title: Molecular Dynamics Simulations of G Protein-Coupled Receptors.
abstract: G protein-coupled receptors (GPCRs) constitute the largest family of membrane-bound receptors with more than 800 members encoded by 351 genes in humans. It has been estimated that more than 50 % of clinically available drugs act on GPCRs, with an amount of 400, 50 and 25 druggable proteins for the class A, B and C, respectively. Furthermore, Class A GPCRs with approximately 25 % of marketed small drugs represent the most attractive pharmaceutical class. The recent availability of high-resolution 3-dimensional structures of some GPCRs supports the notion that GPCRs are dynamically versatile, and their functions can be modulated by several factors. In this scenario, molecular dynamics (MD) simulations techniques appear to be crucial when studying GPCR flexibility associated to functioning and ligand recognition. A general overview of biased and unbiased MD techniques is here presented with special emphasis on the recent results obtained in the GPCRs field.
authors.affiliation: Dipartimento Farmaceutico, Universitdegli Studi di Parma, Via G.P. Usberti 27/A, 43100 Parma, Italy phone: +390521905055.
authors.forename: Agostino
authors.initials: A
authors.lastname: Bruno
authors.affiliation: Dipartimento Farmaceutico, Universitdegli Studi di Parma, Via G.P. Usberti 27/A, 43100 Parma, Italy phone: +390521905055. gabriele.costantino@unipr.it.
authors.forename: Gabriele
authors.initials: G
authors.lastname: Costantino
keywords: Conformation landscape; Flexibility; GPCRs; Molecular dynamics simulations