title: A CGH array procedure to detect PAX6 gene structural defects.
abstract: Aniridia is a rare congenital disease characterized by eye development defects, in which the more evident clinical manifestation is iris absence or malformation. In most of the patients, aniridia is associated to PAX6 gene point mutations or deletions. When these deletions are large and involve other genes, a more complex disease, named WAGR syndrome, arises. In order to develop a new tool to analyze aniridia and WAGR subjects, a CGH array (CGHa) of the PAX6 genomic region was set up. We generated a custom microarray kit using an oligonucleotide-based platform that allows high resolution molecular profiling of genomic aberrations in 20 Mb of the 11p13 chromosomal region, centered on the PAX6 gene. The average probe spacing was 100 bp. Thirty-five subjects have been analyzed. The major advantage of CGHa compared to MLPA was the knowledge of the deletions borders. Our approach identifies patients harboring deletions including the WT1 gene and, therefore, at risk for kidney tumors. The CGHa assay confirmed that several aniridia patients show a deletion at the level of ELP4 gene, without involvement of the PAX6 exonic regions. In all these patients, deletions include the PAX6 transcriptional enhancer SIMO. This finding further highlights the role of mutation/deletion of long-range enhancers in monogenic human pathology.
authors.affiliation: Istituto di Genetica Medica, Azienda Ospedaliero-Universitaria di Udine, Italy.
authors.forename: Alessandra
authors.initials: A
authors.lastname: Franzoni
authors.affiliation: Istituto di Genetica Medica, Azienda Ospedaliero-Universitaria di Udine, Italy.
authors.forename: Patrizia Dello
authors.initials: PD
authors.lastname: Russo
authors.affiliation: Dipartimento di Scienze Mediche e Biologiche, Università di Udine, Italy.
authors.forename: Federica
authors.initials: F
authors.lastname: Baldan
authors.affiliation: Istituto di Genetica Medica, Azienda Ospedaliero-Universitaria di Udine, Italy.
authors.forename: Angela Valentina
authors.initials: AV
authors.lastname: D'Elia
authors.affiliation: Dipartimento di Scienze Mediche e Biologiche, Università di Udine, Italy.
authors.forename: Cinzia
authors.initials: C
authors.lastname: Puppin
authors.affiliation: Genetica Medica, Dipartimento di Medicina di Laboratorio, Ospedale Niguarda Ca' Granda, Milano, Italy.
authors.forename: Silvana
authors.initials: S
authors.lastname: Penco
authors.affiliation: Istituto di Genetica Medica, Azienda Ospedaliero-Universitaria di Udine, Italy; Dipartimento di Scienze Mediche e Biologiche, Università di Udine, Italy. Electronic address: giuseppe.damante@uniud.it.
authors.forename: Giuseppe
authors.initials: G
authors.lastname: Damante
mesh_terms: D055028:Comparative Genomic Hybridization / Q000379:methods*; D006801:Humans; D000071841:PAX6 Transcription Factor / Q000235:genetics*; D017384:Sequence Deletion
chemical_list: D000071841:PAX6 Transcription Factor
keywords: Aniridia; CGH array; PAX6