title: Optogenetic Functional MRI.
abstract: The investigation of the functional connectivity of precise neural circuits across the entire intact brain can be achieved through optogenetic functional magnetic resonance imaging (ofMRI), which is a novel technique that combines the relatively high spatial resolution of high-field fMRI with the precision of optogenetic stimulation. Fiber optics that enable delivery of specific wavelengths of light deep into the brain in vivo are implanted into regions of interest in order to specifically stimulate targeted cell types that have been genetically induced to express light-sensitive trans-membrane conductance channels, called opsins. fMRI is used to provide a non-invasive method of determining the brain's global dynamic response to optogenetic stimulation of specific neural circuits through measurement of the blood-oxygen-level-dependent (BOLD) signal, which provides an indirect measurement of neuronal activity. This protocol describes the construction of fiber optic implants, the implantation surgeries, the imaging with photostimulation and the data analysis required to successfully perform ofMRI. In summary, the precise stimulation and whole-brain monitoring ability of ofMRI are crucial factors in making ofMRI a powerful tool for the study of the connectomics of the brain in both healthy and diseased states.
authors.affiliation: Neurology and Neurological Sciences, Stanford University.
authors.forename: Peter
authors.initials: P
authors.lastname: Lin
authors.affiliation: Electrical Engineering, Neurology and Neurological Sciences, Stanford University.
authors.forename: Zhongnan
authors.initials: Z
authors.lastname: Fang
authors.affiliation: Neurology and Neurological Sciences, Stanford University.
authors.forename: Jia
authors.initials: J
authors.lastname: Liu
authors.affiliation: Neurology and Neurological Sciences, Stanford University; Electrical Engineering, Neurology and Neurological Sciences, Stanford University; ljinhy@stanford.edu.
authors.forename: Jin Hyung
authors.initials: JH
authors.lastname: Lee
mesh_terms: D001921:Brain; D001931:Brain Mapping / Q000379:methods*; D006801:Humans; D008279:Magnetic Resonance Imaging / Q000379:methods*; D055355:Opsins; D062308:Optogenetics / Q000379:methods*
chemical_list: D055355:Opsins