title: Minimum information required for a DMET experiment reporting.
abstract: To provide pharmacogenomics reporting guidelines, the information and tools required for reporting to public omic databases.
  
  
  
  For effective DMET data interpretation, sharing, interoperability, reproducibility and reporting, we propose the Minimum Information required for a DMET Experiment (MIDE) reporting.
  
  
  
  MIDE provides reporting guidelines and describes the information required for reporting, data storage and data sharing in the form of XML.
  
  
  
  The MIDE guidelines will benefit the scientific community with pharmacogenomics experiments, including reporting pharmacogenomics data from other technology platforms, with the tools that will ease and automate the generation of such reports using the standardized MIDE XML schema, facilitating the sharing, dissemination, reanalysis of datasets through accessible and transparent pharmacogenomics data reporting.
authors.affiliation: Centre for Proteomic & Genomic Research, Cape Town, South Africa.
authors.forename: Judit
authors.initials: J
authors.lastname: Kumuthini
authors.affiliation: Centre for Proteomic & Genomic Research, Cape Town, South Africa.
authors.forename: Mamana
authors.initials: M
authors.lastname: Mbiyavanga
authors.affiliation: Centre for Proteomic & Genomic Research, Cape Town, South Africa.|Computational Biology Group, Institute for Infectious Diseases & Molecular Medicine, University of Cape Town, South Africa.
authors.forename: Emile R
authors.initials: ER
authors.lastname: Chimusa
authors.affiliation: Division of Biomedical Statistics & Informatics, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.
authors.forename: Jyotishman
authors.initials: J
authors.lastname: Pathak
authors.affiliation: Institute of Biotechnology, University of Helsinki, Helsinki, Finland.
authors.forename: Panu
authors.initials: P
authors.lastname: Somervuo
authors.affiliation: Department of Clinical Chemistry, Erasmus University Medical Center Rotterdam, Room Na-415, Wytemaweg 80, 3015CN Rotterdam, The Netherlands.
authors.forename: Ron Hn
authors.initials: RH
authors.lastname: Van Schaik
authors.affiliation: Pharmacogenetics Laboratory, Institute of Biochemistry, Faculty of Medicine, University of Ljubljana, Vrazov trg 2, SI-1000 Ljubljana, Slovenia.
authors.forename: Vita
authors.initials: V
authors.lastname: Dolzan
authors.affiliation: Department of Bioinformatics, Faculty of Medicine & Health Sciences, Erasmus University Medical Center, Rotterdam, The Netherlands.|Department of Physiology & Biochemistry, Faculty of Medicine and Surgery, University of Malta, Malta.
authors.forename: Clint
authors.initials: C
authors.lastname: Mizzi
authors.affiliation: UCT/SA MRC Human Genetics Research Unit, Division of Human Genetics, Institute for Infectious Diseases & Molecular Medicine, Division of Human Genetics, University of Cape Town, South Africa.
authors.forename: Kusha
authors.initials: K
authors.lastname: Kalideen
authors.affiliation: UCT/SA MRC Human Genetics Research Unit, Division of Human Genetics, Institute for Infectious Diseases & Molecular Medicine, Division of Human Genetics, University of Cape Town, South Africa.
authors.forename: Raj S
authors.initials: RS
authors.lastname: Ramesar
authors.affiliation: Department of Biology & Medical Genetics, Charles University Prague & 2nd Faculty of Medicine, Prague, Czechia.
authors.forename: Milan
authors.initials: M
authors.lastname: Macek
authors.affiliation: Department of Bioinformatics, Faculty of Medicine & Health Sciences, Erasmus University Medical Center, Rotterdam, The Netherlands.|Department of Pharmacy, School of Health Sciences, University of Patras, Patras, Greece.
authors.forename: George P
authors.initials: GP
authors.lastname: Patrinos
authors.affiliation: Laboratory of Pharmacogenomics, Section of Neuroscience & Clinical Pharmacology, Department of Biomedical Sciences, University of Cagliari, sp 8 Sestu-Monserrato, Km 0.700, 09042 Cagliari, Italy.
authors.forename: Alessio
authors.initials: A
authors.lastname: Squassina
mesh_terms: D003627:Data Interpretation, Statistical; D006801:Humans; D033181:Information Dissemination; D010597:Pharmacogenetics; D012107:Research Design
keywords: DMET; bioinformatics; minimum information requirement guidelines; personalized genomics; personalized medicine; pharmacogenomics; standardization