title: Diversity of indoor fungi as revealed by DNA metabarcoding.
abstract: In the present study, we conducted DNA metabarcoding (the nuclear ITS2 region) for indoor fungal samples originating from two nursery schools with a suspected mould problem (sampling before and after renovation), from two university buildings, and from an old farmhouse. Good-quality sequences were obtained, and the results showed that DNA metabarcoding provides high resolution in fungal identification. The pooled proportions of sequences representing filamentous ascomycetes, filamentous basidiomycetes, yeasts, and other fungi equalled 62.3%, 8.0%, 28.3%, and 1.4%, respectively, and the total number of fungal genera found during the study was 585. When comparing fungal diversities and taxonomic composition between different types of buildings, no obvious pattern was detected. The average pairwise values of SørensenChaoindices that were used to compare similarities for taxon composition between samples among the samples from the two university buildings, two nurseries, and farmhouse equaled 0.693, 0.736, 0.852, 0.928, and 0.981, respectively, while the mean similarity index for all samples was 0.864. We discovered that making explicit conclusions on the relationship between the indoor air quality and mycoflora is complicated by the lack of appropriate indicators for air quality and by the occurrence of wide spatial and temporal changes in diversity and compositions among samples.
authors.affiliation: Department of Agricultural Sciences, P.O. Box 27 (Latokartanonkaari 5), FI-00014 University of Helsinki, Finland.|Department of Agricultural Sciences, P.O. Box 27 (Latokartanonkaari 5), FI-00014 University of Helsinki, Finland.
authors.forename: Helena
authors.initials: H
authors.lastname: Korpelainen
authors.affiliation: Department of Agricultural Sciences, P.O. Box 27 (Latokartanonkaari 5), FI-00014 University of Helsinki, Finland.|Department of Agricultural Sciences, P.O. Box 27 (Latokartanonkaari 5), FI-00014 University of Helsinki, Finland.
authors.forename: Maria
authors.initials: M
authors.lastname: Pietiläinen
mesh_terms: D000391:Air Microbiology; D016902:Air Pollution, Indoor; D058893:DNA Barcoding, Taxonomic; D004271:DNA, Fungal; D021901:DNA, Intergenic; D005658:Fungi / Q000145:classification* / Q000235:genetics*; D059014:High-Throughput Nucleotide Sequencing; D006801:Humans; D054892:Metagenome; D056186:Metagenomics; D012621:Seasons
chemical_list: D004271:DNA, Fungal; D021901:DNA, Intergenic
keywords: champignons; fungi; indoor air quality; metabarcoding; métacodage à barres; next generation sequencing; qualité de l’air intérieur; séquençage de nouvelle génération