title: Neuron-Like Networks Between Ribosomal Proteins Within the Ribosome.
abstract: From brain to the World Wide Web, information-processing networks share common scale invariant properties. Here, we reveal the existence of neural-like networks at a molecular scale within the ribosome. We show that with their extensions, ribosomal proteins form complex assortative interaction networks through which they communicate through tiny interfaces. The analysis of the crystal structures of 50S eubacterial particles reveals that most of these interfaces involve key phylogenetically conserved residues. The systematic observation of interactions between basic and aromatic amino acids at the interfaces and along the extension provides new structural insights that may contribute to decipher the molecular mechanisms of signal transmission within or between the ribosomal proteins. Similar to neurons interacting through "molecular synapses", ribosomal proteins form a network that suggest an analogy with a simple molecular brain in which the "sensory-proteins" innervate the functional ribosomal sites, while the "inter-proteins" interconnect them into circuits suitable to process the information flow that circulates during protein synthesis. It is likely that these circuits have evolved to coordinate both the complex macromolecular motions and the binding of the multiple factors during translation. This opens new perspectives on nanoscale information transfer and processing.
authors.affiliation: Information Génomique et Structurale CNRS, Aix-Marseille Université, UMR7256 FR-13288 Marseille, France.
authors.forename: Olivier
authors.initials: O
authors.lastname: Poirot
authors.affiliation: Information Génomique et Structurale CNRS, Aix-Marseille Université, UMR7256 FR-13288 Marseille, France.
authors.forename: Youri
authors.initials: Y
authors.lastname: Timsit
mesh_terms: D000595:Amino Acid Sequence; D001426:Bacterial Proteins / Q000378:metabolism; D001665:Binding Sites; D017124:Conserved Sequence; D053263:Gene Regulatory Networks; D008958:Models, Molecular; D011485:Protein Binding; D060066:Protein Interaction Maps; D012269:Ribosomal Proteins / Q000737:chemistry* / Q000378:metabolism*; D012270:Ribosomes / Q000737:chemistry* / Q000378:metabolism*
chemical_list: D001426:Bacterial Proteins; D012269:Ribosomal Proteins