title: Structural and functional annotation of human FAM26F: A multifaceted protein having a critical role in the immune system.
abstract: BACKGROUND
  Human immune system is a complex amalgam of a greatly diverse ensemble comprising of various cellular and non-cellular components, including proteins. FAM26F (family with sequence similarity 26, member F) is a relatively recently identified gene reported to play important role in diverse immune responses. Numerous studies have reported FAM26F to be differentially expressed in several viral, bacterial and parasitic infections, in certain pathophysiological conditions such as heart and liver transplantation, and in several cancers. FAM26F has also been found to be upregulated by various stimulants such as polyI:C, LPS, INF gamma and TNF alpha, and via various anticipated pathways including TLR3, TLR4 IFN-β and Dectin-1. Moreover, the synergistic expression of FAM26F on both NK-cells and myeloid dendritic cells is required to activate NK-cells against tumors via its cytoplasmic tail, thus emphasizing the therapeutic potential of FAM26F for NK sensitive tumors. Although a considerable amount of evidence is present regarding the potential role of FAM26F in immune modulation, the exact function and modulatory pathways of this gene are yet to be elucidated. We aimed to completely characterize FAM26F in order to apprehend its function and role in the immune responses.
  
  
  RESULTS
  The results revealed human FAM26F to be located at chromosomal position 6q22.1. FAM26F mRNA contains 1141bp coding region encoding a 315 amino acid long, stable protein that has been well-conserved throughout evolution. It is a signal peptide deprived transmembrane protein that is secreted through non-classical pathway. The presence of a single well-conserved Ca_hom_mod domain indicated FAM26F to be a cation channel involved in the transport of molecules. A potential N-glycosylation and 14 phosphorylation sites were also predicted, along with four interacting partners of FAM26F. The secondary and tertiary structures of FAM26F were determined. Moreover, the presence of an immunoglobulin-like fold in FAM26F emphasized its role in immune responses.
  
  
  CONCLUSIONS
  This is the first in silico structural and functional characterization of FAM26F which will be helpful in better understanding the role of FAM26F in the context of the immune system and may also lead to the identification of novel therapeutic targets.
authors: Department of Healthcare Biotechnology, Atta-ur-Rahman School of Applied Biosciences (ASAB), National University of Sciences and Technology (NUST), Islamabad, 44000, Pakistan. Electronic address: uzmamalik_86@yahoo.com.
authors: Uzma
authors: U
authors: Malik
authors: Department of Healthcare Biotechnology, Atta-ur-Rahman School of Applied Biosciences (ASAB), National University of Sciences and Technology (NUST), Islamabad, 44000, Pakistan. Electronic address: javedaneela@gmail.com.
authors: Aneela
authors: A
authors: Javed
authors: Department of Industrial Biotechnology, Atta-ur-Rahman School of Applied Biosciences (ASAB), National University of Sciences and Technology (NUST), Islamabad, 44000, Pakistan. Electronic address: amjaduni@gmail.com.
authors: Amjad
authors: A
authors: Ali
authors: Basic Sciences Research, Shaukat Khanum Memorial Cancer Hospital and Research Centre (SKMCH & RC), Lahore, 54000, Pakistan. Electronic address: kashifasghar@skm.org.pk.
authors: Kashif
authors: K
authors: Asghar
mesh_terms: D002896:Chromosomes, Human, Pair 6; D003198:Computer Simulation; D006801:Humans; D008562:Membrane Glycoproteins / Q000737:chemistry* / Q000235:genetics / Q000276:immunology / Q000378:metabolism*; D008958:Models, Molecular; D010802:Phylogeny; D011487:Protein Conformation; D060066:Protein Interaction Maps; D011499:Protein Processing, Post-Translational; D021382:Protein Sorting Signals / Q000235:genetics
chemical_list: C000599332:CALHM6 protein, human; D008562:Membrane Glycoproteins; D021382:Protein Sorting Signals
keywords: Functional annotation; Immune regulation; In silico characterization; Interaction network; Modulatory pathways; Phylogenetic analysis; Subcellular localization