title: Computational approaches to find the active binding sites of biological targets against busulfan.
abstract: Determination of electrophilic and nucleophilic sites of a molecule is the primary task to find the active sites of the lead molecule. In the present study, the active sites of busulfan have been predicted by molecular electrostatic potential surface and Fukui function analysis with the help of dispersion corrected density functional theory. Similarly, the identification of active binding sites of the proteins against lead compound plays a vital role in the field of drug discovery. Rigid and flexible molecular docking approaches are used for this purpose. For rigid docking, Hex 8.0.0 software employing fast Fourier transform (FFT) algorithm has been used. The partial flexible blind docking simulations have been performed with AutoDock 4.2 software; where a Lamarckian genetic algorithm is employed. The results showed that the most electrophilic atoms of busulfan bind with the targets. It is clear from the docking studies that busulfan has inhibition capability toward the targets 12CA and 1BZM. Graphical Abstract Docking of ligand and protein.
authors.affiliation: Department of Physics, University of Lucknow, Lucknow, 226 007, India. karthiphy84@gmail.com.
authors.forename: T
authors.initials: T
authors.lastname: Karthick
authors.affiliation: Department of Physics, University of Lucknow, Lucknow, 226 007, India.
authors.forename: Poonam
authors.initials: P
authors.lastname: Tandon
mesh_terms: D000465:Algorithms; D001665:Binding Sites; D002066:Busulfan / Q000737:chemistry* / Q000378:metabolism; D020134:Catalytic Domain; D019295:Computational Biology / Q000379:methods*; D008968:Molecular Conformation; D062105:Molecular Docking Simulation; D011485:Protein Binding; D000072417:Protein Domains; D011506:Proteins / Q000737:chemistry* / Q000378:metabolism; D055672:Static Electricity
chemical_list: D011506:Proteins; D002066:Busulfan
keywords: Busulfan; Fukui function; Molecular electrostatic potential; Partial flexible blind docking; Rigid docking