title: Software-based measurement of thin filament lengths: an open-source GUI for Distributed Deconvolution analysis of fluorescence images.
abstract: The periodically arranged thin filaments within the striated myofibrils of skeletal and cardiac muscle have precisely regulated lengths, which can change in response to developmental adaptations, pathophysiological states, and genetic perturbations. We have developed a user-friendly, open-source ImageJ plugin that provides a graphical user interface (GUI) for super-resolution measurement of thin filament lengths by applying Distributed Deconvolution (DDecon) analysis to periodic line scans collected from fluorescence images. In the workflow presented here, we demonstrate thin filament length measurement using a phalloidin-stained cryosection of mouse skeletal muscle. The DDecon plugin is also capable of measuring distances of any periodically localized fluorescent signal from the Z- or M-line, as well as distances between successive Z- or M-lines, providing a broadly applicable tool for quantitative analysis of muscle cytoarchitecture. These functionalities can also be used to analyse periodic fluorescence signals in nonmuscle cells.
authors.affiliation: Department of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, California, U.S.A.
authors.forename: David S
authors.initials: DS
authors.lastname: Gokhin
authors.affiliation: Department of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, California, U.S.A.
authors.forename: Velia M
authors.initials: VM
authors.lastname: Fowler
mesh_terms: D008841:Actin Cytoskeleton / Q000648:ultrastructure*; D000818:Animals; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D051379:Mice; D018482:Muscle, Skeletal / Q000648:ultrastructure*; D061848:Optical Imaging / Q000379:methods*; D012984:Software
keywords: Line scan; myofibril; periodic repeat; sarcomere; striated muscle