title: Catalytic and substrate promiscuity: distinct multiple chemistries catalysed by the phosphatase domain of receptor protein tyrosine phosphatase.
abstract: The presence of latent activities in enzymes is posited to underlie the natural evolution of new catalytic functions. However, the prevalence and extent of such substrate and catalytic ambiguity in evolved enzymes is difficult to address experimentally given the order-of-magnitude difference in the activities for native and, sometimes, promiscuous substrate/s. Further, such latent functions are of special interest when the activities concerned do not fall into the domain of substrate promiscuity. In the present study, we show a special case of such latent enzyme activity by demonstrating the presence of two mechanistically distinct reactions catalysed by the catalytic domain of receptor protein tyrosine phosphatase isoform δ (PTPRδ). The primary catalytic activity involves the hydrolysis of a phosphomonoester bond (C─O─P) with high catalytic efficiency, whereas the secondary activity is the hydrolysis of a glycosidic bond (C─O─C) with poorer catalytic efficiency. This enzyme also displays substrate promiscuity by hydrolysing diester bonds while being highly discriminative for its monoester substrates. To confirm these activities, we also demonstrated their presence on the catalytic domain of protein tyrosine phosphatase Ω (PTPRΩ), a homologue of PTPRδ. Studies on the rate, metal-ion dependence, pH dependence and inhibition of the respective activities showed that they are markedly different. This is the first study that demonstrates a novel sugar hydrolase and diesterase activity for the phosphatase domain (PD) of PTPRδ and PTPRΩ. This work has significant implications for both understanding the evolution of enzymatic activity and the possible physiological role of this new chemistry. Our findings suggest that the genome might harbour a wealth of such alternative latent enzyme activities in the same protein domain that renders our knowledge of metabolic networks incomplete.
authors.affiliation: Center for the Study of Systems Biology, School of Biology, Georgia Institute of Technology, 950, Atlantic Drive, Atlanta, GA 30332, U.S.A.
authors.forename: Bharath
authors.initials: B
authors.lastname: Srinivasan
authors.affiliation: Center for the Study of Systems Biology, School of Biology, Georgia Institute of Technology, 950, Atlantic Drive, Atlanta, GA 30332, U.S.A.
authors.forename: Hanna
authors.initials: H
authors.lastname: Marks
authors.affiliation: Center for the Study of Systems Biology, School of Biology, Georgia Institute of Technology, 950, Atlantic Drive, Atlanta, GA 30332, U.S.A.
authors.forename: Sreyoshi
authors.initials: S
authors.lastname: Mitra
authors.affiliation: Systems Mass Spectrometry Core (SyMS-C), Georgia Institute of Technology, 950 Atlantic Drive, Atlanta, GA 30318, U.S.A.
authors.forename: David M
authors.initials: DM
authors.lastname: Smalley
authors.affiliation: Center for the Study of Systems Biology, School of Biology, Georgia Institute of Technology, 950, Atlantic Drive, Atlanta, GA 30332, U.S.A. skolnick@gatech.edu.
authors.forename: Jeffrey
authors.initials: J
authors.lastname: Skolnick
mesh_terms: D002384:Catalysis; D020134:Catalytic Domain; D019295:Computational Biology; D054557:Receptor-Like Protein Tyrosine Phosphatases / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D055672:Static Electricity; D013379:Substrate Specificity
chemical_list: D054557:Receptor-Like Protein Tyrosine Phosphatases
keywords: catalytic promiscuity; glycosidic bond; phosphoester bond; protein tyrosine phosphatase; substrate promiscuity