title: Modeling Mercury in Proteins.
abstract: Mercury (Hg) is a naturally occurring element that is released into the biosphere both by natural processes and anthropogenic activities. Although its reduced, elemental form Hg(0) is relatively nontoxic, other forms such as Hg(2+) and, in particular, its methylated form, methylmercury, are toxic, with deleterious effects on both ecosystems and humans. Microorganisms play important roles in the transformation of mercury in the environment. Inorganic Hg(2+) can be methylated by certain bacteria and archaea to form methylmercury. Conversely, bacteria also demethylate methylmercury and reduce Hg(2+) to relatively inert Hg(0). Transformations and toxicity occur as a result of mercury interacting with various proteins. Clearly, then, understanding the toxic effects of mercury and its cycling in the environment requires characterization of these interactions. Computational approaches are ideally suited to studies of mercury in proteins because they can provide a detailed molecular picture and circumvent issues associated with toxicity. Here, we describe computational methods for investigating and characterizing how mercury binds to proteins, how inter- and intraprotein transfer of mercury is orchestrated in biological systems, and how chemical reactions in proteins transform the metal. We describe quantum chemical analyses of aqueous Hg(II), which reveal critical factors that determine ligand-binding propensities. We then provide a perspective on how we used chemical reasoning to discover how microorganisms methylate mercury. We also highlight our combined computational and experimental studies of the proteins and enzymes of the mer operon, a suite of genes that confer mercury resistance in many bacteria. Lastly, we place work on mercury in proteins in the context of what is needed for a comprehensive multiscale model of environmental mercury cycling.
authors: Oak Ridge National Laboratory, Oak Ridge, TN, United States; University of Tennessee, Knoxville, TN, United States. Electronic address: parksjm@ornl.gov.
authors: J M
authors: JM
authors: Parks
authors: Oak Ridge National Laboratory, Oak Ridge, TN, United States; University of Tennessee, Knoxville, TN, United States. Electronic address: smithjc@ornl.gov.
authors: J C
authors: JC
authors: Smith
mesh_terms: D001419:Bacteria / Q000737:chemistry / Q000378:metabolism; D001426:Bacterial Proteins / Q000737:chemistry* / Q000378:metabolism; D027682:Cation Transport Proteins / Q000737:chemistry* / Q000378:metabolism; D004268:DNA-Binding Proteins / Q000737:chemistry* / Q000378:metabolism; D007700:Kinetics; D008190:Lyases / Q000737:chemistry* / Q000378:metabolism; D008628:Mercury / Q000737:chemistry* / Q000378:metabolism; D008745:Methylation; D008767:Methylmercury Compounds / Q000737:chemistry / Q000378:metabolism; D056004:Molecular Dynamics Simulation; D009876:Operon; D010084:Oxidation-Reduction; D010088:Oxidoreductases / Q000737:chemistry* / Q000378:metabolism; D011485:Protein Binding; D011506:Proteins / Q000737:chemistry* / Q000378:metabolism; D011789:Quantum Theory; D013816:Thermodynamics; D014867:Water / Q000737:chemistry
chemical_list: D001426:Bacterial Proteins; D027682:Cation Transport Proteins; D004268:DNA-Binding Proteins; C086060:MerP protein, Bacteria; C051124:MerR protein, Bacteria; D008767:Methylmercury Compounds; D011506:Proteins; C094115:mercury transport protein, bacterial; D014867:Water; C072715:merC protein, Acidithiobacillus ferrooxidans; D010088:Oxidoreductases; C021551:mercuric reductase; D008190:Lyases; C097247:MerB protein, Bacteria; D008628:Mercury
keywords: Metal-ligand binding; Methylmercury; Molecular dynamics; Quantum chemistry; mer operon