title: Properties and genomic analysis of Lactococcus garvieae lysogenic bacteriophage PLgT-1, a new member of Siphoviridae, with homology to Lactococcus lactis phages.
abstract: The lysogenic phage PLgT-1 is highly prevalent in Lactococcus garvieae, which is a serious bacterial pathogen in marine fish. Therefore, information regarding this phage is one of the key factors to predict the evolution of this bacterium. However, many properties of this phage, its complete genome sequence, and its relationship with other viral communities has not been investigated to date. Here, we demonstrated that the phage PLgT-1 was not only induced by an induction agent (Mitomycin C), but could be released frequently during cell division in a nutrient-rich environment or in natural seawater. Integration of PLgT-1 into non-lysogenic bacteria via transduction changed the genotype, resulting in the diversification of L. garvieae. The complete DNA sequence of PLgT-1 was also determined. This phage has a dsDNA genome of 40,273bp with 66 open reading frames (ORFs). Of these, the biological functions of 24 ORFs could be predicted but those of 42 ORFs are unknown. Thus, PLgT-1 is a novel phage with several novel proteins encoded in its genome. The strict MegaBLAST search program for the PLgT-1 genome revealed that this phage had no similarities with other previously investigated phages specific to L. garvieae (WP-2 and GE1). Notably, PLgT-1 was relatively homologous with several phages of Lactococcus lactis and 17 of the 24 predicted proteins encoded in PLgT-1 were homologous with the deduced proteins of various phages from these dairy bacteria. Comparative genome analysis revealed that the L. garvieae phage PLgT-1 was most closely related to the L. lactis phage TP712. However, they differed from each other in genome size and gene arrangement. The results obtained in this study suggest that the lysogenic phage PLgT-1 is a new member of the family Siphoviridae and has been involved in horizontal gene exchange with microbial communities, especially with L. lactis and its phages.
authors.affiliation: Faculty of Agriculture, University of Miyazaki, Gakuen kibanadai Nishi 1-1, Miyazaki 889-2192, Japan; Faculty of Fisheries, Vietnam National University of Agriculture, Hanoi, Vietnam.
authors.forename: Truong Dinh
authors.initials: TD
authors.lastname: Hoai
authors.affiliation: National Research Institute of Fisheries Science, Fisheries Research Agency, 2-12-4 Fukuura, Kanazawa, Yokohama, Kanagawa 236-8648, Japan. Electronic address: nishikii@affrc.go.jp.
authors.forename: Issei
authors.initials: I
authors.lastname: Nishiki
authors.affiliation: Faculty of Agriculture, University of Miyazaki, Gakuen kibanadai Nishi 1-1, Miyazaki 889-2192, Japan.
authors.forename: Terutoyo
authors.initials: T
authors.lastname: Yoshida
mesh_terms: D001433:Bacteriolysis; D005075:Biological Evolution; D023061:Gene Order; D015321:Gene Rearrangement; D016679:Genome, Viral; D023281:Genomics / Q000379:methods; D005838:Genotype; D017045:Lactococcus / Q000821:virology*; D013294:Lactococcus lactis / Q000821:virology; D010802:Phylogeny; D040901:Proteomics / Q000379:methods; D012689:Sequence Homology, Nucleic Acid; D017906:Siphoviridae / Q000145:classification / Q000302:isolation & purification / Q000502:physiology* / Q000648:ultrastructure; D014161:Transduction, Genetic
keywords: Genomic analysis; Lactococcus garvieae; Marine fish; Phage PLgT-1; Properties