The mechanism by which P250L mutation impairs flavivirus-NS1 dimerization: an investigation based on molecular dynamics simulations.
The flavivirus non-structural protein 1 (NS1) is a conserved glycoprotein with as yet undefined biological function. This protein dimerizes when inside infected cells or associated to cell membranes but also forms lipid-associated hexamers when secreted to the extracellular space. A single amino acid substitution (P250L) is capable of preventing the dimerization of NS1 resulting in lower virulence and slower virus replication. In this work, based on molecular dynamics simulations of the dengue-2 virus NS1 [Formula: see text]-ladder monomer as a core model, we found that this mutation can induce several conformational changes that importantly affect critical monomer-monomer interactions. Based on additional simulations, we suggest a mechanism by which a highly orchestrated sequence of events propagate the local perturbations around the mutation site towards the dimer interface. The elucidation of such a mechanism could potentially support new strategies for rational production of live-attenuated vaccines and highlights a step forward in the development of novel anti-flavivirus measures.
Instituto de Química, Universidade Federal do Rio de Janeiro, Av. Athos da Silveira Ramos, 149 - Centro de Tecnologia, Bloco A, Sala 609, Cidade Universitária, Rio de Janeiro, RJ, 21941-909, Brazil.
Edson R A
ER
Oliveira
Instituto de Química, Universidade Federal do Rio de Janeiro, Av. Athos da Silveira Ramos, 149 - Centro de Tecnologia, Bloco A, Sala 609, Cidade Universitária, Rio de Janeiro, RJ, 21941-909, Brazil.
Ricardo B
RB
de Alencastro
Instituto de Química, Universidade Federal do Rio de Janeiro, Av. Athos da Silveira Ramos, 149 - Centro de Tecnologia, Bloco A, Sala 609, Cidade Universitária, Rio de Janeiro, RJ, 21941-909, Brazil. bruno.horta@gmail.com.
Bruno A C
BA
Horta
D005416:Flavivirus; D056004:Molecular Dynamics Simulation; D009154:Mutation; D000072757:Protein Conformation, beta-Strand; D055503:Protein Multimerization; D020836:Protein Structure, Quaternary; D017361:Viral Nonstructural Proteins / Q000737:chemistry* / Q000235:genetics*
D017361:Viral Nonstructural Proteins
Antivirals; Flavivirus; Molecular dynamics simulation; NS1; Vaccine; Virology