title: Structural insights into conformational stability of both wild-type and mutant EZH2 receptor.
abstract: Polycomb group (PcG) proteins have been observed to maintain the pattern of histone by methylation of the histone tail responsible for the gene expression in various cellular processes, of which enhancer of zeste homolog 2 (EZH2) acts as tumor suppressor. Overexpression of EZH2 results in hyper activation found in a variety of cancer. Point mutation on two important residues were induced and the results were compared between the wild type and mutant EZH2. The mutation of Y641 and A677 present in the active region of the protein alters the interaction of the top ranked compound with the newly modeled binding groove of the SET domain, giving a GLIDE score of -12.26 kcal/mol, better than that of the wild type at -11.664 kcal/mol. In depth analysis were carried out for understanding the underlying molecular mechanism using techniques viz. molecular dynamics, principal component analysis, residue interaction network and free energy landscape analysis, which showed that the mutated residues changed the overall conformation of the system along with the residue-residue interaction network. The insight from this study could be of great relevance while designing new compounds for EZH2 enzyme inhibition and the effect of mutation on the overall binding mechanism of the system.
authors.affiliation: Department of Bioinformatics, Indian Institute of Information Technology Allahabad, Uttar Pradesh, India.
authors.forename: Imlimaong
authors.initials: I
authors.lastname: Aier
authors.affiliation: Department of Bioinformatics, Indian Institute of Information Technology Allahabad, Uttar Pradesh, India.
authors.forename: Pritish Kumar
authors.initials: PK
authors.lastname: Varadwaj
authors.affiliation: Department of Bioinformatics, Indian Institute of Information Technology Allahabad, Uttar Pradesh, India.
authors.forename: Utkarsh
authors.initials: U
authors.lastname: Raj
mesh_terms: D019943:Amino Acid Substitution; D018360:Crystallography, X-Ray; D000071221:Enhancer of Zeste Homolog 2 Protein / Q000737:chemistry* / Q000235:genetics*; D006801:Humans; D008958:Models, Molecular; D062105:Molecular Docking Simulation; D056004:Molecular Dynamics Simulation; D016297:Mutagenesis, Site-Directed; D025341:Principal Component Analysis; D011487:Protein Conformation; D060066:Protein Interaction Maps; D055550:Protein Stability; D025521:Tumor Suppressor Proteins / Q000737:chemistry / Q000235:genetics
chemical_list: D025521:Tumor Suppressor Proteins; C498409:EZH2 protein, human; D000071221:Enhancer of Zeste Homolog 2 Protein