title: Quantifying protein dynamics in the ps-ns time regime by NMR relaxation.
abstract: Both15N chemical shift anisotropy (CSA) and sufficiently rapid exchange linebroadening transitions exhibit relaxation contributions that are proportional to the square of the magnetic field. Deconvoluting these contributions is further complicated by residue-dependent variations in protein amide15N CSA values which have proven difficult to accurately measure. Exploiting recently reported improvements for the implementation of T1and T1ρexperiments, field strength-dependent studies have been carried out on the B3 domain of protein G (GB3) as well as on the immunophilin FKBP12 and a H87V variant of that protein in which the major conformational exchange linebroadening transition is suppressed. By applying a zero frequency spectral density rescaling analysis to the relaxation data collected at magnetic fields from 500 to 900 MHz1H, differential residue-specific15N CSA values have been obtained for GB3 which correlate with those derived from solid state and liquid crystalline NMR measurements to a level similar to the correlation among those previously reported studies. Application of this analysis protocol to FKBP12 demonstrated an efficient quantitation of both weak exchange linebroadening contributions and differential residue-specific15N CSA values. Experimental access to such differential residue-specific15N CSA values should significantly facilitate more accurate comparisons with molecular dynamics simulations of protein motion that occurs within the timeframe of global molecular tumbling.
authors.affiliation: Wadsworth Center, New York State Department of Health and Department of Biomedical Sciences, School of Public Health, University at Albany - SUNY, Empire State Plaza, Albany, NY, 12201, USA.
authors.forename: Griselda
authors.initials: G
authors.lastname: Hernández
authors.affiliation: Wadsworth Center, New York State Department of Health and Department of Biomedical Sciences, School of Public Health, University at Albany - SUNY, Empire State Plaza, Albany, NY, 12201, USA. david.lemaster@health.ny.gov.
authors.forename: David M
authors.initials: DM
authors.lastname: LeMaster
mesh_terms: D060526:Magnetic Fields; D009682:Magnetic Resonance Spectroscopy / Q000379:methods; D019906:Nuclear Magnetic Resonance, Biomolecular / Q000379:methods; D011506:Proteins / Q000737:chemistry*; D011994:Recombinant Proteins; D022061:Tacrolimus Binding Protein 1A / Q000737:chemistry
chemical_list: D011506:Proteins; D011994:Recombinant Proteins; D022061:Tacrolimus Binding Protein 1A
keywords: Chemical shift anisotropy; Exchange linebroadening; FKBP12; Field strength dependence; GB3