title: Molecular Detection and Environment-Specific Diversity of Glycosyl Hydrolase Family 1 β-Glucosidase in Different Habitats.
abstract: β-glucosidase is a crucial element of the microbial cellulose multienzyme complex since it is responsible for the regulation of the entire cellulose hydrolysis process. Therefore, the aim of the present work was to explore the diversity and distribution of glycosyl hydrolase family 1 β-glucosidase genes in three different environmental niches including, Himalayan soil, cow dung and compost by metagenomic approach. Preliminary evaluation through metabolic profiling using BIOLOG based utilization patterns of carbon, nitrogen, phosphorus and sulfur revealed the environment and substrate specific nature of the indigenous microbial population. Furthermore, clonal library selection, screening and sequence analysis revealed that most of the GH1 β-glucosidase proteins had low identities with the available database. Analysis of the distribution of GH1 β-glucosidase gene fragments and β-glucosidase producing microbial community revealed the environment specific nature. The OTUs obtained from Himalayan soil and compost metagenomic libraries were grouped into 19 different genera comprising 6 groups. The cow dung sample displayed the least diversity of GH1 β-glucosidase sequences, with only 14 genera, distributed among three groups- Bacteroidetes, Firmicutes, and Actinobacteria. The metagenomic study coupled with metabolic profiling of GH1 β-glucosidase illustrated the existence of intricate relationship between the geochemical environmental factors and inherent microbial community.
authors: Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand UniversityRohtak, India; Division of Microbiology, ICAR-Indian Agricultural Research InstituteNew Delhi, India.
authors: Rameshwar
authors: R
authors: Tiwari
authors: ICAR-National Research Centre on Plant Biotechnology, LBS Centre, Indian Agricultural Research Institute New Delhi, India.
authors: Kanika
authors: K
authors: Kumar
authors: Division of Microbiology, ICAR-Indian Agricultural Research Institute New Delhi, India.
authors: Surender
authors: S
authors: Singh
authors: Division of Microbiology, ICAR-Indian Agricultural Research Institute New Delhi, India.
authors: Lata
authors: L
authors: Nain
authors: Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand University Rohtak, India.
authors: Pratyoosh
authors: P
authors: Shukla
keywords: GH1 β-glucosidase; metabolic profiling; metagenomics; microbial community; operational taxonomic units