title: Isolation and characterization of a bacterial strain that degrades cis-dichloroethenein the absence of aromatic inducers.
abstract: Bacteria capable of degrading cis-dichloroethene (cDCE) were screened from cDCE-contaminated soil, and YKD221, a bacterial strain that exhibited a higher growth on minimal salt agar plates in the presence of cDCE than in the absence of cDCE, were isolated. Phylogenetic studies of the 16S rRNA as well as gyrB, rpoD, and recA in YKD221 indicated that this strain is closely related to the type strains of Pseudomonas plecoglossicida, monteilii, and putida. An average nucleotide identity analysis indicated that YKD221 is most closely related to P. putida strains, including the type strain, which suggests that YKD221 belongs to P. putida. Although the genome of YKD221 was very similar to that of P. putida F1, a toluene-degrading strain, the YKD221 genome has 15 single-nucleotide polymorphisms and 4 insertions compared with the F1 genome. YKD221 caused the release of sufficient chloride ions from cDCE to suggest that the strain is able to completely dechlorinate and degrade cDCE. YKD221 also degraded trichloroethene but was unable to degrade trans-dichloroethene and tetrachloroethene. The degradation activity of YKD221 was elevated after growth on toluene. Inactivation of todC1, which encodes for a large subunit of the catalytic terminal component in toluene dioxygenase, resulted in a complete loss of growth on toluene and cDCE degradation activity. This is the first evidence of the involvement of todC1C2BA-coded toluene dioxygenase in cDCE degradation. YKD221 did not appear to grow on cDCE in a minimal salt liquid medium. However, YKD221 did exhibit an enhanced increase in cell concentration and volume of cells during growth on minimal salt agar plates with cDCE when first grown in LB medium. This behavior appears to have led us to misinterpret our initial results on YKD221 as an indication of improved growth in the presence of cDCE.
authors.affiliation: Department of Bioengineering, Nagaoka University of Technology.
authors.forename: Kenta
authors.initials: K
authors.lastname: Yonezuka
authors.forename: Naoto
authors.initials: N
authors.lastname: Araki
authors.forename: Jun
authors.initials: J
authors.lastname: Shimodaira
authors.forename: Shoko
authors.initials: S
authors.lastname: Ohji
authors.forename: Akira
authors.initials: A
authors.lastname: Hosoyama
authors.forename: Mitsuru
authors.initials: M
authors.lastname: Numata
authors.forename: Atsushi
authors.initials: A
authors.lastname: Yamazoe
authors.forename: Daisuke
authors.initials: D
authors.lastname: Kasai
authors.forename: Eiji
authors.initials: E
authors.lastname: Masai
authors.forename: Nobuyuki
authors.initials: N
authors.lastname: Fujita
authors.forename: Takayuki
authors.initials: T
authors.lastname: Ezaki
authors.forename: Masao
authors.initials: M
authors.lastname: Fukuda
mesh_terms: D000332:Aerobiosis; D001419:Bacteria / Q000145:classification / Q000235:genetics / Q000302:isolation & purification* / Q000378:metabolism*; D001673:Biodegradation, Environmental; D003470:Culture Media / Q000737:chemistry; D027081:DNA Gyrase / Q000235:genetics; D049308:Dioxygenases / Q000235:genetics; D005025:Ethylene Dichlorides / Q000378:metabolism*; D005798:Genes, Bacterial; D010802:Phylogeny; D011110:Polymorphism, Genetic; D011549:Pseudomonas / Q000145:classification / Q000235:genetics / Q000378:metabolism; D012336:RNA, Ribosomal, 16S; D011938:Rec A Recombinases / Q000235:genetics; D012988:Soil Microbiology; D014050:Toluene / Q000378:metabolism*
chemical_list: D003470:Culture Media; D005025:Ethylene Dichlorides; D012336:RNA, Ribosomal, 16S; D014050:Toluene; D049308:Dioxygenases; D011938:Rec A Recombinases; D027081:DNA Gyrase