title: Weighted gene co-expression based biomarker discovery for psoriasis detection.
abstract: Psoriasis is a chronic inflammatory disease of the skin with an unknown aetiology. The disease manifests itself as red and silvery scaly plaques distributed over the scalp, lower back and extensor aspects of the limbs. After receiving scant consideration for quite a few years, psoriasis has now become a prominent focus for new drug development. A group of closely connected and differentially co-expressed genes may act in a network and may serve as molecular signatures for an underlying phenotype. A weighted gene coexpression network analysis (WGCNA), a system biology approach has been utilized for identification of new molecular targets for psoriasis. Gene coexpression relationships were investigated in 58 psoriatic lesional samples resulting in five gene modules, clustered based on the gene coexpression patterns. The coexpression pattern was validated using three psoriatic datasets. 10 highly connected and informative genes from each module was selected and termed as psoriasis specific hub signatures. A random forest based binary classifier built using the expression profiles of signature genes robustly distinguished psoriatic samples from the normal samples in the validation set with an accuracy of 0.95 to 1. These signature genes may serve as potential candidates for biomarker discovery leading to new therapeutic targets. WGCNA, the network based approach has provided an alternative path to mine out key controllers and drivers of psoriasis. The study principle from the current work can be extended to other pathological conditions.
authors: Department of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology University, India.
authors: Sudharsana
authors: S
authors: Sundarrajan
authors: Department of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology University, India. Electronic address: mohanapriyaa@vit.ac.in.
authors: Mohanapriya
authors: M
authors: Arumugam
mesh_terms: D015415:Biomarkers / Q000378:metabolism; D030561:Databases, Nucleic Acid; D005260:Female; D005786:Gene Expression Regulation; D053263:Gene Regulatory Networks; D006801:Humans; D008297:Male; D008954:Models, Biological; D011565:Psoriasis / Q000175:diagnosis / Q000235:genetics / Q000378:metabolism; D012867:Skin / Q000378:metabolism*
chemical_list: D015415:Biomarkers
keywords: Biomarker; Classifier; Coexpression; Psoriasis; Random forest; System biology; WGCNA