title: Molecular phylogeny, biogeography and ecological niche modelling of Cardiocrinum (Liliaceae): insights into the evolutionary history of endemic genera distributed across the Sino-Japanese floristic region.
abstract: The patterns of evolutionary assembly in the Sino-Japanese floristic region (SJFR) remain largely unknown due to a lack of integrative multidimensional studies throughout the region. To address this issue, we elucidated the evolutionary history of Cardiocrinum (Liliaceae), a genus containing four taxa distributed across the SJFR.
  
  
  
  Fifty-four populations were sampled throughout the geographical range of Cardiocrinum to assess genetic structure, analyse phylogenetic relationships and reconstruct ancestral area based on six chloroplast DNA (cpDNA) fragments and three low copy nuclear genes (LCNG). Ecological niche modelling was used to examine the potential range shifts of Cardiocrinum in response to climatic change.
  
  
  
  The molecular data showed high genetic similarity in the cpDNA (98·37 %) and LCNG (94·53 %) sequences. The biogeographical analyses revealed that the ancestor of Cardiocrinum diversified during the late Miocene (approx. 7·32 Mya) in Central China. The ancestor of the C. giganteum lineage dispersed westward to the Himalayas and south-west China with the split between C. giganteum and C. giganteum var. yunnanense occurring around 4·11 Mya consistent with the period of orogeny of the Hengduan Mountains. Some populations of the C. cathayanum lineage dispersed eastward to south Japan via the land bridge approx. 4·97 Mya, providing opportunities for allopatric speciation of C. cordatum The predicted suitable habitats of Cardiocrinum have become smaller and more fragmented since the Last Glacial Maximum.
  
  
  
  Our study provides evidence of a biogeographical pattern of dispersal from Central China to the Himalayas in the west and Japan in the east for genera distributed across the SJFR, and highlights that the orogeny of the Hengduan Mountains and fluctuations of the sea level of the East China Sea played important roles in promoting species divergence.
authors.affiliation: College of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, Sichuan University, Chengdu 610064, PR China.
authors.forename: Li-Qin
authors.initials: LQ
authors.lastname: Yang
authors.affiliation: College of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, Sichuan University, Chengdu 610064, PR China.
authors.forename: Hao-Yu
authors.initials: HY
authors.lastname: Hu
authors.affiliation: College of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, Sichuan University, Chengdu 610064, PR China.
authors.forename: Chuan
authors.initials: C
authors.lastname: Xie
authors.affiliation: College of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, Sichuan University, Chengdu 610064, PR China.
authors.forename: Shan-Pan
authors.initials: SP
authors.lastname: Lai
authors.affiliation: College of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, Sichuan University, Chengdu 610064, PR China.
authors.forename: Mei
authors.initials: M
authors.lastname: Yang
authors.affiliation: College of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, Sichuan University, Chengdu 610064, PR China xjhe@scu.edu.cn songdongzhou@aliyun.com.
authors.forename: Xing-Jin
authors.initials: XJ
authors.lastname: He
authors.affiliation: College of Life Science, Key Laboratory of Bio-Resources and Eco-Environment of Ministry of Education, Sichuan University, Chengdu 610064, PR China xjhe@scu.edu.cn songdongzhou@aliyun.com.
authors.forename: Song-Dong
authors.initials: SD
authors.lastname: Zhou
mesh_terms: D005075:Biological Evolution; D002681:China; D018744:DNA, Plant / Q000235:genetics; D017753:Ecosystem; D014644:Genetic Variation / Q000235:genetics; D007564:Japan; D019668:Liliaceae / Q000235:genetics*; D010802:Phylogeny; D058974:Phylogeography; D017422:Sequence Analysis, DNA
chemical_list: D018744:DNA, Plant
keywords: Biogeography; Cardiocrinum; Sino-Japanese Floristic Region; ecological niche modelling; phylogeny; species divergence