title: A spectral element method with adaptive segmentation for accurately simulating extracellular electrical stimulation of neurons.
abstract: The capacity to quickly and accurately simulate extracellular stimulation of neurons is essential to the design of next-generation neural prostheses. Existing platforms for simulating neurons are largely based on finite-difference techniques; due to the complex geometries involved, the more powerful spectral or differential quadrature techniques cannot be applied directly. This paper presents a mathematical basis for the application of a spectral element method to the problem of simulating the extracellular stimulation of retinal neurons, which is readily extensible to neural fibers of any kind. The activating function formalism is extended to arbitrary neuron geometries, and a segmentation method to guarantee an appropriate choice of collocation points is presented. Differential quadrature may then be applied to efficiently solve the resulting cable equations. The capacity for this model to simulate action potentials propagating through branching structures and to predict minimum extracellular stimulation thresholds for individual neurons is demonstrated. The presented model is validated against published values for extracellular stimulation threshold and conduction velocity for realistic physiological parameter values. This model suggests that convoluted axon geometries are more readily activated by extracellular stimulation than linear axon geometries, which may have ramifications for the design of neural prostheses.
authors.affiliation: Graduate School of Biomedical Engineering, University of New South Wales, Sydney, NSW, 2052, Australia. calvin.eiber@sydney.edu.au.|Save Sight Institute, University of Sydney, 8 Macquarie St, Sydney, NSW, 2000, Australia. calvin.eiber@sydney.edu.au.
authors.forename: Calvin D
authors.initials: CD
authors.lastname: Eiber
authors.affiliation: Graduate School of Biomedical Engineering, University of New South Wales, Sydney, NSW, 2052, Australia.
authors.forename: Socrates
authors.initials: S
authors.lastname: Dokos
authors.affiliation: Graduate School of Biomedical Engineering, University of New South Wales, Sydney, NSW, 2052, Australia.
authors.forename: Nigel H
authors.initials: NH
authors.lastname: Lovell
authors.affiliation: Graduate School of Biomedical Engineering, University of New South Wales, Sydney, NSW, 2052, Australia.
authors.forename: Gregg J
authors.initials: GJ
authors.lastname: Suaning
mesh_terms: D000200:Action Potentials / Q000502:physiology; D001369:Axons / Q000502:physiology; D003198:Computer Simulation; D004558:Electric Stimulation / Q000379:methods; D020342:Finite Element Analysis; D006801:Humans; D008959:Models, Neurological; D009412:Nerve Fibers / Q000502:physiology; D058117:Neural Prostheses; D009474:Neurons / Q000502:physiology*
keywords: Computer-assisted; Electric stimulation; Neural prostheses; Numerical analysis; Visual prosthesis