High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T).
Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5(T) (DSM 17707(T)) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5(T) is part of the G enomic E ncyclopedia of B acteria and A rchaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5(T) has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5(T). Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5(T) feeds rather on proteins than saccharides and lipids.
Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Nisreen
N
Tashkandy
Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Sari
S
Sabban
Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Mohammad
M
Fakieh
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Jan P
JP
Meier-Kolthoff
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Sixing
S
Huang
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Brian J
BJ
Tindall
HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany.
Manfred
M
Rohde
Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia ; Center of Nanotechnology, King Abdulaziz University, Jeddah, Saudi Arabia.
Mohammed N
MN
Baeshen
Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia ; Center of Nanotechnology, King Abdulaziz University, Jeddah, Saudi Arabia.
Nabih A
NA
Baeshen
Centre for Algorithmic Biotechnology, St. Petersburg State University, St. Petersburg, Russia.
Alla
A
Lapidus
Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Alex
A
Copeland
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA USA.
Manoj
M
Pillay
Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
T B K
TB
Reddy
Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Marcel
M
Huntemann
Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Amrita
A
Pati
Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Natalia
N
Ivanova
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA USA.
Victor
V
Markowitz
Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Tanja
T
Woyke
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Markus
M
Göker
School of Biology, Newcastle University, Newcastle upon Tyne, UK.
Hans-Peter
HP
Klenk
Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia ; Department of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Nikos C
NC
Kyrpides
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Richard L
RL
Hahnke
Aerobic; Bacteroidetes; Carbohydrate active enzyme; Flavobacteriaceae; GEBA; GGDC; Gliding motility; Greenhouse soil; KMG-1; Polysaccharide utilization loci; Tree of Life