ProSAT+: visualizing sequence annotations on 3D structure.
PRO: tein S: tructure A: nnotation T: ool-plus (ProSAT(+)) is a new web server for mapping protein sequence annotations onto a protein structure and visualizing them simultaneously with the structure. ProSAT(+) incorporates many of the features of the preceding ProSAT and ProSAT2 tools but also provides new options for the visualization and sharing of protein annotations. Data are extracted from the UniProt KnowledgeBase, the RCSB PDB and the PDBe SIFTS resource, and visualization is performed using JSmol. User-defined sequence annotations can be added directly to the URL, thus enabling visualization and easy data sharing. ProSAT(+) is available at http://prosat.h-its.org.
Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Im Neuenheimer Feld 205, Heidelberg 69120, Germany.
Antonia
A
Stank
Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany.
Stefan
S
Richter
Heidelberg Institute for Theoretical Studies (HITS), Schloss-Wolfsbrunnenweg 35, Heidelberg 69118, Germany Center for Molecular Biology at Heidelberg University (ZMBH), DKFZ-ZMBH Alliance and Interdisciplinary Center for Scientific Computing (IWR), Im Neuenheimer Feld 282, Heidelberg 69120, Germany rebecca.wade@h-its.org.
Rebecca C
RC
Wade
D003196:Computer Graphics; D030562:Databases, Protein; D020407:Internet; D008958:Models, Molecular; D058977:Molecular Sequence Annotation / Q000379:methods*; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry*; D012984:Software
D011506:Proteins
protein mutation; protein structure; sequence annotation; visualization; web server