title: The transmission process: A combinatorial stochastic process for the evolution of transmission trees over networks.
abstract: We derive a combinatorial stochastic process for the evolution of the transmission tree over the infected vertices of a host contact network in a susceptible-infected (SI) model of an epidemic. Models of transmission trees are crucial to understanding the evolution of pathogen populations. We provide an explicit description of the transmission process on the product state space of (rooted planar ranked labelled) binary transmission trees and labelled host contact networks with SI-tags as a discrete-state continuous-time Markov chain. We give the exact probability of any transmission tree when the host contact network is a complete, star or path network - three illustrative examples. We then develop a biparametric Beta-splitting model that directly generates transmission trees with exact probabilities as a function of the model parameters, but without explicitly modelling the underlying contact network, and show that for specific values of the parameters we can recover the exact probabilities for our three example networks through the Markov chain construction that explicitly models the underlying contact network. We use the maximum likelihood estimator (MLE) to consistently infer the two parameters driving the transmission process based on observations of the transmission trees and use the exact MLE to characterize equivalence classes over the space of contact networks with a single initial infection. An exploratory simulation study of the MLEs from transmission trees sampled from three other deterministic and four random families of classical contact networks is conducted to shed light on the relation between the MLEs of these families with some implications for statistical inference along with pointers to further extensions of our models. The insights developed here are also applicable to the simplest models of "meme" evolution in online social media networks through transmission events that can be distilled from observable actions such as "likes", "mentions", "retweets" and "+1s" along with any concomitant comments.
authors: Laboratory for Mathematical Statistical Experiments, Christchurch Centre and Biomathematics Research Centre, School of Mathematics and Statistics, University of Canterbury, Private Bag 4800, Christchurch 8041, New Zealand. Electronic address: raazesh.sainudiin@gmail.com.
authors: Raazesh
authors: R
authors: Sainudiin
authors: Computational Evolution Group and Department of Computer Science, University of Auckland, Private Bag 92019, Auckland 1142, New Zealand. Electronic address: david.welch@auckland.ac.nz.
authors: David
authors: D
authors: Welch
mesh_terms: D000818:Animals; D005075:Biological Evolution; D003141:Communicable Diseases / Q000453:epidemiology* / Q000635:transmission*; D054884:Host-Pathogen Interactions / Q000502:physiology*; D006801:Humans; D008954:Models, Biological; D013269:Stochastic Processes
keywords: Contact network; Meme evolution; Non-parametric combinatorial stochastic process; Parametric Beta-splitting model; Random graph models; Rooted ranked planar binary tree; Susceptible–infected epidemic model