title: Mass spectrometry data from a quantitative analysis of protein expression in gills of immuno-challenged blue mussels (Mytilus edulis).
abstract: Here, we provide the dataset associated with our research article on the potential effects of ocean acidification on antimicrobial peptide (AMP) activity in the gills of Mytilus edulis, "Impact of ocean acidification on antimicrobial activity in gills of the blue mussel (Mytilus edulis)" [1]. Blue mussels were stimulated with lipopolysaccharides and samples were collected at different time points post injection. Protein extracts were prepared from the gills, digested using trypsin and a full in-depth proteome investigation was performed using liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS). Protein identification and quantification was performed using the MaxQuant 1.5.1.2 software, "MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification" [2].
authors.affiliation: Department of Chemistry - BMC, Analytical Chemistry and SciLifeLab, Uppsala University, Box 599, SE - 75124 Uppsala, Sweden.
authors.forename: K
authors.initials: K
authors.lastname: Hörnaeus
authors.affiliation: Department of Chemistry - BMC, Analytical Chemistry and SciLifeLab, Uppsala University, Box 599, SE - 75124 Uppsala, Sweden.
authors.forename: J
authors.initials: J
authors.lastname: Guillemant
authors.affiliation: Department of Chemistry - BMC, Analytical Chemistry and SciLifeLab, Uppsala University, Box 599, SE - 75124 Uppsala, Sweden.
authors.forename: J
authors.initials: J
authors.lastname: Mi
authors.affiliation: The Royal Swedish Academy of Sciences, Sven Lovén Center for Marine Science, Kristineberg 566, SE - 451 78 Fiskebäckskil, Sweden; Department of Natural Science, Kristianstad University, SE - 291 88 Kristianstad, Sweden.
authors.forename: B
authors.initials: B
authors.lastname: Hernroth
authors.affiliation: Department of Chemistry - BMC, Analytical Chemistry and SciLifeLab, Uppsala University, Box 599, SE - 75124 Uppsala, Sweden.
authors.forename: J
authors.initials: J
authors.lastname: Bergquist
authors.affiliation: Department of Chemistry - BMC, Analytical Chemistry and SciLifeLab, Uppsala University, Box 599, SE - 75124 Uppsala, Sweden.
authors.forename: S Bergström
authors.initials: SB
authors.lastname: Lind
keywords: Blue mussels; Gills; Mass spectrometry data; Mytilus edulis; Quantitative proteomics