title: An Ecological Framework of the Human Virome Provides Classification of Current Knowledge and Identifies Areas of Forthcoming Discovery.
abstract: Recent advances in sequencing technologies have opened the door for the classification of the human virome. While taxonomic classification can be applied to the viruses identified in such studies, this gives no information as to the type of interaction the virus has with the host. As follow-up studies are performed to address these questions, the description of these virus-host interactions would be greatly enriched by applying a standard set of definitions that typify them. This paper describes a framework with which all members of the human virome can be classified based on principles of ecology. The scaffold not only enables categorization of the human virome, but can also inform research aimed at identifying novel virus-host interactions.
authors.affiliation: Department of Immunobiology, Yale University School of Medicine, New Haven, CT, USA.
authors.forename: Michael T
authors.initials: MT
authors.lastname: Parker
mesh_terms: D016679:Genome, Viral / Q000235:genetics*; D006801:Humans; D013559:Symbiosis / Q000235:genetics; D014773:Virology; D014780:Viruses / Q000235:genetics*
keywords: commensalism; ecology; endogenous retroelements; evolution; human health; immunology; microbiology; microbiome; mutualism; parasitism; phage therapy; symbiosis; virology; virome