title: Effect of the Concentration Difference between Magnesium Ions and Total Ribonucleotide Triphosphates in Governing the Specificity of T7 RNA Polymerase-Based Rolling Circle Transcription for Quantitative Detection.
abstract: T7 RNA polymerase-based rolling circle transcription (RCT) is a more powerful tool than universal runoff transcription and traditional DNA polymerase-based rolling circle amplification (RCA). However, RCT is rarely employed in quantitative detection due to its poor specificity for small single-stranded DNA (ssDNA), which can be transcribed efficiently by T7 RNA polymerase even without a promoter. Herein we show that the concentration difference between Mg(2+) and total ribonucleotide triphosphates (rNTPs) radically governs the specificity of T7 RNA polymerase. Only when the total rNTP concentration is 9 mM greater than the Mg(2+) concentration can T7 RNA polymerase transcribe ssDNA specifically and efficiently. This knowledge improves our traditional understanding of T7 RNA polymerase and makes convenient application of RCT in quantitative detection possible. Subsequently, an RCT-based label-free chemiluminescence method for microRNA detection was designed to test the capability of this sensing platform. Using this simple method, microRNA as low as 20 amol could be quantitatively detected. The results reveal that the developed sensing platform holds great potential for further applications in the quantitative detection of a variety of targets.
authors.affiliation: School of Pharmacy, Fudan University , 826 Zhangheng Road, Shanghai 201203, China.
authors.forename: Zhiyan
authors.initials: Z
authors.lastname: Li
authors.affiliation: School of Pharmacy, Fudan University , 826 Zhangheng Road, Shanghai 201203, China.
authors.forename: Choiwan
authors.initials: C
authors.lastname: Lau
authors.affiliation: School of Pharmacy, Fudan University , 826 Zhangheng Road, Shanghai 201203, China.
authors.forename: Jianzhong
authors.initials: J
authors.lastname: Lu
mesh_terms: D015374:Biosensing Techniques; D004277:DNA, Single-Stranded / Q000235:genetics; D012321:DNA-Directed RNA Polymerases / Q000378:metabolism*; D007477:Ions / Q000032:analysis / Q000378:metabolism; D008274:Magnesium / Q000032:analysis* / Q000378:metabolism; D011122:Polyphosphates / Q000032:analysis* / Q000378:metabolism; D012265:Ribonucleotides / Q000032:analysis* / Q000378:metabolism; D014158:Transcription, Genetic / Q000235:genetics; D014764:Viral Proteins / Q000378:metabolism*
chemical_list: D004277:DNA, Single-Stranded; D007477:Ions; D011122:Polyphosphates; D012265:Ribonucleotides; D014764:Viral Proteins; C062210:bacteriophage T7 RNA polymerase; D012321:DNA-Directed RNA Polymerases; D008274:Magnesium; C005692:triphosphoric acid