title: Genetic and genomic dissection of Prolactin revealed potential association with milk production traits in riverine buffalo.
abstract: Milk yield and quality has been a major selection criterion for genetic improvement in livestock species. Role of Prolactin gene in determining milk quality in terms of protein profile, lactose, lipids and other imperative macromolecules is very important. In this context, genetic profiling of Prolactin gene in riverine buffalo of Pakistan was performed and potential genetic markers were identified illustrating worth of this gene in marker-assisted selection of superior dairy buffaloes. Series of wet and dry lab experimentation was performed starting with genomic DNA isolation from true to breed representatives of indigenous river buffalo (Nili-Ravi). After amplification of coding regions of Prolactin gene, products were eluted and sequenced by Sanger's chain termination method and aligned to get variations in genomic region. A total of 15 novel variations were identified and analyzed statistically for their significance at population level, haplotypes were constructed, and association was estimated. Phylogenetic analysis was performed to evaluate the rate of evolution for Prolactin gene in various mammalian species. Lastly, biological networking for this molecule was predicted to get the bigger pictorial of its functional machinery. Pathway analysis was performed to find its physiological mode of action in milk synthesis. This is a first report toward complete genetic screening of Prolactin gene in Pakistani buffaloes. Results of this study not only provide an insight for potential role of Prolactin gene in milk-producing abilities of buffalo but also suggest new directions for exploration of more genes that may have promising role to enhance future milk production capabilities of river buffalo breeds of Asian region through marker-assisted selection.
authors.affiliation: Institute of Biochemistry and Biotechnology, University of Veterinary and Animal Sciences, Lahore, 54000, Pakistan. asifnadeem@uvas.edu.pk.
authors.forename: A
authors.initials: A
authors.lastname: Nadeem
authors.affiliation: Institute of Biochemistry and Biotechnology, University of Veterinary and Animal Sciences, Lahore, 54000, Pakistan.
authors.forename: J
authors.initials: J
authors.lastname: Maryam
mesh_terms: D000818:Animals; D001947:Breeding; D002020:Buffaloes / Q000235:genetics / Q000502:physiology*; D003612:Dairying; D005260:Female; D007774:Lactation; D008892:Milk / Q000378:metabolism*; D010154:Pakistan; D010802:Phylogeny; D011388:Prolactin / Q000235:genetics*
chemical_list: D011388:Prolactin
keywords: Association; Biological networking; Haplotypes; Nili-Ravi; Pathway analysis; Prolactin; River buffalo; Single nucleotide polymorphism