Release of Entropic Spring Reveals Conformational Coupling Mechanism in the ABC Transporter BtuCD-F.
Substrate translocation by ATP-binding cassette (ABC) transporters involves coupling of ATP binding and hydrolysis in the nucleotide-binding domains (NBDs) to conformational changes in the transmembrane domains. We used molecular dynamics simulations to investigate the atomic-level mechanism of conformational coupling in the ABC transporter BtuCD-F, which imports vitamin B12 across the inner membrane of Escherichia coli. Our simulations show how an engineered disulfide bond across the NBD dimer interface reduces conformational fluctuations and hence configurational entropy. As a result, the disulfide bond is under substantial mechanical stress. Releasing this entropic spring, as is the case in the wild-type transporter, combined with analyzing the pairwise forces between individual residues, unravels the coupling mechanism. The identified pathways along which force is propagated from the NBDs via the coupling helix to the transmembrane domains are composed of highly conserved residues, underlining their functional relevance. This study not only reveals the details of conformational coupling in BtuCD-F, it also provides a promising approach to other long-range conformational couplings, e.g., in ABC exporters or other ATP-driven molecular machines.
Center for Theoretical Chemistry, Faculty of Chemistry and Biochemistry, Ruhr-University, Bochum, Germany.
Marten
M
Prieß
Center for Theoretical Chemistry, Faculty of Chemistry and Biochemistry, Ruhr-University, Bochum, Germany. Electronic address: lars.schaefer@ruhr-uni-bochum.de.
Lars V
LV
Schäfer
D018528:ATP-Binding Cassette Transporters / Q000235:genetics / Q000378:metabolism*; D000255:Adenosine Triphosphate / Q000378:metabolism; D019277:Entropy; D004926:Escherichia coli; D029968:Escherichia coli Proteins / Q000235:genetics / Q000378:metabolism*; D008051:Lipid Bilayers; D056004:Molecular Dynamics Simulation; D009154:Mutation; D033902:Periplasmic Binding Proteins / Q000378:metabolism*; D010713:Phosphatidylcholines / Q000737:chemistry; D055503:Protein Multimerization; D055550:Protein Stability; D013314:Stress, Mechanical; D014867:Water / Q000378:metabolism
D018528:ATP-Binding Cassette Transporters; C050021:BtuC peptide, E coli; C050022:BtuD peptide, E coli; D029968:Escherichia coli Proteins; D008051:Lipid Bilayers; D033902:Periplasmic Binding Proteins; D010713:Phosphatidylcholines; C446048:btuF protein, E coli; D014867:Water; D000255:Adenosine Triphosphate; C028694:1-palmitoyl-2-oleoylphosphatidylcholine