title: Comprehensive Analysis of the Membrane Phosphoproteome Regulated by Oligogalacturonides in Arabidopsis thaliana.
abstract: Early changes in the Arabidopsis thaliana membrane phosphoproteome in response to oligogalacturonides (OGs), a class of plant damage-associated molecular patterns (DAMPs), were analyzed by two complementary proteomic approaches. Differentially phosphorylated sites were determined through phosphopeptide enrichment followed by LC-MS/MS using label-free quantification; differentially phosphorylated proteins were identified by 2D-DIGE combined with phospho-specific fluorescent staining (phospho-DIGE). This large-scale phosphoproteome analysis of early OG-signaling enabled us to determine 100 regulated phosphosites using LC-MS/MS and 46 differential spots corresponding to 34 pdhosphoproteins using phospho-DIGE. Functional classification showed that the OG-responsive phosphoproteins include kinases, phosphatases and receptor-like kinases, heat shock proteins (HSPs), reactive oxygen species (ROS) scavenging enzymes, proteins related to cellular trafficking, transport, defense and signaling as well as novel candidates for a role in immunity, for which elicitor-induced phosphorylation changes have not been shown before. A comparison with previously identified elicitor-regulated phosphosites shows only a very limited overlap, uncovering the immune-related regulation of 70 phosphorylation sites and revealing novel potential players in the regulation of elicitor-dependent immunity.
authors.affiliation: Dipartimento di Biologia e Biotecnologie Charles Darwin, Istituto Pasteur - Fondazione Cenci Bolognetti, Sapienza University of Rome Rome, Italy.
authors.forename: Benedetta
authors.initials: B
authors.lastname: Mattei
authors.affiliation: Dipartimento di Biologia e Biotecnologie Charles Darwin, Istituto Pasteur - Fondazione Cenci Bolognetti, Sapienza University of Rome Rome, Italy.
authors.forename: Francesco
authors.initials: F
authors.lastname: Spinelli
authors.affiliation: Dipartimento di Biologia e Biotecnologie Charles Darwin, Istituto Pasteur - Fondazione Cenci Bolognetti, Sapienza University of Rome Rome, Italy.
authors.forename: Daniela
authors.initials: D
authors.lastname: Pontiggia
authors.affiliation: Dipartimento di Biologia e Biotecnologie Charles Darwin, Istituto Pasteur - Fondazione Cenci Bolognetti, Sapienza University of Rome Rome, Italy.
authors.forename: Giulia
authors.initials: G
authors.lastname: De Lorenzo
keywords: 2DE; Arabidopsis thaliana; DAMPs; LC-MS/MS; elicitors; immunity; oligogalacturonides; phosphoproteomics