Quantitative trait loci mapping of the stigma exertion rate and spikelet number per panicle in rice (Oryza sativa L.).
The stigma exertion rate is a polygenic inherited trait that is important for increased seed yield in hybrid rice breeding. To identify quantitative trait loci (QTL) associated with high stigma exertion rate, we conducted QTL mapping using 134 recombinant inbred lines derived from XieqingzaoB and Zhonghui9308, which have high and low stigma exertion rates, respectively. A total of eight QTLs (qSES6, qSSE11, qDSE1a, qDSE1b, qDSE10, qDSE11, qTSE1, and qTSE11) for single stigma exertion, double stigma exertion, and total stigma exertion were detected. The locations of qSSE11 and qTSE11 have not been previously reported, and the qDSE11 allele from parent XQZB exhibited a positive additive effect. In addition, three QTLs (qSNP1, qSNP3a, and qSNP3b), for spikelet number per panicle were identified. Of note, one QTL (qSNP1) was detected in two different environments (Hainan and Zhejiang). To evaluate the advantage of exerted stigma for cross-pollination, single, dual, and total stigma exertion should be considered separately for future genetic improvement in the production of rice hybrid seeds. In addition, this study provides information for fine mapping, gene cloning, and marker assisted selection, with emphasis on the latter.
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
M H
MH
Rahman
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
P
P
Yu
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
Y X
YX
Zhang
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
L P
LP
Sun
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
W X
WX
Wu
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
X H
XH
Shen
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
X D
XD
Zhan
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
D B
DB
Chen
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China.
L Y
LY
Cao
National Center for Rice Improvement, China National Rice Research Institute, Key Laboratory for Zhejiang Super Rice Research, Hangzhou, Zhejiang, China shcheng@mail.hz.zj.cn.
S H
SH
Cheng
D000704:Analysis of Variance; D002874:Chromosome Mapping / Q000379:methods*; D032461:Chromosomes, Plant / Q000235:genetics; D004777:Environment; D005828:Genetics, Population; D007178:Inbreeding; D008957:Models, Genetic; D012275:Oryza / Q000033:anatomy & histology* / Q000235:genetics*; D020641:Polymorphism, Single Nucleotide / Q000235:genetics; D040641:Quantitative Trait Loci / Q000235:genetics*; D019655:Quantitative Trait, Heritable; D011995:Recombination, Genetic / Q000235:genetics; D013696:Temperature