title: 4'-Epi-DNA: A DNA Mimic Containing 4'-hydroxymethyl-α-l-Xylo-Thymidine with Compact Backbone like RNA.
abstract: Synthesis of C4'-epi-DNA containing 3'→ 5″ linkages is reported for the first time. Crystal structure study of the monomer indicated that though the dihedral angle O3'-C3'-C4'-C5″ in this case would be like in RNA, the sugar conformation would remain like that in DNA. The study of the effect of this backbone configuration in DNA with respect to its binding to cDNA and RNA is reported in this note.
authors.affiliation: a Organic Chemistry Division , CSIR-National Chemical Laboratory , Pune , India.
authors.forename: Seema
authors.initials: S
authors.lastname: Bagmare
authors.affiliation: b Center for Material Characterization , CSIR-National Chemical Laboratory , Pune , India.
authors.forename: Vedavati G
authors.initials: VG
authors.lastname: Puranik
authors.affiliation: a Organic Chemistry Division , CSIR-National Chemical Laboratory , Pune , India.
authors.forename: Moneesha
authors.initials: M
authors.lastname: Fernandes
authors.affiliation: a Organic Chemistry Division , CSIR-National Chemical Laboratory , Pune , India.
authors.forename: Vaijayanti A
authors.initials: VA
authors.lastname: Kumar
mesh_terms: D018360:Crystallography, X-Ray; D004247:DNA / Q000737:chemistry*; D008958:Models, Molecular; D018716:Molecular Mimicry; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D013936:Thymidine / Q000031:analogs & derivatives* / Q000737:chemistry*; D044366:Transition Temperature
chemical_list: D012313:RNA; D004247:DNA; D013936:Thymidine
keywords: 4′-hydroxymethyl nucleosides C4′-epi-DNA; Antisense Oligonucleotide