title: Rapid Verification of Terminators Using the pGR-Blue Plasmid and Golden Gate Assembly.
abstract: The goal of this protocol is to allow for the rapid verification of bioinformatically identified terminators. Further, the plasmid (pGR-Blue) is designed specifically for this protocol and allows for the quantification of terminator efficiency. As a proof of concept, six terminators were bioinformatically identified in the mycobacteriophage Bernal13. Once identified, terminators were then made as oligonucleotides with the appropriate sticky ends and annealed together. Using Golden Gate Assembly (GGA), terminators were then cloned into pGR-Blue. Under visible light, false positive colonies appear blue and positively transformed colonies are white/yellow. After induction of an arabinose inducible promoter (pBad) with arabinose, colony strength can be determined by measuring the ratio of green fluorescent protein (GFP) produced to red fluorescent protein (RFP) produced. With pGR-Blue, the protocol can be completed in as little as three days and is ideal in an educational setting. Additionally, results show that this protocol is useful as a means for understanding in silico predictions of terminator efficiency related to the regulation of transcription.
authors.affiliation: Department of Biology, Ouachita Baptist University.
authors.forename: Jace C
authors.initials: JC
authors.lastname: Bradshaw
authors.affiliation: Department of Biology, Ouachita Baptist University.
authors.forename: Allea Belle
authors.initials: AB
authors.lastname: Gongola
authors.affiliation: Department of Biology, Ouachita Baptist University; reynan@obu.edu.
authors.forename: Nathan S
authors.initials: NS
authors.lastname: Reyna
mesh_terms: D019295:Computational Biology / Q000379:methods; D004926:Escherichia coli / Q000235:genetics; D005818:Genetic Engineering / Q000379:methods*; D049452:Green Fluorescent Proteins / Q000235:genetics; D008164:Luminescent Proteins / Q000235:genetics; D010957:Plasmids / Q000235:genetics*; D011401:Promoter Regions, Genetic; D013728:Terminator Regions, Genetic; D000097573:Red Fluorescent Protein
chemical_list: D049452:Green Fluorescent Proteins; D008164:Luminescent Proteins; D000097573:Red Fluorescent Protein