A Gene Ontology Tutorial in Python.
This chapter is a tutorial on using Gene Ontology resources in the Python programming language. This entails querying the Gene Ontology graph, retrieving Gene Ontology annotations, performing gene enrichment analyses, and computing basic semantic similarity between GO terms. An interactive version of the tutorial, including solutions, is available at http://gohandbook.org .
Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK.|Swiss Institute of Bioinformatics, Biophore Building, 1015, Lausanne, Switzerland.
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Department of Genetics, Evolution and Environment, University College London, Gower St, London, WC1E 6BT, UK. Christophe.Dessimoz@unil.ch.|Swiss Institute of Bioinformatics, Biophore Building, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.|Department of Ecology and Evolution, University of Lausanne, Biophore, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.|Center of Integrative Genomics, University of Lausanne, Biophore, 1015, Lausanne, Switzerland. Christophe.Dessimoz@unil.ch.|Department of Computer Science, University College London, Gower St, London, WC1E 6BT, UK. Christophe.Dessimoz@unil.ch.
Christophe
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D000818:Animals; D063990:Gene Ontology; D006801:Humans; D020407:Internet; D058977:Molecular Sequence Annotation / Q000379:methods*; D012660:Semantics; D012984:Software
Gene Ontology; Python; Tutorial