title: Global transcriptome analysis of the heat shock response of the deep-sea bacterium Shewanella piezotolerans WP3.
abstract: For microorganisms, heat shock is a major stressful condition. Heat shock is characterized by sudden temperature increases that damage important protein structures and interfere with essential cellular functions. In this study, global gene expression patterns of the deep-sea bacterium Shewanella piezotolerans WP3 in response to heat shock were studied by DNA microarray analysis. Overall, 438, 573, and 627 genes were found to be differentially expressed after heat shock for 30, 60, and 90min, respectively. Functional classification of differentially transcribed genes was performed using the Clusters of Orthologous Groups of Proteins database. Additionally, 361 genes were identified as common differentially expressed genes. These genes may comprise the core genes responsible for coping with heat shock stress of WP3. Moreover, comparative analysis of gene expression pattern in WP3 and other bacteria indicated the presence of different adaptive strategies. These data represent the first transcriptome resource for the response of this deep-sea bacterium to high-temperature stress. This study contributes to the understanding of the global adaptation mechanisms of benthic bacteria toward environmental stresses.
authors: State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, PR China.
authors: Huahua
authors: H
authors: Jian
authors: Guangdong Provincial Key Laboratory of Marine Biology, Shantou University, Shantou, PR China.
authors: Shengkang
authors: S
authors: Li
authors: State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, PR China.
authors: Xiaoyuan
authors: X
authors: Feng
authors: State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, PR China; Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, Xiamen, PR China. Electronic address: xoxiang@sjtu.edu.cn.
authors: Xiang
authors: X
authors: Xiao
mesh_terms: D020869:Gene Expression Profiling; D015964:Gene Expression Regulation, Bacterial; D018869:Heat-Shock Response; D020411:Oligonucleotide Array Sequence Analysis; D020592:Shewanella / Q000235:genetics / Q000502:physiology*
keywords: Deep-sea bacterium; Heat shock; Microarray; Shewanella piezotolerans