title: The Egyptian Red Sea coastal microbiome: A study revealing differential microbial responses to diverse anthropogenic pollutants.
abstract: The Red Sea is considered one of the youngest oceanic systems, with unique physical, geochemical and biological characteristics. Tourism, industrialization, extensive fishing, oil processing and shipping are extensive sources of pollution in the Red Sea. We analyzed the geochemical characteristics and microbial community of sediments along the Egyptian coast of the Red Sea. Our sites mainly included 1) four ports used for shipping aluminum, ilmenite and phosphate; 2) a site previously reported to have suffered extensive oil spills; and 3) a site impacted by tourism. Two major datasets for the sediment of ten Red Sea coastal sites were generated; i) a chemical dataset included measurements of carbon, hydrogen, nitrogen and sulfur, metals and selected semi-volatile oil; and ii) a 16S rRNA Pyrotags bacterial metagenomic dataset. Based on the taxonomic assignments of the 16S rRNA Pyrotags to major bacterial groups, we report 30 taxa constituting an Egyptian Red Sea Coastal Microbiome. Bacteria that degrade hydrocarbons were predominant in the majority of the sites, particularly in two ports where they reached up to 76% of the total identified genera. In contrast, sulfate-reducing and sulfate-oxidizing bacteria dominated two lakes at the expense of other hydrocarbon metabolizers. Despite the reported "Egyptian Red Sea Coastal Microbiome," sites with similar anthropogenic pollutants showed unique microbial community abundances. This suggests that the abundance of a specific bacterial community is an evolutionary mechanism induced in response to selected anthropogenic pollutants.
authors.affiliation: Biology Department, Biotechnology Graduate Program and YJ-Science and Technology Research Center, American University in Cairo, New Cairo Campus, AUC Avenue, PO Box 74, New Cairo 11835, Egypt.
authors.forename: Ghada A
authors.initials: GA
authors.lastname: Mustafa
authors.affiliation: Tourism Development Authority, Ministry of Tourism, Cairo, Egypt.
authors.forename: Amr
authors.initials: A
authors.lastname: Abd-Elgawad
authors.affiliation: Biology Department, Biotechnology Graduate Program and YJ-Science and Technology Research Center, American University in Cairo, New Cairo Campus, AUC Avenue, PO Box 74, New Cairo 11835, Egypt.
authors.forename: Amged
authors.initials: A
authors.lastname: Ouf
authors.affiliation: Biology Department, Biotechnology Graduate Program and YJ-Science and Technology Research Center, American University in Cairo, New Cairo Campus, AUC Avenue, PO Box 74, New Cairo 11835, Egypt.
authors.forename: Rania
authors.initials: R
authors.lastname: Siam
mesh_terms: D001419:Bacteria / Q000187:drug effects / Q000235:genetics / Q000254:growth & development; D004534:Egypt; D004777:Environment; D019156:Indian Ocean; D059013:Microbial Consortia / Q000187:drug effects / Q000235:genetics; D064307:Microbiota / Q000187:drug effects* / Q000235:genetics; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017423:Sequence Analysis, RNA; D014874:Water Pollutants, Chemical / Q000633:toxicity*
chemical_list: D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S; D014874:Water Pollutants, Chemical
keywords: 16S rRNA; Egypt; Geochemistry; Hydrocarbon degrading bacteria; Pollution; Red Sea