title: Development and Diagnostic Evaluation of Loop-Mediated Isothermal Amplification Using a New Gene Target for Rapid Detection of Helicobacter pylori.
abstract: BACKGROUND
  Helicobacter pylori cause chronic gastritis and subsequent diseases like gastric and duodenal ulcers and gastric adenocarcinoma. Current methods for detecting H. pylori have several disadvantages and it is of utmost importance to develop a simple, quick, accurate, and cost-effective diagnostic test.
  
  
  OBJECTIVE
  The aim of this study was to set up and evaluate a diagnostic value of loop- mediated isothermal amplification (LAMP) for detecting H. pylori.
  
  
  METHODS
  The analytical sensitivity values (limit of detection) of LAMP and polymerase chain reaction (PCR) were determined using serial dilutions of H. pylori DNA. Analytical specificity of the methods using new designed primers targeted ureC gene was also determined.
  
  
  RESULTS
  The detection limits of the LAMP and PCR assay were similar and were 10 fg of pure DNA of H. pylori, which is equal to 6 copy numbers of H. pylori genome. Analytical specificity of the tests was 100% because the tests were positive only with H. pylori DNA.
  
  
  CONCLUSIONS
  The analytical sensitivity of LAMP and PCR methods, using the designed primers, was 8 times more than any other reported methods. The designed methods are specific and sensitive for detection of H. pylori in different clinical and environmental samples.
authors.affiliation: Department of Microbiology, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, IR Iran.
authors.forename: Somaye
authors.initials: S
authors.lastname: Bakhtiari
authors.affiliation: Department of Microbiology, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, IR Iran.
authors.forename: Amirhooshang
authors.initials: A
authors.lastname: Alvandi
authors.affiliation: Department of Microbiology, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, IR Iran.
authors.forename: Hamid
authors.initials: H
authors.lastname: Pajavand
authors.affiliation: Imam Khomeini Hospital, Kermanshah University of Medical Sciences, Kermanshah, IR Iran.
authors.forename: Jafar
authors.initials: J
authors.lastname: Navabi
authors.affiliation: Department of Biostatistics and Epidemiology, School of Hygiene, Kermanshah University of Medical Sciences, Kermanshah, IR Iran.
authors.forename: Farid
authors.initials: F
authors.lastname: Najafi
authors.affiliation: Department of Microbiology, School of Medicine, Kermanshah University of Medical Sciences, Kermanshah, IR Iran.
authors.forename: Ramin
authors.initials: R
authors.lastname: Abiri
keywords: Analytical Specificity; Detection Limit; Helicobacter pylori; Loop-Mediated Isothermal Amplification