title: The San1 Ubiquitin Ligase Functions Preferentially with Ubiquitin-conjugating Enzyme Ubc1 during Protein Quality Control.
abstract: Protein quality control (PQC) is a critical process wherein misfolded or damaged proteins are cleared from the cell to maintain protein homeostasis. In eukaryotic cells, the removal of misfolded proteins is primarily accomplished by the ubiquitin-proteasome system. In the ubiquitin-proteasome system, ubiquitin-conjugating enzymes and ubiquitin ligases append polyubiquitin chains onto misfolded protein substrates signaling for their degradation. The kinetics of protein ubiquitylation are paramount as a balance must be achieved between the rapid removal of misfolded proteins versus providing sufficient time for protein chaperones to attempt refolding. To uncover the molecular basis for how PQC substrate ubiquitylation rates are controlled, the reaction catalyzed by nuclear ubiquitin ligase San1 was reconstituted in vitro Our results demonstrate that San1 can function with two ubiquitin-conjugating enzymes, Cdc34 and Ubc1. Although Cdc34 and Ubc1 are both sufficient for promoting San1 activity, San1 functions preferentially with Ubc1, including when both Ubc1 and Cdc34 are present. Notably, a homogeneous peptide that mimics a misfolded PQC substrate was developed and enabled quantification of the kinetics of San1-catalyzed ubiquitylation reactions. We discuss how these results may have broad implications for the regulation of PQC-mediated protein degradation.
authors.affiliation: From the Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Nevada 89154 and.
authors.forename: Rebeca
authors.initials: R
authors.lastname: Ibarra
authors.affiliation: From the Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Nevada 89154 and.
authors.forename: Daniella
authors.initials: D
authors.lastname: Sandoval
authors.affiliation: the Department of Pharmacology, University of Washington, Seattle, Washington 98195.
authors.forename: Eric K
authors.initials: EK
authors.lastname: Fredrickson
authors.affiliation: the Department of Pharmacology, University of Washington, Seattle, Washington 98195.
authors.forename: Richard G
authors.initials: RG
authors.lastname: Gardner
authors.affiliation: From the Department of Chemistry and Biochemistry, University of Nevada, Las Vegas, Nevada 89154 and gary.kleiger@unlv.edu.
authors.forename: Gary
authors.initials: G
authors.lastname: Kleiger
mesh_terms: D006801:Humans; D046988:Proteasome Endopeptidase Complex / Q000235:genetics / Q000378:metabolism*; D059748:Proteolysis; D012441:Saccharomyces cerevisiae / Q000235:genetics / Q000378:metabolism*; D029701:Saccharomyces cerevisiae Proteins / Q000235:genetics / Q000378:metabolism*; D044763:Ubiquitin-Conjugating Enzymes / Q000235:genetics / Q000378:metabolism*; D044767:Ubiquitin-Protein Ligases / Q000235:genetics / Q000378:metabolism*; D054875:Ubiquitination / Q000502:physiology*
chemical_list: D029701:Saccharomyces cerevisiae Proteins; C577449:CDC34 protein, S cerevisiae; C066752:UBC1 protein, S cerevisiae; D044763:Ubiquitin-Conjugating Enzymes; C500396:SAN1 protein, S cerevisiae; D044767:Ubiquitin-Protein Ligases; D046988:Proteasome Endopeptidase Complex
keywords: E3 ubiquitin ligase; protein degradation; protein misfolding; ubiquitin; ubiquitin-conjugating enzyme (E2 enzyme)