title: omniClassifier: a Desktop Grid Computing System for Big Data Prediction Modeling.
abstract: Robust prediction models are important for numerous science, engineering, and biomedical applications. However, best-practice procedures for optimizing prediction models can be computationally complex, especially when choosing models from among hundreds or thousands of parameter choices. Computational complexity has further increased with the growth of data in these fields, concurrent with the era of "Big Data". Grid computing is a potential solution to the computational challenges of Big Data. Desktop grid computing, which uses idle CPU cycles of commodity desktop machines, coupled with commercial cloud computing resources can enable research labs to gain easier and more cost effective access to vast computing resources. We have developed omniClassifier, a multi-purpose prediction modeling application that provides researchers with a tool for conducting machine learning research within the guidelines of recommended best-practices. omniClassifier is implemented as a desktop grid computing system using the Berkeley Open Infrastructure for Network Computing (BOINC) middleware. In addition to describing implementation details, we use various gene expression datasets to demonstrate the potential scalability of omniClassifier for efficient and robust Big Data prediction modeling. A prototype of omniClassifier can be accessed at http://omniclassifier.bme.gatech.edu/.
authors.affiliation: Department of Biomedical, Engineering, Georgia Institute of, Technology and Emory University, Atlanta, GA, USA, 30332.
authors.forename: John H
authors.initials: JH
authors.lastname: Phan
authors.affiliation: Department of Biomedical, Engineering, Georgia Institute of, Technology and Emory University, Atlanta, GA, USA, 30332.
authors.forename: Sonal
authors.initials: S
authors.lastname: Kothari
authors.affiliation: Department of Biomedical, Engineering, Georgia Institute of, Technology and Emory University, Atlanta, GA, USA, 30332.
authors.forename: May D
authors.initials: MD
authors.lastname: Wang
keywords: Prediction modeling; big data; desktop grid computing; nested cross validation