A single-nucleotide-polymorphism-based genotyping assay for simultaneous detection of different carbendazim-resistant genotypes in theFusarium graminearumspecies complex.
The occurrence resistance to methyl benzimidazole carbamates (MBC)-fungicides in theFusarium graminearumspecies complex (FGSC) is becoming a serious problem in the control of Fusarium head blight in China. The resistance is caused by point mutations in theβ2-tubulingene. So far, five resistant genotypes (F167Y, E198Q, E198L, E198K and F200Y) have been reported in the field. To establish a high-throughput method for rapid detection of all the five mutations simultaneously, an efficient single-nucleotide-polymorphism-based genotyping method was developed based on the Luminex xMAP system. One pair of amplification primers and five allele specific primer extension probes were designed and optimized to specially distinguish the different genotypes within one single reaction. This method has good extensibility and can be combined with previous reported probes to form a highly integrated tool for species, trichothecene chemotype and MBC resistance detection. Using this method, carbendazim resistant FGSC isolates from Jiangsu, Anhui and Sichuan Province in China were identified. High and moderate frequencies of resistance were observed in Jiangsu and Anhui Province, respectively. Carbendazim resistance inF. asiaticumis only observed in the 3ADON genotype. Overall, our method proved to be useful for early detection of MBC resistance in the field and the result aids in the choice of fungicide type.
Institute of Plant Protection, Chinese Academy of Agricultural Sciences , Beijing , China.
Hao
H
Zhang
CBS-KNAW Fungal Biodiversity Centre, Royal Netherlands Academy of Arts and Sciences, Utrecht, Netherlands; Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, Netherlands.
Balázs
B
Brankovics
Department of Biointeractions and Plant Health, Wageningen University and Research , Wageningen , Netherlands.
Theo A J
TA
van der Lee
Department of Biointeractions and Plant Health, Wageningen University and Research , Wageningen , Netherlands.
Cees
C
Waalwijk
CBS-KNAW Fungal Biodiversity Centre, Royal Netherlands Academy of Arts and Sciences , Utrecht , Netherlands.
Anne A D
AA
van Diepeningen
Institute of Plant Protection, Chinese Academy of Agricultural Sciences , Beijing , China.
Jin
J
Xu
Institute of Plant Protection, Chinese Academy of Agricultural Sciences , Beijing , China.
Jingsheng
J
Xu
Institute of Plant Protection, Chinese Academy of Agricultural Sciences , Beijing , China.
Wanquan
W
Chen
Institute of Plant Protection, Chinese Academy of Agricultural Sciences , Beijing , China.
Jie
J
Feng
Fusarium graminearum species complex; Luminex; MBC resistance