title: Community Composition of Photosynthetic Picoeukaryotes in a Subtropical Coastal Ecosystem, with Particular Emphasis on Micromonas.
abstract: Photosynthetic picoeukaryotes (PPEs) are important constituents in picoplankton communities in many marine ecosystems. However, little is known about their community composition in the subtropical coastal waters of the Northwestern Pacific Ocean. In order to study their taxonomic composition, this study constructed 18S rRNA gene libraries using flow cytometric sorting during the warm season. The results show that, after diatoms, prasinophyte clones are numerically dominant. Within prasinophytes, Micromonas produced the most common sequences, and included clades II, III, IV, and VI. We are establishing the new Micromonas clade VI based on our phylogenetic analysis. Sequences of this clade have previously been retrieved from the South China Sea and Red Sea, indicating a worldwide distribution, but this is the first study to detect clade VI in the coastal waters of Taiwan. The TSA-FISH results indicated that Micromonas clade VI peaked in the summer (~4 × 102cells/ml), accounting for one-fifth of Micromonas abundance on average. Overall, Micromonas contributed half of Mamiellophyceae abundance, while Mamiellophyceae contributed 40% of PPE abundance. This study demonstrates the importance of Micromonas within the Mamiellophyceae in a subtropical coastal ecosystem.
authors.affiliation: Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, 20224, Taiwan.|Institute of Marine Biology, National Taiwan Ocean University, Keelung, 20224, Taiwan.
authors.forename: Yun-Chi
authors.initials: YC
authors.lastname: Lin
authors.affiliation: Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, 20224, Taiwan.
authors.forename: Chih-Ching
authors.initials: CC
authors.lastname: Chung
authors.affiliation: Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, 20224, Taiwan.
authors.forename: Liang-Yin
authors.initials: LY
authors.lastname: Chen
authors.affiliation: Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, 20224, Taiwan.
authors.forename: Gwo-Ching
authors.initials: GC
authors.lastname: Gong
authors.affiliation: Institute of Marine Biology, National Taiwan Ocean University, Keelung, 20224, Taiwan.
authors.forename: Chin-Yi
authors.initials: CY
authors.lastname: Huang
authors.affiliation: Institute of Marine Environment and Ecology, National Taiwan Ocean University, Keelung, 20224, Taiwan.|Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, 20224, Taiwan.
authors.forename: Kuo-Ping
authors.initials: KP
authors.lastname: Chiang
mesh_terms: D059001:Aquatic Organisms / Q000145:classification / Q000235:genetics; D001483:Base Sequence; D002452:Cell Count; D000460:Chlorophyta / Q000145:classification* / Q000235:genetics; D002965:Classification; D017377:Diatoms / Q000145:classification / Q000235:genetics; D017753:Ecosystem; D056890:Eukaryota / Q000145:classification* / Q000235:genetics; D015723:Gene Library; D017403:In Situ Hybridization; D008386:Marine Biology; D010140:Pacific Ocean; D010788:Photosynthesis; D010802:Phylogeny; D010933:Plankton / Q000145:classification / Q000235:genetics; D012337:RNA, Ribosomal, 18S / Q000235:genetics; D054712:Salinity; D012621:Seasons; D012623:Seawater; D013624:Taiwan; D013696:Temperature
chemical_list: D012337:RNA, Ribosomal, 18S
keywords: 18S rRNA gene; FISH; flow cytometric sorting; prasinophytes