title: Allosteric proteins as logarithmic sensors.
abstract: Many sensory systems, from vision and hearing in animals to signal transduction in cells, respond to fold changes in signal relative to background. Responding to fold change requires that the system senses signal on a logarithmic scale, responding identically to a change in signal level from 1 to 3, or from 10 to 30. It is an ongoing search in the field to understand the ways in which a logarithmic sensor can be implemented at the molecular level. In this work, we present evidence that logarithmic sensing can be implemented with a single protein, by means of allosteric regulation. Specifically, we find that mathematical models show that allosteric proteins can respond to stimuli on a logarithmic scale. Next, we present evidence from measurements in the literature that some allosteric proteins do operate in a parameter regime that permits logarithmic sensing. Finally, we present examples suggesting that allosteric proteins are indeed used in this capacity: allosteric proteins play a prominent role in systems where fold-change detection has been proposed. This finding suggests a role as logarithmic sensors for the many allosteric proteins across diverse biological processes.
authors.affiliation: Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA 91125;
authors.forename: Noah
authors.initials: N
authors.lastname: Olsman
authors.affiliation: Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125 goentoro@caltech.edu.
authors.forename: Lea
authors.initials: L
authors.lastname: Goentoro
mesh_terms: D000465:Algorithms; D000494:Allosteric Regulation; D000818:Animals; D025461:Feedback, Physiological; D006801:Humans; D008962:Models, Theoretical; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000378:metabolism; D015398:Signal Transduction
chemical_list: D011506:Proteins
keywords: allosteric regulation; fold-change detection; logarithmic sensing