title: Sequence Based Structural Characterization and Genetic Diversity Analysis of Full Length TLR4 CDS in Crossbred and Indigenous Cattle.
abstract: The exploration of candidate genes for immune response in cattle may be vital for improving our understanding regarding the species specific response to pathogens. Toll-like receptor 4 (TLR4) is mostly involved in protection against the deleterious effects of Gram negative pathogens. Approximately 2.6 kb long cDNA sequence of TLR4 gene covering the entire coding region was characterized in two Indian milk cattle (Vrindavani and Tharparkar). The phylogenetic analysis confirmed that the bovine TLR4 was apparently evolved from an ancestral form that predated the appearance of vertebrates, and it is grouped with buffalo, yak, and mithun TLR4s. Sequence analysis revealed a 2526-nucleotide long open reading frame (ORF) encoding 841 amino acids, similar to other cattle breeds. The calculated molecular weight of the translated ORF was 96144 and 96040.9 Da; the isoelectric point was 6.35 and 6.42 in Vrindavani and Tharparkar cattle, respectively. The Simple Modular Architecture Research Tool (SMART) analysis identified 14 leucine rich repeats (LRR) motifs in bovine TLR4 protein. The deduced TLR4 amino acid sequence of Tharparkar had 4 different substitutions as compared to Bos taurus, Sahiwal, and Vrindavani. The signal peptide cleavage site predicted to lie between 16th and 17th amino acid of mature peptide. The transmebrane helix was identified between 635-657 amino acids in the mature peptide.
authors.affiliation: a OUAT , Animal Breeding and Genetics , Bhubaneswar , India.
authors.forename: Chinmoy
authors.initials: C
authors.lastname: Mishra
authors.affiliation: b Division of Animal Genetics , Indian Veterinary Research Institute , Izatnagar , India.
authors.forename: Subodh
authors.initials: S
authors.lastname: Kumar
authors.affiliation: b Division of Animal Genetics , Indian Veterinary Research Institute , Izatnagar , India.
authors.forename: Arvind Asaram
authors.initials: AA
authors.lastname: Sonwane
authors.affiliation: b Division of Animal Genetics , Indian Veterinary Research Institute , Izatnagar , India.|c Veterinary College , Animal Genetics and Breeding , Nandinagar , Bidar , India.
authors.forename: H M
authors.initials: HM
authors.lastname: Yathish
authors.affiliation: b Division of Animal Genetics , Indian Veterinary Research Institute , Izatnagar , India.
authors.forename: Rajni
authors.initials: R
authors.lastname: Chaudhary
mesh_terms: D020816:Amino Acid Motifs; D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D001947:Breeding; D002417:Cattle / Q000145:classification / Q000235:genetics* / Q000276:immunology; D003433:Crosses, Genetic; D014644:Genetic Variation; D016366:Open Reading Frames / Q000235:genetics; D010802:Phylogeny; D016415:Sequence Alignment / Q000662:veterinary; D017422:Sequence Analysis, DNA; D013045:Species Specificity; D051197:Toll-Like Receptor 4 / Q000737:chemistry / Q000235:genetics* / Q000276:immunology
chemical_list: D051197:Toll-Like Receptor 4
keywords: Aminoacid; ORF; TLR4; cattle; gene