title: Looping probability of random heteropolymers helps to understand the scaling properties of biopolymers.
abstract: Random heteropolymers are a minimal description of biopolymers and can provide a theoretical framework to the investigate the formation of loops in biophysical experiments. The looping probability as a function of polymer length was observed to display in some biopolymers, like chromosomes in cell nuclei or long RNA chains, anomalous scaling exponents. Combining a two-state model with self-adjusting simulated-tempering calculations, we calculate numerically the looping properties of several realizations of the random interactions within the chain. We find a continuous set of exponents upon varying the temperature, which arises from finite-size effects and is amplified by the disorder of the interactions. We suggest that this could provide a simple explanation for the anomalous scaling exponents found in experiments. In addition, our results have important implications notably for the study of chromosome folding as they show that scaling exponents cannot be the sole criteria for testing hypothesis-driven models of chromosome architecture.
authors.affiliation: Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.
authors.forename: Y
authors.initials: Y
authors.lastname: Zhan
authors.affiliation: Friedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland.
authors.forename: L
authors.initials: L
authors.lastname: Giorgetti
authors.affiliation: Center for Complexity and Biosystems and Department of Physics, Università degli Studi di Milano and INFN, via Celoria 16, 20133 Milano, Italy.
authors.forename: G
authors.initials: G
authors.lastname: Tiana
mesh_terms: D001704:Biopolymers / Q000378:metabolism*; D008954:Models, Biological; D011108:Polymers / Q000378:metabolism; D011336:Probability; D013696:Temperature
chemical_list: D001704:Biopolymers; D011108:Polymers