Optimization of Caged Electrophiles for Improved Monitoring of Cysteine Reactivity in Living Cells.
Cysteine residues play critical roles in protein function and are susceptible to numerous post-translational modifications (PTMs) that serve to modulate the activity and localization of diverse proteins. Many of these PTMs are highly transient and labile, thus necessitating methods to study these modifications directly within the context of living cells. We previously reported a caged electrophilic probe, CBK1, that can be activated by UV for temporally controlled covalent modification of cysteine residues in living cells. To improve upon the number of cysteine residues identified in cellular cysteine-profiling studies, the reactivity and uncaging efficiency of a panel of caged electrophiles were explored. We identified an optimized caged electrophilic probe, CIK4, that affords significantly improved coverage of cellular cysteine residues. The broader proteome coverage afforded by CIK4 renders it a useful tool for the biological investigation of cysteine-reactivity changes and PTMs directly within living cells and highlights design elements that are critical to optimizing photoactivatable chemical probes for cellular labeling.
Department of Chemistry, Boston College, Chestnut Hill, MA, 02467, USA.
Masahiro
M
Abo
Department of Chemistry, Boston College, Chestnut Hill, MA, 02467, USA.
Daniel W
DW
Bak
Department of Chemistry, Boston College, Chestnut Hill, MA, 02467, USA.
Eranthie
http://orcid.org/0000-0002-0835-8301
E
Weerapana
D000480:Alkynes / Q000737:chemistry* / Q000633:toxicity; D045744:Cell Line, Tumor; D002470:Cell Survival / Q000187:drug effects; D002851:Chromatography, High Pressure Liquid; D003545:Cysteine / Q000737:chemistry* / Q000378:metabolism; D004149:Dioxoles / Q000737:chemistry* / Q000633:toxicity; D004591:Electrophoresis, Polyacrylamide Gel; D006367:HeLa Cells; D006801:Humans; D007659:Ketones / Q000737:chemistry / Q000633:toxicity; D011499:Protein Processing, Post-Translational; D011506:Proteins / Q000737:chemistry / Q000378:metabolism; D053719:Tandem Mass Spectrometry; D014466:Ultraviolet Rays
D000480:Alkynes; C000618844:CBK1 compound; D004149:Dioxoles; D007659:Ketones; D011506:Proteins; D003545:Cysteine
cage compounds; cysteine; electrophilic addition; photochemistry; proteomics