title: Molecular simulations of lactose-bound and unbound forms of the FaeG adhesin reveal critical amino acids involved in sugar binding.
abstract: F4 fimbriae are protein filaments found in enterotoxigenic Escherichia coli cells and are implicated in the process of bacterial infection due to their function as bacterial adhesins. These filaments are comprised from several proteins, but the bacterial adhesin FaeG, which is a lactose-binding protein, is the major subunit comprising F4 fimbriae. Crystal structures for three variants of the FaeG protein were recently solved, including the ad variant of FaeG that was crystallized in complex with lactose. However, the dynamics of the FaeG protein bound to lactose have not been explored previously using molecular dynamics simulations. Therefore, in order to study the dynamical interactions between the FaeG ad variant and lactose, we have carried out the first all-atom molecular dynamics simulations of this system. We have also probed the role of crystallographic water molecules on the stability of lactose in the FaeG binding site, and have simulated seven FaeG mutants to probe the influence of amino acid substitutions on the ability of FaeG to bind lactose effectively. Our simulations agree well with experimental results for the influence of mutations on lactose binding, provide dynamical insights into the interactions of FaeG with lactose, and also suggest the possibility of additional regions of the FaeG protein that may act as secondary lactose binding sites.
authors.affiliation: Department of Chemistry, The College of New Jersey, 2000 Pennington Road, Ewing, NJ 08628, United States. Electronic address: bakerj@tcnj.edu.
authors.forename: Joseph L
authors.initials: JL
authors.lastname: Baker
authors.affiliation: Department of Chemistry, The College of New Jersey, 2000 Pennington Road, Ewing, NJ 08628, United States.
authors.forename: Heba
authors.initials: H
authors.lastname: Jafri
mesh_terms: D018830:Adhesins, Escherichia coli / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D000595:Amino Acid Sequence; D000596:Amino Acids / Q000737:chemistry / Q000378:metabolism*; D001665:Binding Sites; D018360:Crystallography, X-Ray; D005690:Galactose / Q000737:chemistry; D007785:Lactose / Q000378:metabolism*; D056004:Molecular Dynamics Simulation; D017354:Point Mutation / Q000235:genetics; D017433:Protein Structure, Secondary; D055672:Static Electricity; D013329:Structure-Activity Relationship; D013816:Thermodynamics; D013997:Time Factors
chemical_list: D018830:Adhesins, Escherichia coli; D000596:Amino Acids; C494388:FaeG protein, E coli; D007785:Lactose; D005690:Galactose
keywords: Epithelial; FaeG adhesin; Lactose; Lectin; Molecular dynamics simulations; Mutation; Sugar binding