Evaluation of the stability of reference genes in bone mesenchymal stem cells from patients with avascular necrosis of the femoral head.
This study aimed to evaluate 12 genes (18S, GAPDH, B2M, ACTB, ALAS1, GUSB, HPRT1, PBGD, PPIA, PUM1, RPL29, and TBP) for their reliability and stability as reference sequences for real-time quantitative PCR (RT-qPCR) in bone marrow-derived mesenchymal stem cells (BMSCs) isolated from patients with avascular necrosis of the femoral head (ANFH). BMSCs were isolated from 20 ANFH patients divided into four groups according to etiology, and four donors with femoral neck fractures. Total RNA was isolated from BMSCs and reverse transcribed into complementary DNA, which served as a template for RT-qPCR. Three commonly used programs were then used to analyze the results. Reference gene expression varied within each group, between specific groups, and among all five groups. Based on comparisons of all five groups, two of the programs used suggested that HPRT1 was the most stable reference gene, while 18S and ACTB were the most variable. Among the 12 candidate reference genes, HPRT1 exhibited the greatest reliability, followed by PPIA. Thus, these sequences could be used as references for the normalization of RT-qPCR results.
Department of Orthopaedics, The Second Hospital of Jilin University, Changchun, Jilin, China.
X N
XN
Wang
China-Japan Union Hospital of Jilin University, Changchun, Jilin, China.
Q W
QW
Yang
Department of Orthopaedics, The Second Hospital of Jilin University, Changchun, Jilin, China.
Z W
ZW
Du
Department of Orthopaedics, The Second Hospital of Jilin University, Changchun, Jilin, China.
T
T
Yu
Department of Orthopaedics, The Second Hospital of Jilin University, Changchun, Jilin, China.
Y G
YG
Qin
Department of Orthopaedics, The Second Hospital of Jilin University, Changchun, Jilin, China.
Y
Y
Song
Department of Orthopaedics, The Second Hospital of Jilin University, Changchun, Jilin, China.
M
M
Xu
Department of Orthopaedics, The Second Hospital of Jilin University, Changchun, Jilin, China.
J C
JC
Wang
D001842:Bone and Bones / Q000378:metabolism / Q000473:pathology; D005260:Female; D005271:Femur Head Necrosis / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D005786:Gene Expression Regulation / Q000235:genetics; D006801:Humans; D008297:Male; D059630:Mesenchymal Stem Cells / Q000378:metabolism*; D014176:Protein Biosynthesis / Q000235:genetics*; D060888:Real-Time Polymerase Chain Reaction / Q000379:methods / Q000592:standards*; D012015:Reference Standards