The Origin of Selectivity in the Complexation of N-Methyl Amino Acids by Tetraphosphonate Cavitands.
We report on the eligibility of tetraphosphonate resorcinarene cavitands for the molecular recognition of amino acids. We determined the crystal structure of 13 complexes of the tetraphosphonate cavitand Tiiii[H, CH3, CH3] with amino acids. (1)H NMR and (31)P NMR experiments and ITC analysis were performed to probe the binding between cavitand Tiiii[C3H7, CH3, C2H5] or the water-soluble counterpart Tiiii[C3H6Py(+)Cl(-), CH3, C2H5] and a selection of representative amino acids. The reported studies and results allowed us (i) to highlight the noncovalent interactions involved in the binding event in each case; (ii) to investigate the ability of tetraphosphonate cavitand receptors to discriminate between the different amino acids; (iii) to calculate the Ka values of the different complexes formed and evaluate the thermodynamic parameters of the complexation process, dissecting the entropic and enthalpic contributions; and (iv) to determine the solvent influence on the complexation selectivity. By moving from methanol to water, the complexation changed from entropy driven to entropy opposed, leading to a drop of almost three orders in the magnitude of the Ka. However, this reduction in binding affinity is associated with a dramatic increase in selectivity, since in aqueous solutions only N-methylated amino acids are effectively recognized. The thermodynamic profile of the binding does not change in PBS solution. The pivotal role played by cation-π interactions is demonstrated by the linear correlation found between the log Ka in methanol solution and the depth of (+)N-CH3 cavity inclusion in the molecular structures. These findings are relevant for the potential use of phosphonate cavitands as synthetic receptors for the detection of epigenetic modifications of histones in physiological media.
Department of Chemistry, University of Parma, and INSTM , UdR Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
Roberta
R
Pinalli
CEB Centre of Excellence in Biocrystallography, Department of Chemical and Pharmaceutical Sciences, University of Trieste , Via L. Giorgieri 1, 34127 Trieste, Italy.
Giovanna
G
Brancatelli
Department of Chemistry, University of Parma, and INSTM , UdR Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
Alessandro
A
Pedrini
Department of Chemistry, University of Parma, and INSTM , UdR Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
Daniela
D
Menozzi
Catalan Institution for Research and Advanced Studies (ICREA) , Passeig Lluís Companys, 23, 08018 Barcelona, Spain.
Daniel
D
Hernández
Catalan Institution for Research and Advanced Studies (ICREA) , Passeig Lluís Companys, 23, 08018 Barcelona, Spain.|Institute of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology , Avgda. Països Catalans 16, 43007 Tarragona, Spain.
Pablo
P
Ballester
CEB Centre of Excellence in Biocrystallography, Department of Chemical and Pharmaceutical Sciences, University of Trieste , Via L. Giorgieri 1, 34127 Trieste, Italy.
Silvano
S
Geremia
Department of Chemistry, University of Parma, and INSTM , UdR Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy.
Enrico
E
Dalcanale