title: Molecular cloning, computational analysis and expression pattern of forkhead box l2 (Foxl2) gene in catfish.
abstract: Foxl2 belongs to forkhead/HNF-3-related family of transcription factors which is involved in ovarian differentiation and development. In present study, the Foxl2 mRNA was cloned from ovary of C. batrachus. The full length cDNA sequence of the Foxl2 was 1056bp which consists of 5' (41bp) and 3' (106bp) non-coding regions, as well as a 909bp of open reading frame (ORF) that encodes 302 amino acids. The putative protein was having the theoretical molecular weight (MW) of 34.018kD and a calculated isoelectric point (pI) of 9.38. There were 11 serine (Ser), 5 threonine (Thr), and 5 tyrosine (Tyr) phosphorylation sites and 2 putative N-glycosylation sites on the predicted protein. The ligand binding sites were predicted to be present on amino acids 42, 49, 50, 91, 92 and 95 respectively. The signal peptide analysis predicted that C. batrachus Foxl2 is a non-secretory protein. The hydropathy profile of Foxl2 protein revealed that this protein is hydrophilic in nature. Protein-protein interaction demonstrated that Foxl2 protein chiefly interacts with cytochrome P450 protein family. The mRNA transcript analysis of various tissues indicated that the C. batrachus Foxl2 mRNA was more expressed in the brain, pituitary and ovary in female while, the former two tissues and testis showed low expression in male. This study provides a basis for further structural and functional exploration of the Foxl2 from C. batrachus, including its deduced protein and its signal transduction function.
authors.affiliation: Division of Fish Genetics and Biotechnology, Central Institute of Fisheries Education, Mumbai 400061, India.
authors.forename: Irfan Ahmad
authors.initials: IA
authors.lastname: Bhat
authors.affiliation: Division of Fish Genetics and Biotechnology, Central Institute of Fisheries Education, Mumbai 400061, India.
authors.forename: Mohd Ashraf
authors.initials: MA
authors.lastname: Rather
authors.affiliation: Division of Aquatic Environmental Management, Central Institute of Fisheries Education, Mumbai 400061, India.
authors.forename: Jaffer Yousuf
authors.initials: JY
authors.lastname: Dar
authors.affiliation: Division of Fish Genetics and Biotechnology, Central Institute of Fisheries Education, Mumbai 400061, India. Electronic address: rupams@cife.edu.in.
authors.forename: Rupam
authors.initials: R
authors.lastname: Sharma
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D002397:Catfishes / Q000235:genetics*; D003001:Cloning, Molecular; D019295:Computational Biology; D018076:DNA, Complementary / Q000235:genetics; D005260:Female; D051858:Forkhead Transcription Factors / Q000737:chemistry / Q000145:classification / Q000235:genetics*; D015870:Gene Expression; D008297:Male; D010802:Phylogeny; D017386:Sequence Homology, Amino Acid
chemical_list: D018076:DNA, Complementary; D051858:Forkhead Transcription Factors
keywords: Clarias batrachus; Hydropathy; Ligand; Ovary; mRNA