Interaction studies of human prion protein (HuPrP109-111: methionine-lysine-histidine) tripeptide model with transition metal cations.
In the present study, the coordination bonds between the Methionine-Lysine-Histidine (Ac-MKH-NHMe) tripeptide model associated with the fifth metal binding site, which triggers the β-sheet formation of human prion protein and the divalent metal cations such as Mn(2+), Cu(2+) and Zn(2+) were studied using B3LYP and M052X levels of theory with LANL2DZ basis set. For each transition divalent metal cation, three different coordination modes (4N, 3NO, and 2NSO) were analyzed. The present result reveals that overall structural parameters of MKH model tripeptide are altered due to the interaction of divalent metal cations. Among these three coordination modes, the 4N-M(2)(+) and 4N2O-Mn(2+) complexes are found to have the larger interaction energy, MIA and deformation energies. The triply deprotonated coordination mode of the Ac-MKH-NHMe tripeptide transfers more amount of charge to the divalent metal cations than the dually and singly deprotonated complexes. Furthermore, the atoms in molecules (AIM) topological analysis confirm that, the interaction between the metal cations Mn(2+), Cu(2+) and Zn(2+) and Ac-MKH-NHMe tripeptide are electrostatic dominant and the coordination modes with triply deprotonation states possess larger electron density at their BCP corresponding to their coordination bonds. The electrostatic potential difference maps of the most stable 4N-M(2+) (M(2+)=Cu(2+) and Zn(2+)) and 4N2O-Mn(2+) reveals that, as the ionic radii of the metal ion increases, the delocalization charges localized on the metal cations are found to be decreased. The Infra-red stretching frequencies of NH, CH, and CH2 groups of each coordination complexes are observed with shift in their stretching frequencies. From these observations we conclude that, the transition divalent metal cations binding in 4N coordination mode will induce more conformational changes of the Prion protein.
Department of Physics, Bharathiar University, Coimbatore 641 046, India.
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Pitchumani Violet Mary
Department of Physics, Bharathiar University, Coimbatore 641 046, India. Electronic address: rshankar@buc.edu.in.
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Shankar
Department of Medical Physics, Bharathiar University, Coimbatore 641 046, India.
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Vijayakumar
Department of Physics, Bharathiar University, Coimbatore 641 046, India.
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Kolandaivel
D002412:Cations; D004583:Electrons; D006801:Humans; D008670:Metals / Q000737:chemistry; D008958:Models, Molecular; D009842:Oligopeptides / Q000737:chemistry* / Q000378:metabolism*; D000072002:Prion Proteins / Q000737:chemistry* / Q000378:metabolism*; D011485:Protein Binding; D055672:Static Electricity; D013816:Thermodynamics; D028561:Transition Elements / Q000378:metabolism*; D014732:Vibration
D002412:Cations; D008670:Metals; D009842:Oligopeptides; D000072002:Prion Proteins; D028561:Transition Elements
Density functional theory; Human prion protein; Methionine-lysine-histidine; Protein misfolding; Transition divalent metal cations