title: The first detection and full-length genome sequence of porcine deltacoronavirus isolated in Lao PDR.
abstract: Porcine deltacoronavirus (PDCoV) has been reported in many countries, including Hong Kong, the United States, South Korea, China and Thailand. In January 2016, clinical diarrhea similar to that of porcine epidemic diarrhea virus (PEDV) with a lower mortality rate was reported on a swine farm in Lao PDR. Intestine samples were collected from 3-day-old pigs with clinical diarrhea and assayed for the presence of swine enteric coronaviruses. The PCR results were positive for PDCoV but negative for PEDV and TGEV. A phylogenetic tree demonstrated that PDCoV from Lao PDR was grouped separately from PDCoV isolates from China and the USA, but was more closely related to the Chinese isolates than to the US isolates. The full-length genome sequence of the novel PDCoV isolate P1_16_BTL_0116 was determined.
authors.affiliation: Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
authors.forename: Athip
authors.initials: A
authors.lastname: Lorsirigool
authors.affiliation: Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
authors.forename: Kepalee
authors.initials: K
authors.lastname: Saeng-Chuto
authors.affiliation: Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
authors.forename: Gun
authors.initials: G
authors.lastname: Temeeyasen
authors.affiliation: Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
authors.forename: Adthakorn
authors.initials: A
authors.lastname: Madapong
authors.affiliation: Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
authors.forename: Thitima
authors.initials: T
authors.lastname: Tripipat
authors.affiliation: Department of Veterinary Pathology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
authors.forename: Matthew
authors.initials: M
authors.lastname: Wegner
authors.affiliation: Department of Pharmaceutics and Industrial Pharmacy, Faculty of Pharmaceutical Sciences, Chulalongkorn University, Bangkok, Thailand.
authors.forename: Angkana
authors.initials: A
authors.lastname: Tuntituvanont
authors.affiliation: Department of Veterinary Public Health, Faculty of Veterinary Sciences, Mahasarakham University, Maha Sarakham, Thailand.
authors.forename: Manakant
authors.initials: M
authors.lastname: Intrakamhaeng
authors.affiliation: Department of Veterinary Microbiology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand. dachrit@gmail.com.
authors.forename: Dachrit
authors.identifier: http://orcid.org/0000-0002-7691-6790
authors.initials: D
authors.lastname: Nilubol
mesh_terms: D000818:Animals; D016000:Cluster Analysis; D003332:Coronaviridae / Q000235:genetics* / Q000302:isolation & purification; D003967:Diarrhea / Q000662:veterinary / Q000821:virology; D016679:Genome, Viral; D007812:Laos; D010802:Phylogeny; D012367:RNA, Viral / Q000235:genetics*; D017422:Sequence Analysis, DNA; D017385:Sequence Homology; D013552:Swine; D013553:Swine Diseases / Q000821:virology
chemical_list: D012367:RNA, Viral