title: Modeling the effects of lattice defects on microtubule breaking and healing.
abstract: Microtubule reorganization often results from the loss of polymer induced through breakage or active destruction by energy-using enzymes. Pre-existing defects in the microtubule lattice likely lower structural integrity and aid filament destruction. Using large-scale molecular simulations, we model diverse microtubule fragments under forces generated at specific positions to locally crush the filament. We show that lattices with 2% defects are crushed and severed by forces three times smaller than defect-free ones. We validate our results with direct comparisons of microtubule kinking angles during severing. We find a high statistical correlation between the angle distributions from experiments and simulations indicating that they sample the same population of structures. Our simulations also indicate that the mechanical environment of the filament affects breaking: local mechanical support inhibits healing after severing, especially in the case of filaments with defects. These results recall reports of microtubule healing after flow-induced bending and corroborate prior experimental studies that show severing is more likely at locations where microtubules crossover in networks. Our results shed new light on mechanisms underlying the ability of microtubules to be destroyed and healed in the cell, either by external forces or by severing enzymes wedging dimers apart. © 2016 Wiley Periodicals, Inc.
authors.affiliation: Department of Chemistry, University of Cincinnati, Cincinnati, Ohio, 45221.
authors.forename: Nan
authors.initials: N
authors.lastname: Jiang
authors.affiliation: Molecular and Cellular Biology Graduate Program, University of Massachusetts Amherst, Amherst, Massachusetts, 01003.
authors.forename: Megan E
authors.initials: ME
authors.lastname: Bailey
authors.affiliation: Department of Chemistry, University of Cincinnati, Cincinnati, Ohio, 45221.
authors.forename: Jessica
authors.initials: J
authors.lastname: Burke
authors.affiliation: Molecular and Cellular Biology Graduate Program, University of Massachusetts Amherst, Amherst, Massachusetts, 01003.|Department of Physics, University of Massachusetts Amherst, Amherst, Massachusetts, 01003.
authors.forename: Jennifer L
authors.initials: JL
authors.lastname: Ross
authors.affiliation: Department of Chemistry, University of Cincinnati, Cincinnati, Ohio, 45221.
authors.forename: Ruxandra I
authors.initials: RI
authors.lastname: Dima
mesh_terms: D018625:Microscopy, Atomic Force / Q000379:methods*; D008870:Microtubules / Q000737:chemistry
keywords: atomic force spectroscopy; coarse-grained simulations; katanin; microtubule mechanics; microtubule severing enzymes; spastin