Revealing nonergodic dynamics in living cells from a single particle trajectory.
We propose the improved ergodicity and mixing estimators to identify nonergodic dynamics from a single particle trajectory. The estimators are based on the time-averaged characteristic function of the increments and can thus capture additional information on the process as compared to the conventional time-averaged mean-square displacement. The estimators are first investigated and validated for several models of anomalous diffusion, such as ergodic fractional Brownian motion and diffusion on percolating clusters, and nonergodic continuous-time random walks and scaled Brownian motion. The estimators are then applied to two sets of earlier published trajectories of mRNA molecules inside live Escherichia coli cells and of Kv2.1 potassium channels in the plasma membrane. These statistical tests did not reveal nonergodic features in the former set, while some trajectories of the latter set could be classified as nonergodic. Time averages along such trajectories are thus not representative and may be strongly misleading. Since the estimators do not rely on ensemble averages, the nonergodic features can be revealed separately for each trajectory, providing a more flexible and reliable analysis of single-particle tracking experiments in microbiology.
Laboratoire de Physique de la Matière Condensée (UMR 7643), CNRS-Ecole Polytechnique, 91128 Palaiseau, France.
Yann
Y
Lanoiselée
Laboratoire de Physique de la Matière Condensée (UMR 7643), CNRS-Ecole Polytechnique, 91128 Palaiseau, France.
Denis S
DS
Grebenkov
D002462:Cell Membrane / Q000378:metabolism; D004058:Diffusion; D004926:Escherichia coli / Q000166:cytology / Q000378:metabolism*; D009038:Motion; D051669:Shab Potassium Channels / Q000378:metabolism
D051669:Shab Potassium Channels