title: A Novel Self-Assembling DNA Nano Chip for Rapid Detection of Human Papillomavirus Genes.
abstract: Rapid detection of tumor-associated DNA such as Human Papillomavirus (HPV) has important clinical value for the early screening of tumors. By attaching oligonucleotides or cDNA onto the chip surface, DNA chip technology provides a rapid method to analyze gene expression. However, challenges remain regarding increasing probe density and improving detection time. To address these challenges, we proposed a DNA chip that was self-assembled from single stranded DNA in combination with high probe density and a rapid detection method. Over 200 probes could be attached to the surface of this 100-nm diameter DNA chip. For detection, the chips were adsorbed onto a mica surface and then incubated for ten minutes with HPV-DNA; the results were directly observable using atomic force microscopy (AFM). This bottom-up fabricated DNA nano chip combined with high probe density and direct AFM detection at the single molecule level will likely have numerous potential clinical applications for gene screening and the early diagnosis of cancer.
authors.affiliation: Department of Gynecology 2, Renmin Hospital of Wuhan University, Wuhan 430060, Hubei, China.
authors.forename: Xin
authors.initials: X
authors.lastname: Li
authors.affiliation: Department of Gynecology 2, Renmin Hospital of Wuhan University, Wuhan 430060, Hubei, China.
authors.forename: Yanbo
authors.initials: Y
authors.lastname: Li
authors.affiliation: Department of Gynecology 2, Renmin Hospital of Wuhan University, Wuhan 430060, Hubei, China.
authors.forename: Li
authors.initials: L
authors.lastname: Hong
mesh_terms: D004277:DNA, Single-Stranded / Q000235:genetics / Q000378:metabolism; D004279:DNA, Viral / Q000032:analysis* / Q000235:genetics / Q000378:metabolism; D006801:Humans; D018625:Microscopy, Atomic Force; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D027383:Papillomaviridae / Q000235:genetics* / Q000302:isolation & purification; D030361:Papillomavirus Infections / Q000175:diagnosis* / Q000821:virology; D011933:Reagent Kits, Diagnostic
chemical_list: D004277:DNA, Single-Stranded; D004279:DNA, Viral; D011933:Reagent Kits, Diagnostic