title: Incorporation of local structure into kriging models for the prediction of atomistic properties in the water decamer.
abstract: Machine learning algorithms have been demonstrated to predict atomistic properties approaching the accuracy of quantum chemical calculations at significantly less computational cost. Difficulties arise, however, when attempting to apply these techniques to large systems, or systems possessing excessive conformational freedom. In this article, the machine learning method kriging is applied to predict both the intra-atomic and interatomic energies, as well as the electrostatic multipole moments, of the atoms of a water molecule at the center of a 10 water molecule (decamer) cluster. Unlike previous work, where the properties of small water clusters were predicted using a molecular local frame, and where training set inputs (features) were based on atomic index, a variety of feature definitions and coordinate frames are considered here to increase prediction accuracy. It is shown that, for a water molecule at the center of a decamer, no single method of defining features or coordinate schemes is optimal for every property. However, explicitly accounting for the structure of the first solvation shell in the definition of the features of the kriging training set, and centring the coordinate frame on the atom-of-interest will, in general, return better predictions than models that apply the standard methods of feature definition, or a molecular coordinate frame. © 2016 The Authors. Journal of Computational Chemistry Published by Wiley Periodicals, Inc.
authors.affiliation: Manchester Institute of Biotechnology (MIB), 131 Princess Street, Manchester M1 7DN, Great Britain and School of Chemistry, University of Manchester, Oxford Road, Manchester, M13 9PL, Great Britain.
authors.forename: Stuart J
authors.initials: SJ
authors.lastname: Davie
authors.affiliation: Manchester Institute of Biotechnology (MIB), 131 Princess Street, Manchester M1 7DN, Great Britain and School of Chemistry, University of Manchester, Oxford Road, Manchester, M13 9PL, Great Britain.
authors.forename: Nicodemo
authors.initials: N
authors.lastname: Di Pasquale
authors.affiliation: Manchester Institute of Biotechnology (MIB), 131 Princess Street, Manchester M1 7DN, Great Britain and School of Chemistry, University of Manchester, Oxford Road, Manchester, M13 9PL, Great Britain. paul.popelier@manchester.ac.
authors.forename: Paul L A
authors.initials: PL
authors.lastname: Popelier
keywords: force field design; interacting quantum atoms; kriging; liquid water; machine learning; quantum chemical topology; quantum theory of atoms in molecules