Mapping of protein-protein interaction network of Alexander disease.
Alexander disease (ALXD) is slowly progressive neurodegenerative disorder which affects white matter of the central nervous system. The main cause of disorder is mutation in GFAP gene and mutation in some other genes were also reported. This study was aimed at getting a better insight into ALXD pathogenesis and identifying the important functional and highly interconnected nodes in human protein interaction network, identifying the important sub-networks in the system could be helpful in understanding the underlying molecular mechanism. The topological analysis of human protein interaction network strategy to identify highly interconnected sub-network modules from which six proteins are found i.e. GFAP, PLEC, CRYAB, NDUFV1, CASP3 and MAPK14 plays important role in disease. Further, the enrichment analysis of interaction network identifies crucial pathways in which most of the diseased proteins overlaps. Through system biology approach, the undirected human protein interaction network of ALXD is buildup with the help of Cytoscape tool and its various plugins helps to investigate network further. The systematic approach suggests the finding of previously known proteins, GFAP, PLEC, CRYAB, NDUFV1, CASP3 and MAPK14 can be used as a drug targets and potential treatment discovered also enrichment analysis will provide guidance for the future study on Alexander disease.
D.A.V. College Department of Zoology Kanpur (U.P.) India.
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Centre of DBT (Govt. of India), D.G. (P.G.) College Bioinformatics Infrastructure Facility Kanpur (U.P) India.
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Centre of DBT (Govt. of India), D.G. (P.G.) College Bioinformatics Infrastructure Facility Kanpur (U.P) India supriya.dixit.28@gmail.com.
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D038261:Alexander Disease / Q000378:metabolism*; D000465:Algorithms; D016000:Cluster Analysis; D006801:Humans; D025941:Protein Interaction Mapping / Q000379:methods*; D060066:Protein Interaction Maps