title: Rhizospheric Bacterial Community of Endemic Rhododendron arboreum Sm. Ssp. delavayi along Eastern Himalayan Slope in Tawang.
abstract: Information on rhizosphere microbiome of endemic plants from high mountain ecosystems against those of cultivated plantations is inadequate. Comparative bacterial profiles of endemic medicinal plant Rhododendron arboreum Sm. subsp. delavayi rhizosphere pertaining to four altitudinal zonation Pankang Thang (PTSO), Nagula, Y-junction and Bum La (Indo-China border; in triplicates each) along cold adapted Eastern slope of Himalayan Tawang region, India is described here. Significant differences in DGGE profile between below ground bulk vs. rhizospheric community profile associated with the plant was identified. Tagged 16S amplicon sequencing from PTSO (3912 m) to Bum La (4509 m), revealed that soil pH, total nitrogen (TN), organic matter (OM) significantly influenced the underlying bacterial community structure at different altitudes. The relative abundance of Acidobacteria was inversely related to pH, as opposed to TN which was positively correlated to Acidobacteria and Proteobacteria abundance. TN was also the significant predictor for less abundant taxonomic groups Chloroflexi, Gemmatimonadetes, and Nitrospirae. Bum La soil harbored less bacterial diversity compared to other sites at lower altitudes. The most abundant phyla at 3% genetic difference were Acidobacteria, Actinobacteria, and Proteobacteria amongst others. Analysis of similarity indicated greater similarity within lower altitudinal than higher altitudinal group (ANOSIM, R = 0.287, p = 0.02). Constraining the ordination with the edaphic factor explained 83.13% of variation. Unique phylotypes of Bradyrhizobium and uncultured Rhizobiales were found in significant proportions at the four regions. With over 1% relative abundance Actinobacteria (42.6%), Acidobacteria (24.02%), Proteobacteria (16.00%), AD3 (9.23%), WPS-2 (5.1%), and Chloroflexi (1.48%) dominated the core microbiome.
authors.affiliation: Microbial Biotechnology Group, Biological Science and Technology Division, Council of Scientific and Industrial Research-North East Institute of Science and Technology Jorhat, India.
authors.forename: Rajal
authors.initials: R
authors.lastname: Debnath
authors.affiliation: Microbial Biotechnology Group, Biological Science and Technology Division, Council of Scientific and Industrial Research-North East Institute of Science and Technology Jorhat, India.
authors.forename: Archana
authors.initials: A
authors.lastname: Yadav
authors.affiliation: Molecular Glycobiotechnology Group, Discipline of Biochemistry, National University of Ireland Galway Galway, Ireland.
authors.forename: Vijai K
authors.initials: VK
authors.lastname: Gupta
authors.affiliation: Molecular Microbiology and Systematics Laboratory, Department of Biotechnology, Mizoram University Aizawl, India.
authors.forename: Bhim P
authors.initials: BP
authors.lastname: Singh
authors.affiliation: Department of Biotechnology, Gauhati University Guwahati, India.
authors.forename: Pratap J
authors.initials: PJ
authors.lastname: Handique
authors.affiliation: Microbial Biotechnology Group, Biological Science and Technology Division, Council of Scientific and Industrial Research-North East Institute of Science and Technology Jorhat, India.
authors.forename: Ratul
authors.initials: R
authors.lastname: Saikia
keywords: Acidobacteria; QIIME; Rhododendron arboreum Eastern Himalaya; UPARSE; bacterial diversity