title: Whole-Genome DNA Methylation Analysis of Peripheral Blood Mononuclear Cells in Multiple Sclerosis Patients with Different Disease Courses.
abstract: Multiple sclerosis (MS) is a severe neurodegenerative disease of polygenic etiology affecting the central nervous system. In addition to genetic factors, epigenetic mechanisms, primarily DNA methylation, which regulate gene expression, play an important role in MS development and progression. In this study, we have performed the first whole-genome DNA methylation profiling of peripheral blood mononuclear cells in relapsing-remitting MS (RRMS) and primary-progressive MS (PPMS) patients and compared them to those of healthy individuals in order to identify the differentially methylated CpG-sites (DMSs) associated with these common clinical disease courses. In addition, we have performed a pairwise comparison of DNA methylation profiles in RRMS and PPMS patients. All three pairwise comparisons showed significant differences in methylation profiles. Hierarchical clustering of the identified DMS methylation levels and principal component analysis for data visualization demonstrated a clearly defined aggregation of DNA samples of the compared groups into separate clusters. Compared with the control, more DMSs were identified in PPMS patients than in RRMS patients (67 and 30, respectively). More than half of DMSs are located in genes, exceeding the expected number for random distribution of DMSs between probes. RRMS patients mostly have hypomethylated DMSs, while in PPMS patients DMSs are mostly hypermethylated. CpG-islands and CpG-shores contain 60% of DMSs, identified by pairwise comparison of RRMS and control groups, and 79% of those identified by pairwise comparison of PPMS and control groups. Pairwise comparison of patients with two clinical MS courses revealed 51 DMSs, 82% of which are hypermethylated in PPMS. Overall, it was demonstrated that there are more changes in the DNA methylation profiles in PPMS than in RRMS. The data confirm the role of DNA methylation in MS development. We have shown, for the first time, that DNA methylation as an epigenetic mechanism is involved in the formation of two distinct clinical courses of MS: namely, RRMS and PPMS.
authors: Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russia ; Institute of Experimental Cardiology, Russian Cardiology Scientific and Production Center, 3th Cherepkovskaya str. 15A, Moscow, 121552, Russia.
authors: O G
authors: OG
authors: Kulakova
authors: Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrentiev Avenue 8, Novosibirsk, 630090, Russia.
authors: M R
authors: MR
authors: Kabilov
authors: Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkina str. 1, Moscow, 119991 , Russia ; Johns Hopkins School of Medicine, Baltimore, MD 21205, USA.
authors: L V
authors: LV
authors: Danilova
authors: Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russia.
authors: E V
authors: EV
authors: Popova
authors: Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrentiev Avenue 8, Novosibirsk, 630090, Russia.
authors: O A
authors: OA
authors: Baturina
authors: Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russia ; Institute of Experimental Cardiology, Russian Cardiology Scientific and Production Center, 3th Cherepkovskaya str. 15A, Moscow, 121552, Russia.
authors: E Y
authors: EY
authors: Tsareva
authors: Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russia ; Institute of Experimental Cardiology, Russian Cardiology Scientific and Production Center, 3th Cherepkovskaya str. 15A, Moscow, 121552, Russia.
authors: N M
authors: NM
authors: Baulina
authors: Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russia ; Institute of Experimental Cardiology, Russian Cardiology Scientific and Production Center, 3th Cherepkovskaya str. 15A, Moscow, 121552, Russia.
authors: I S
authors: IS
authors: Kiselev
authors: Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russia.
authors: A N
authors: AN
authors: Boyko
authors: Vavilov Institute of General Genetics, Russian Academy of Sciences, Gubkina str. 1, Moscow, 119991 , Russia ; Johns Hopkins School of Medicine, Baltimore, MD 21205, USA.
authors: A V
authors: AV
authors: Favorov
authors: Pirogov Russian National Research Medical University, Ostrovityanova str. 1, Moscow, 117997, Russia ; Institute of Experimental Cardiology, Russian Cardiology Scientific and Production Center, 3th Cherepkovskaya str. 15A, Moscow, 121552, Russia.
authors: O O
authors: OO
authors: Favorova
authors: Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Lavrentiev Avenue 8, Novosibirsk, 630090, Russia.
authors: V V
authors: VV
authors: Vlassov
keywords: DNA methylation; epigenetics; multiple sclerosis; peripheral blood mononuclear cells