title: Genetic Interactions between PEROXIN12 and Other Peroxisome-Associated Ubiquitination Components.
abstract: Most eukaryotic cells require peroxisomes, organelles housing fatty acid β-oxidation and other critical metabolic reactions. Peroxisomal matrix proteins carry peroxisome-targeting signals that are recognized by one of two receptors, PEX5 or PEX7, in the cytosol. After delivering the matrix proteins to the organelle, these receptors are removed from the peroxisomal membrane or matrix. Receptor retrotranslocation not only facilitates further rounds of matrix protein import but also prevents deleterious PEX5 retention in the membrane. Three peroxisome-associated ubiquitin-protein ligases in the Really Interesting New Gene (RING) family, PEX2, PEX10, and PEX12, facilitate PEX5 retrotranslocation. However, the detailed mechanism of receptor retrotranslocation remains unclear in plants. We identified an Arabidopsis (Arabidopsis thaliana) pex12 Glu-to-Lys missense allele that conferred severe peroxisomal defects, including impaired β-oxidation, inefficient matrix protein import, and decreased growth. We compared this pex12-1 mutant to other peroxisome-associated ubiquitination-related mutants and found that RING peroxin mutants displayed elevated PEX5 and PEX7 levels, supporting the involvement of RING peroxins in receptor ubiquitination in Arabidopsis. Also, we observed that disruption of any Arabidopsis RING peroxin led to decreased PEX10 levels, as seen in yeast and mammals. Peroxisomal defects were exacerbated in RING peroxin double mutants, suggesting distinct roles of individual RING peroxins. Finally, reducing function of the peroxisome-associated ubiquitin-conjugating enzyme PEX4 restored PEX10 levels and partially ameliorated the other molecular and physiological defects of the pex12-1 mutant. Future biochemical analyses will be needed to determine whether destabilization of the RING peroxin complex observed in pex12-1 stems from PEX4-dependent ubiquitination on the pex12-1 ectopic Lys residue.
authors.affiliation: Biochemistry and Cell Biology Program, Department of BioSciences, Rice University, Houston, Texas 77005 (Y.-T.K., W.A.F., M.J.V., B.B.).
authors.forename: Yun-Ting
authors.initials: YT
authors.lastname: Kao
authors.affiliation: Biochemistry and Cell Biology Program, Department of BioSciences, Rice University, Houston, Texas 77005 (Y.-T.K., W.A.F., M.J.V., B.B.).
authors.forename: Wendell A
authors.initials: WA
authors.lastname: Fleming
authors.affiliation: Biochemistry and Cell Biology Program, Department of BioSciences, Rice University, Houston, Texas 77005 (Y.-T.K., W.A.F., M.J.V., B.B.).
authors.forename: Meredith J
authors.initials: MJ
authors.lastname: Ventura
authors.affiliation: Biochemistry and Cell Biology Program, Department of BioSciences, Rice University, Houston, Texas 77005 (Y.-T.K., W.A.F., M.J.V., B.B.) bartel@rice.edu.
authors.forename: Bonnie
authors.identifier: 0000-0002-6367-346X
authors.initials: B
authors.lastname: Bartel
mesh_terms: D000595:Amino Acid Sequence; D017360:Arabidopsis; D029681:Arabidopsis Proteins / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D004843:Epistasis, Genetic; D008565:Membrane Proteins / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D008954:Models, Biological; D009154:Mutation / Q000235:genetics; D000074401:Peroxins; D020675:Peroxisomes / Q000378:metabolism*; D030821:Plants, Genetically Modified; D055550:Protein Stability; D018160:Receptors, Cytoplasmic and Nuclear / Q000378:metabolism; D036226:Seedlings / Q000378:metabolism; D044763:Ubiquitin-Conjugating Enzymes; D054875:Ubiquitination
chemical_list: D029681:Arabidopsis Proteins; D008565:Membrane Proteins; D000074401:Peroxins; D018160:Receptors, Cytoplasmic and Nuclear; C507147:peroxin 12 protein, Arabidopsis; C000607371:PEX4 protein, Arabidopsis; D044763:Ubiquitin-Conjugating Enzymes