title: Predictive biophysical modeling and understanding of the dynamics of mRNA translation and its evolution.
abstract: mRNA translation is the fundamental process of decoding the information encoded in mRNA molecules by the ribosome for the synthesis of proteins. The centrality of this process in various biomedical disciplines such as cell biology, evolution and biotechnology, encouraged the development of dozens of mathematical and computational models of translation in recent years. These models aimed at capturing various biophysical aspects of the process. The objective of this review is to survey these models, focusing on those based and/or validated on real large-scale genomic data. We consider aspects such as the complexity of the models, the biophysical aspects they regard and the predictions they may provide. Furthermore, we survey the central systems biology discoveries reported on their basis. This review demonstrates the fundamental advantages of employing computational biophysical translation models in general, and discusses the relative advantages of the different approaches and the challenges in the field.
authors: Department of Biomedical Engineering, the Engineering Faculty, Tel Aviv University, Tel-Aviv 69978, Israel.
authors: Hadas
authors: H
authors: Zur
authors: Department of Biomedical Engineering, the Engineering Faculty, Tel Aviv University, Tel-Aviv 69978, Israel tamirtul@post.tau.ac.il.|The Sagol School of Neuroscience, Tel Aviv University, Tel-Aviv 69978, Israel.
authors: Tamir
authors: T
authors: Tuller
mesh_terms: D000465:Algorithms; D000926:Anticodon; D005075:Biological Evolution; D003062:Codon; D008954:Models, Biological; D008958:Models, Molecular; D008968:Molecular Conformation; D014176:Protein Biosynthesis; D012333:RNA, Messenger / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D012343:RNA, Transfer / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D013329:Structure-Activity Relationship
chemical_list: D000926:Anticodon; D003062:Codon; D012333:RNA, Messenger; D012343:RNA, Transfer