title: An IF-FISH Approach for Covisualization of Gene Loci and Nuclear Architecture in Fission Yeast.
abstract: Recent genomic studies have revealed that chromosomal structures are formed by a hierarchy of organizing processes ranging from gene associations, including interactions among enhancers and promoters, to topologically associating domain formations. Gene associations identified by these studies can be characterized by microscopic analyses. Fission yeast is a model organism, in which gene associations have been broadly mapped across the genome, although many of those associations have not been further examined by cell biological approaches. To address the technically challenging process of the visualization of associating gene loci in the fission yeast nuclei, we provide, in detail, an IF-FISH procedure that allows for covisualizing both gene loci and nuclear structural markers such as the nuclear membrane and nucleolus.
authors.affiliation: The Wistar Institute, Philadelphia, PA, United States.
authors.forename: K-D
authors.initials: KD
authors.lastname: Kim
authors.affiliation: The Wistar Institute, Philadelphia, PA, United States.
authors.forename: O
authors.initials: O
authors.lastname: Iwasaki
authors.affiliation: The Wistar Institute, Philadelphia, PA, United States. Electronic address: noma@wistar.org.
authors.forename: K
authors.initials: K
authors.lastname: Noma
mesh_terms: D002503:Centromere / Q000235:genetics / Q000648:ultrastructure; D015825:Chromosomes, Fungal / Q000235:genetics / Q000648:ultrastructure; D005455:Fluorescent Antibody Technique / Q000379:methods*; D056426:Genetic Loci; D016681:Genome, Fungal; D017404:In Situ Hybridization, Fluorescence / Q000379:methods*; D012568:Schizosaccharomyces / Q000166:cytology / Q000235:genetics* / Q000648:ultrastructure*
keywords: FISH; Fission yeast; Gene positioning; Genome organization; IF; Nuclear architecture; Nuclear membrane; Nucleolus