title: regionReport: Interactive reports for region-level and feature-level genomic analyses.
abstract: regionReport is an R package for generating detailed interactive reports from region-level genomic analyses as well as feature-level RNA-seq. The report includes quality-control checks, an overview of the results, an interactive table of the genomic regions or features of interest and reproducibility information. regionReport provides specialised reports for exploring DESeq2, edgeR, or derfinder differential expression analyses results. regionReport is also flexible and can easily be expanded with report templates for other analysis pipelines.
authors.affiliation: Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, 21205, USA; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, Maryland, 21205, USA; Center for Computational Biology, Johns Hopkins University, Baltimore, Maryland, 21205, USA.
authors.forename: Leonardo
authors.initials: L
authors.lastname: Collado-Torres
authors.affiliation: Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, 21205, USA; Lieber Institute for Brain Development, Johns Hopkins Medical Campus, Baltimore, Maryland, 21205, USA; Center for Computational Biology, Johns Hopkins University, Baltimore, Maryland, 21205, USA; Department of Mental Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, 21205, USA.
authors.forename: Andrew E
authors.initials: AE
authors.lastname: Jaffe
authors.affiliation: Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, 21205, USA; Center for Computational Biology, Johns Hopkins University, Baltimore, Maryland, 21205, USA.
authors.forename: Jeffrey T
authors.initials: JT
authors.lastname: Leek
keywords: ChIP-seq; Genomics; Interactive; RNA-seq; Report; Reproducibility; Sequencing; Software