Non-statistical 13C Fractionation Distinguishes Co-incident and Divergent Steps in the Biosynthesis of the Alkaloids Nicotine and Tropine.
During the biosynthesis of natural products, isotopic fractionation occurs due to the selectivity of enzymes for the heavier or lighter isotopomers. As only some of the positions in the molecule are implicated in a given reaction mechanism, position-specific fractionation occurs, leading to a non-statistical distribution of isotopes. This can be accessed by isotope ratio monitoring (13)C NMR spectrometry. The solanaceous alkaloids S-(-)-nicotine and hyoscyamine (atropine) are related in having a common intermediate, but downstream enzymatic steps diverge, providing a relevant test case to: (a) elucidate the isotopic affiliation between carbon atoms in the alkaloids and those in the precursors; (b) obtain information about the kinetic isotope effects of as yet undescribed enzymes, thus to make predictions as to their possible mechanism(s). We show that the position-specific (13)C/(12)C ratios in the different moieties of these compounds can satisfactorily be related to their known precursors and to the known kinetic isotope effects of enzymes involved in their biosynthesis, or to similar reaction mechanisms. Thus, the pathway to the common intermediate, N-methyl-Δ(1)-pyrrolinium, is seen to introduce similar isotope distribution patterns in the two alkaloids independent of plant species, whereas the remaining atoms of each target compound, which are of different origins, reflect their specific metabolic ancestry. We further demonstrate that the measured (13)C distribution pattern can be used to deduce aspects of the reaction mechanism of enzymes still to be identified.
From the Elucidation of Biosynthesis by Isotopic Spectrometry Group, Interdisciplinary Chemistry: Synthesis, Analysis, Modeling, CNRS-University of Nantes UMR6230, F-44322 Nantes, France and the Institute of Applied Radiation Chemistry, Faculty of Chemistry, Łodź University of Technology, ul. Stefana Żeromskiego 116, 90-924 Łódź, Poland.
Katarzyna M
KM
Romek
From the Elucidation of Biosynthesis by Isotopic Spectrometry Group, Interdisciplinary Chemistry: Synthesis, Analysis, Modeling, CNRS-University of Nantes UMR6230, F-44322 Nantes, France and.
Gérald S
GS
Remaud
From the Elucidation of Biosynthesis by Isotopic Spectrometry Group, Interdisciplinary Chemistry: Synthesis, Analysis, Modeling, CNRS-University of Nantes UMR6230, F-44322 Nantes, France and.
Virginie
V
Silvestre
the Institute of Applied Radiation Chemistry, Faculty of Chemistry, Łodź University of Technology, ul. Stefana Żeromskiego 116, 90-924 Łódź, Poland.
Piotr
P
Paneth
From the Elucidation of Biosynthesis by Isotopic Spectrometry Group, Interdisciplinary Chemistry: Synthesis, Analysis, Modeling, CNRS-University of Nantes UMR6230, F-44322 Nantes, France and richard.robins@univ-nantes.fr.
Richard J
RJ
Robins
D002250:Carbon Radioisotopes / Q000737:chemistry; D009538:Nicotine / Q000096:biosynthesis* / Q000737:chemistry; D014026:Nicotiana / Q000737:chemistry / Q000378:metabolism*; D014326:Tropanes / Q000737:chemistry / Q000378:metabolism*
D002250:Carbon Radioisotopes; D014326:Tropanes; D009538:Nicotine; C005864:tropine
alkaloid; biosynthesis; enzyme; isotope effect; nicotine; nuclear magnetic resonance (NMR); plant biochemistry; retro-biosynthesis; tropine