title: Association Study Between SLC15A4 Polymorphisms and Haplotypes and Systemic Lupus Erythematosus in a Han Chinese Population.
abstract: OBJECTIVE
  The gene SLC15A4 (solute carrier family 15 [oligopeptide transporter], member 4) has been reported as contributing to the pathogenesis of systemic lupus erythematosus (SLE). We performed a case-control replication study to investigate further the association between single-nucleotide polymorphisms (SNPs) in the SLC15A4 gene and systemic SLE in a Han Chinese population.
  
  
  METHODS
  In Han Chinese SLE patients and healthy individuals (n = 355, 375, respectively), 18 SNPs in the SLC15A4 gene were genotyped using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and TaqMan SNP genotyping assays. Analyses of allele frequencies and genotypes using codominant, dominant, and recessive models were conducted, as well as a linkage disequilibrium analysis. P values < 0.05 were considered significant.
  
  
  RESULTS
  Allele frequencies of five of the analyzed SNPs were significantly associated with SLE. Under a codominant model the genotype frequencies of rs3765108 AG and rs7308691 AT were significantly higher in the SLE group than the control group (p = 0.019, 0.049, respectively). Under a dominant model the rs1385374 (TT+CT) SNP carried a higher risk of SLE than (CC) (p = 0.042). One SLC15A4 haplotype (TA), which consists of 2 SNPs (rs959989 and rs983492), was associated with SLE (p = 0.024).
  
  
  CONCLUSIONS
  Our study determined that five SNPs (rs959989, rs1385374, rs983492, rs12298615, and rs10847697) are associated with SLE. Thus, SLC15A4 may be important in the pathogenesis of SLE in Han Chinese patients.
authors.affiliation: 1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
authors.forename: Mingwang
authors.initials: M
authors.lastname: Zhang
authors.affiliation: 2 Department of Dermatology, Affiliated Hospital of Guilin Medical College , Guilin, China .
authors.forename: Fangru
authors.initials: F
authors.lastname: Chen
authors.affiliation: 1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
authors.forename: Dongmei
authors.initials: D
authors.lastname: Zhang
authors.affiliation: 1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
authors.forename: Zhifang
authors.initials: Z
authors.lastname: Zhai
authors.affiliation: 1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
authors.forename: Fei
authors.initials: F
authors.lastname: Hao
mesh_terms: D000328:Adult; D000483:Alleles; D044466:Asian People / Q000235:genetics; D002352:Carrier Proteins / Q000235:genetics* / Q000378:metabolism; D016022:Case-Control Studies; D002681:China / Q000453:epidemiology; D005006:Ethnicity / Q000235:genetics; D005260:Female; D005787:Gene Frequency; D020022:Genetic Predisposition to Disease; D006239:Haplotypes; D006801:Humans; D015810:Linkage Disequilibrium; D008180:Lupus Erythematosus, Systemic / Q000453:epidemiology / Q000235:genetics* / Q000378:metabolism; D008297:Male; D026901:Membrane Transport Proteins; D008875:Middle Aged; D009419:Nerve Tissue Proteins / Q000235:genetics* / Q000378:metabolism; D020641:Polymorphism, Single Nucleotide
chemical_list: D002352:Carrier Proteins; D026901:Membrane Transport Proteins; D009419:Nerve Tissue Proteins; C491359:SLC15A4 protein, human