title: ImageJ-MATLAB: a bidirectional framework for scientific image analysis interoperability.
abstract: ImageJ-MATLAB is a lightweight Java library facilitating bi-directional interoperability between MATLAB and ImageJ. By defining a standard for translation between matrix and image data structures, researchers are empowered to select the best tool for their image-analysis tasks.
  
  
  
  Freely available extension to ImageJ2 ( http://imagej.net/Downloads ). Installation and use instructions available at http://imagej.net/MATLAB_Scripting. Tested with ImageJ 2.0.0-rc-54 , Java 1.8.0_66 and MATLAB R2015b.
  
  
  
  eliceiri@wisc.edu.
  
  
  
  Supplementary data are available at Bioinformatics online.
authors: Laboratory for Optical and Computational Instrumentation, Madison, WI 53706, USA.
authors: Mark C
authors: MC
authors: Hiner
authors: Laboratory for Optical and Computational Instrumentation, Madison, WI 53706, USA.
authors: Curtis T
authors: CT
authors: Rueden
authors: Laboratory for Optical and Computational Instrumentation, Madison, WI 53706, USA.|Morgridge Institute for Research, Madison, WI 53715, USA.
authors: Kevin W
authors: KW
authors: Eliceiri
mesh_terms: D000465:Algorithms; D000818:Animals; D006801:Humans; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D012984:Software