title: Fluctuation sensitivity of a transcriptional signaling cascade.
abstract: The internal biochemical state of a cell is regulated by a vast transcriptional network that kinetically correlates the concentrations of numerous proteins. Fluctuations in protein concentration that encode crucial information about this changing state must compete with fluctuations caused by the noisy cellular environment in order to successfully transmit information across the network. Oftentimes, one protein must regulate another through a sequence of intermediaries, and conventional wisdom, derived from the data processing inequality of information theory, leads us to expect that longer sequences should lose more information to noise. Using the metric of mutual information to characterize the fluctuation sensitivity of transcriptional signaling cascades, we find, counter to this expectation, that longer chains of regulatory interactions can instead lead to enhanced informational efficiency. We derive an analytic expression for the mutual information from a generalized chemical kinetics model that we reduce to simple, mass-action kinetics by linearizing for small fluctuations about the basal biological steady state, and we find that at long times this expression depends only on a simple ratio of protein production to destruction rates and the length of the cascade. We place bounds on the values of these parameters by requiring that the mutual information be at least one bit-otherwise, any received signal would be indistinguishable from noise-and we find not only that nature has devised a way to circumvent the data processing inequality, but that it must be circumvented to attain this one-bit threshold. We demonstrate how this result places informational and biochemical efficiency at odds with one another by correlating high transcription factor binding affinities with low informational output, and we conclude with an analysis of the validity of our assumptions and propose how they might be tested experimentally.
authors.affiliation: U.S. Army Engineer Research and Development Center, Vicksburg, Mississippi 39180, USA.
authors.forename: Kevin R
authors.initials: KR
authors.lastname: Pilkiewicz
authors.affiliation: U.S. Army Engineer Research and Development Center, Vicksburg, Mississippi 39180, USA.
authors.forename: Michael L
authors.initials: ML
authors.lastname: Mayo
mesh_terms: D053263:Gene Regulatory Networks; D007700:Kinetics; D008954:Models, Biological; D008956:Models, Chemical; D015398:Signal Transduction