title: Genetic selection pressure in TLR9 gene may enforce risk for SLE in Indian Tamils.
abstract: Objectives Lupus is a classical systemic autoimmune disease with genetics as one of the well known causative factors for the disease pathogenesis. Toll-like receptors are the major pattern recognition receptors associated with innate immunity and also act as an interface with the adaptive immunity. Genetic polymorphisms in genes encoding TLRs were implicated in the development of infections, malignancies and autoimmune diseases. TLR9 is a member of TLR family, and recognizes the CpG DNA motifs of pathogens. Though the incidence rate of lupus in Asians was reported to be low (30 - 50/100,000 population), poor disease prognosis due to higher incidence of renal complications and aggressive disease worsens the scenario. The ability of TLR9 to detect and elicit an immune response against double-stranded DNA makes TLR9 a relevant factor to be tested for its association with the clinical and serological phenotypes of lupus. However, lack of relevant genetic data on normative frequencies of the TLR9 (rs187084) polymorphism may serve as a constraint to derive the sample size to conduct case control association studies. Hence this study was conducted to establish the normative frequency of TLR9 (rs187084) polymorphism in Indian Tamils. Materials and methods The TLR9 (rs187084) polymorphism was screened in South Indian Tamils ( n = 208) by PCR-RFLP. Results and discussion We observed a higher occurrence of the mutant allele (65%) in South Indian Tamils. No gender disparity with respect to the mutant allele frequency was observed. The higher incidence of mutant allele in both genders suggests that this population had undergone a genetic selection pressure as an evolutionary genetic measure to withstand the prevailing endemic infections like TB and malaria. Though the enhanced expression of TLR9 was protective against infections, it may also influence the development of autoimmune diseases. Conclusion The higher incidence of theTLR9 (rs187084) over-expression mutation in Indian Tamils is suggestive of a genetic adaptation or selection pressure to withstand the prevailing endemic infectious and parasitic diseases. However, this genetic adaptation poses a greater risk to develop autoimmune diseases like SLE etc through complex gene environment interactions. The normative frequency of the TLR9 (rs187084) polymorphism established in our population could now be used to define the sample size for future case control studies.
authors.affiliation: 1 Department of Genetic Engineering, SRM University, Kattankulathur, Chennai, India.
authors.forename: J H
authors.initials: JH
authors.lastname: Yusuf
authors.affiliation: 2 Department of Dermatology, Aarupadai Veedu Medical College, Pondicherry, India.
authors.forename: D
authors.initials: D
authors.lastname: Kaliyaperumal
authors.affiliation: 1 Department of Genetic Engineering, SRM University, Kattankulathur, Chennai, India.
authors.forename: M
authors.initials: M
authors.lastname: Jayaraman
authors.affiliation: 3 Department of Biomedical Sciences, Sri Ramachandra University, Porur, India.
authors.forename: G
authors.initials: G
authors.lastname: Ramanathan
authors.affiliation: 1 Department of Genetic Engineering, SRM University, Kattankulathur, Chennai, India.
authors.forename: P
authors.initials: P
authors.lastname: Devaraju
mesh_terms: D000328:Adult; D044466:Asian People / Q000235:genetics*; D016022:Case-Control Studies; D005260:Female; D005787:Gene Frequency; D020022:Genetic Predisposition to Disease; D006801:Humans; D007194:India; D008180:Lupus Erythematosus, Systemic / Q000235:genetics*; D008297:Male; D008875:Middle Aged; D009154:Mutation; D020641:Polymorphism, Single Nucleotide; D012307:Risk Factors; D012641:Selection, Genetic; D051217:Toll-Like Receptor 9 / Q000235:genetics*; D055815:Young Adult
chemical_list: C495371:TLR9 protein, human; D051217:Toll-Like Receptor 9
keywords: Indian; SNP; TLR9; autoimmune diseases; genetic selection pressure; selection pressure