title: Napoleon Is in Equilibrium.
abstract: It has been said that the cell is the test tube of the twenty-first century. If so, the theoretical tools needed to quantitatively and predictively describe what goes on in such test tubes lag sorely behind the stunning experimental advances in biology seen in the decades since the molecular biology revolution began. Perhaps surprisingly, one of the theoretical tools that has been used with great success on problems ranging from how cells communicate with their environment and each other to the nature of the organization of proteins and lipids within the cell membrane is statistical mechanics. A knee-jerk reaction to the use of statistical mechanics in the description of cellular processes is that living organisms are so far from equilibrium that one has no business even thinking about it. But such reactions are probably too hasty given that there are many regimes in which, because of a separation of timescales, for example, such an approach can be a useful first step. In this article, we explore the power of statistical mechanical thinking in the biological setting, with special emphasis on cell signaling and regulation. We show how such models are used to make predictions and describe some recent experiments designed to test them. We also consider the limits of such models based on the relative timescales of the processes of interest.
authors.affiliation: Department of Applied Physics and Division of Biology, California Institute of Technology, Pasadena, California 91125; phillips@pboc.caltech.edu; Laboratoire de Physico-Chimie Théorique, CNRS/UMR 7083-ESPCI, 75231 Paris Cedex 05, France.
authors.forename: Rob
authors.initials: R
authors.lastname: Phillips
keywords: MWC model; allostery; biophysics; gene regulation; transcription