title: Biomedical Big Data Training Collaborative (BBDTC): An effort to bridge the talent gap in biomedical science and research.
abstract: The BBDTC (https://biobigdata.ucsd.edu) is a community-oriented platform to encourage high-quality knowledge dissemination with the aim of growing a well-informed biomedical big data community through collaborative efforts on training and education. The BBDTC collaborative is an e-learning platform that supports the biomedical community to access, develop and deploy open training materials. The BBDTC supports Big Data skill training for biomedical scientists at all levels, and from varied backgrounds. The natural hierarchy of courses allows them to be broken into and handled asmodules. Modules can be reused in the context of multiple courses and reshuffled, producing a new and different, dynamic course called aplaylist. Users may create playlists to suit their learning requirements and share it with individual users or the wider public. BBDTC leverages the maturity and design of the HUBzero content-management platform for delivering educational content. To facilitate the migration of existing content, the BBDTC supports importing and exporting course material from the edX platform. Migration tools will be extended in the future to support other platforms. Hands-on training software packages, i.e.,toolboxes, are supported through Amazon EC2 and Virtualbox virtualization technologies, and they are available as: (i) downloadable lightweight Virtualbox Images providing a standardized software tool environment with software packages and test data on their personal machines, and (ii) remotely accessible Amazon EC2 Virtual Machines for accessing biomedical big data tools and scalable big data experiments. At the moment, the BBDTC site contains three open Biomedical big data training courses with lecture contents, videos and hands-on training utilizing VM toolboxes, covering diverse topics. The courses have enhanced the hands-on learning environment by providing structured content that users can use at their own pace. A four course biomedical big data series is planned for development in 2016.
authors.affiliation: San Diego Supercomputer Center, University of California, San Diego, USA.
authors.forename: Shweta
authors.initials: S
authors.lastname: Purawat
authors.affiliation: San Diego Supercomputer Center, University of California, San Diego, USA.
authors.forename: Charles
authors.initials: C
authors.lastname: Cowart
authors.affiliation: Department of Chemistry and Biochemistry, University of California, San Diego, USA.
authors.forename: Rommie E
authors.initials: RE
authors.lastname: Amaro
authors.affiliation: San Diego Supercomputer Center, University of California, San Diego, USA.
authors.forename: Ilkay
authors.initials: I
authors.lastname: Altintas
keywords: big data; biomedical; collaborative; e-learning; education; toolbox