetics*; D002256:Carbonic Anhydrases / Q000235:genetics* / Q000378:metabolism; D020451:Contig Mapping; D030541:Databases, Genetic; D020869:Gene Expression Profiling; D018507:Gene Expression Regulation, Developmental; D063990:Gene Ontology; D058977:Molecular Sequence Annotation; D060734:Nacre / Q000235:genetics* / Q000378:metabolism; D020411:Oligonucleotide Array Sequence Analysis; D009928:Organ Specificity; D049911:Pinctada / Q000235:genetics* / Q000254:growth & development; D012333:RNA, Messenger / Q000235:genetics* / Q000378:metabolism
chemical_list: D060734:Nacre; D012333:RNA, Messenger; C101387:nacrein; D002256:Carbonic Anhydrases
keywords: Biomineralization gene; Mantle; Microarray; Pearl oyster; Pinctada fucata martensii