Network motifs modulate druggability of cellular targets.
Druggability refers to the capacity of a cellular target to be modulated by a small-molecule drug. To date, druggability is mainly studied by focusing on direct binding interactions between a drug and its target. However, druggability is impacted by cellular networks connected to a drug target. Here, we use computational approaches to reveal basic principles of network motifs that modulate druggability. Through quantitative analysis, we find that inhibiting self-positive feedback loop is a more robust and effective treatment strategy than inhibiting other regulations, and adding direct regulations to a drug-target generally reduces its druggability. The findings are explained through analytical solution of the motifs. Furthermore, we find that a consensus topology of highly druggable motifs consists of a negative feedback loop without any positive feedback loops, and consensus motifs with low druggability have multiple positive direct regulations and positive feedback loops. Based on the discovered principles, we predict potential genetic targets in Escherichia coli that have either high or low druggability based on their network context. Our work establishes the foundation toward identifying and predicting druggable targets based on their network topology.
Department of Biomedical Engineering, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA.
Fan
F
Wu
Computational Biology Department, School of Computer Science, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA.
Cong
C
Ma
Department of Biomedical Engineering, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA.
Cheemeng
C
Tan
D004926:Escherichia coli / Q000235:genetics* / Q000378:metabolism*; D008954:Models, Biological