Nucleolar Reorganization Upon Site-Specific Double-Strand Break Induction.
DNA damage response (DDR) in ribosomal genes and mechanisms of DNA repair in embryonic stem cells (ESCs) are less explored nuclear events. DDR in ESCs should be unique due to their high proliferation rate, expression of pluripotency factors, and specific chromatin signature. Given short population doubling time and fast progress through G1 phase, ESCs require a sustained production of rRNA, which leads to the formation of large and prominent nucleoli. Although transcription of rRNA in the nucleolus is relatively well understood, little is known about DDR in this nuclear compartment. Here, we directed formation of double-strand breaks in rRNA genes with I- PpoI endonuclease, and we studied nucleolar morphology, DDR, and chromatin modifications. We observed a pronounced formation of I- PpoI-induced nucleolar caps, positive on BRCA1, NBS1, MDC1, γH2AX, and UBF1 proteins. We showed interaction of nucleolar protein TCOF1 with HDAC1 and TCOF1 with CARM1 after DNA injury. Moreover, H3R17me2a modification mediated by CARM1 was found in I- PpoI-induced nucleolar caps. Finally, we report that heterochromatin protein 1 is not involved in DNA repair of nucleolar caps.
Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic (MF, AK, EB, SK).
Michal
M
Franek
Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic (MF, AK, EB, SK).
Alena
A
Kovaříková
Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic (MF, AK, EB, SK).
Eva
E
Bártová
Institute of Biophysics, Academy of Sciences of the Czech Republic, Brno, Czech Republic (MF, AK, EB, SK).
Stanislav
S
Kozubek
D000107:Acetylation; D000818:Animals; D001120:Arginine / Q000378:metabolism; D002460:Cell Line; D002466:Cell Nucleolus / Q000235:genetics* / Q000648:ultrastructure; D053903:DNA Breaks, Double-Stranded; D004260:DNA Repair; D053595:Embryonic Stem Cells / Q000378:metabolism / Q000648:ultrastructure; D020459:Genes, rRNA; D056284:Histone Deacetylase 1 / Q000378:metabolism; D006657:Histones / Q000378:metabolism; D047908:Intracellular Signaling Peptides and Proteins; D008745:Methylation; D051379:Mice; D009687:Nuclear Proteins / Q000378:metabolism; D010750:Phosphoproteins / Q000378:metabolism; D011484:Protein-Arginine N-Methyltransferases / Q000378:metabolism; D012335:RNA, Ribosomal / Q000235:genetics / Q000378:metabolism
D006657:Histones; D047908:Intracellular Signaling Peptides and Proteins; D009687:Nuclear Proteins; D010750:Phosphoproteins; D012335:RNA, Ribosomal; C491352:Tcof1 protein, mouse; D001120:Arginine; D011484:Protein-Arginine N-Methyltransferases; C119966:coactivator-associated arginine methyltransferase 1; C484389:Hdac1 protein, mouse; D056284:Histone Deacetylase 1
CARM1; DNA repair; HDAC1; NBS1; PpoI; chromatin; nucleolus
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