Genomic resources for wild populations of the house mouse, Mus musculus and its close relative Mus spretus.
Wild populations of the house mouse (Mus musculus) represent the raw genetic material for the classical inbred strains in biomedical research and are a major model system for evolutionary biology. We provide whole genome sequencing data of individuals representing natural populations of M. m. domesticus (24 individuals from 3 populations), M. m. helgolandicus (3 individuals), M. m. musculus (22 individuals from 3 populations) and M. spretus (8 individuals from one population). We use a single pipeline to map and call variants for these individuals and also include 10 additional individuals of M. m. castaneus for which genomic data are publically available. In addition, RNAseq data were obtained from 10 tissues of up to eight adult individuals from each of the three M. m. domesticus populations for which genomic data were collected. Data and analyses are presented via tracks viewable in the UCSC or IGV genome browsers. We also provide information on available outbred stocks and instructions on how to keep them in the laboratory.
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Bettina
B
Harr
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Emre
E
Karakoc
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Rafik
http://orcid.org/0000-0001-8462-5291
R
Neme
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Meike
M
Teschke
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Christine
C
Pfeifle
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Željka
Ž
Pezer
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Hiba
H
Babiker
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Miriam
M
Linnenbrink
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Inka
I
Montero
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Rick
R
Scavetta
Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran 1417613151, Iran.
Mohammad Reza
MR
Abai
Laboratorio de Anatomía Animal, Departamento de Biología Animal, Facultad de Ciencias, Universidad de Vigo, 36200 Vigo, Spain.
Marta Puente
MP
Molins
Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute for Novel and Emerging Infectious Diseases, Südufer 10, 17493 Greifswald-Insel Riems, Germany.
Mathias
M
Schlegel
Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, Institute for Novel and Emerging Infectious Diseases, Südufer 10, 17493 Greifswald-Insel Riems, Germany.
Rainer G
RG
Ulrich
Cologne Center for Genomics (CCG), University of Cologne, Weyertal 115b, 50931 Cologne, Germany.|Institute of Human Genetics, Universitätsklinik Köln, Kerpener Str. 34, 50931 Köln, Germany.
Janine
J
Altmüller
Cologne Center for Genomics (CCG), University of Cologne, Weyertal 115b, 50931 Cologne, Germany.|Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Joseph-Stelzmann-Str. 26, 50931 Cologne, Germany.
Marek
M
Franitza
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Anna
A
Büntge
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Sven
S
Künzel
Max-Planck Institute for Evolutionary Biology, August-Thienemanstrasse 2, 24306 Plön, Germany.
Diethard
http://orcid.org/0000-0002-0460-5344
D
Tautz
D000818:Animals; D005075:Biological Evolution; D016678:Genome; D023281:Genomics; D051379:Mice