title: Rigor of cell fate decision by variable p53 pulses and roles of cooperative gene expression by p53.
abstract: Upon DNA damage, the cell fate decision between survival and apoptosis is largely regulated by p53-related networks. Recent experiments found a series of discrete p53 pulses in individual cells, which led to the hypothesis that the cell fate decision upon DNA damage is controlled by counting the number of p53 pulses. Under this hypothesis, Sun et al. (2009) modeled the Bax activation switch in the apoptosis signal transduction pathway that can rigorously "count" the number of uniform p53 pulses. Based on experimental evidence, here we use variable p53 pulses with Sun et al.'s model to investigate how the variability in p53 pulses affects the rigor of the cell fate decision by the pulse number. Our calculations showed that the experimentally anticipated variability in the pulse sizes reduces the rigor of the cell fate decision. In addition, we tested the roles of the cooperativity in PUMA expression by p53, finding that lower cooperativity is plausible for more rigorous cell fate decision. This is because the variability in the p53 pulse height is more amplified in PUMA expressions with more cooperative cases.
authors.affiliation: Department of Biophysics, Division of Biology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
authors.forename: Yohei
authors.initials: Y
authors.lastname: Murakami
authors.affiliation: Department of Biophysics, Division of Biology, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
authors.forename: Shoji
authors.initials: S
authors.lastname: Takada
keywords: Apoptosis; cell death; computational biology; systems biology