title: Analyzing the substitution effect on the CoMFA results within the framework of density functional theory (DFT).
abstract: Though QSAR was originally developed in the context of physical organic chemistry, it has been applied very extensively to chemicals (drugs) which act on biological systems, in this idea one of the most important QSAR methods is the 3D QSAR model. However, due to the complexity of understanding the results it is necessary to postulate new methodologies to highlight their physical-chemical meaning. In this sense, this work postulates new insights to understand the CoMFA results using molecular quantum similarity and chemical reactivity descriptors within the framework of density functional theory. To obtain these insights a simple theoretical scheme involving quantum similarity (overlap, coulomb operators, their euclidean distances) and chemical reactivity descriptors such as chemical potential (μ), hardness (ɳ), softness (S), electrophilicity (ω), and the Fukui functions, was used to understand the substitution effect. In this sense, this methodology can be applied to analyze the biological activity and the stabilization process in the non-covalent interactions on a particular molecular set taking a reference compound.
authors.affiliation: Grupo de Química Cuántica y Teórica de la Universidad de Cartagena, Facultad de Ciencias, Programa de Química, Cartagena de Indias, Colombia. almorales@utalca.cl.|FONDECYT Postdoctoral Project N0 3150035, Universidad de Talca, Talca, Chile. almorales@utalca.cl.
authors.forename: Alejandro
authors.initials: A
authors.lastname: Morales-Bayuelo
keywords: 3D-QSAR; Chemical reactivity descriptors; Comparative molecular similarity field analysis (CoMFA); Density functional theory (DFT); Molecular quantum similarity (MQS)