title: Defining the Core Microbiome in Corals' Microbial Soup.
abstract: Corals are considered one of the most complex microbial biospheres studied to date, hosting thousands of bacterial phylotypes in species-specific associations. There are, however, substantial knowledge gaps and challenges in understanding the functional significance of bacterial communities and bacterial symbioses of corals. The ubiquitous nature of some bacterial interactions has only recently been investigated and an accurate differentiation between the healthy (symbiotic) and unhealthy (dysbiotic) microbial state has not yet been determined. Here we review the complexity of the coral holobiont, coral microbiome diversity, and recently proposed bacterial symbioses of corals. We provide insight into coupling the core microbiome framework with community ecology principals, and draw on the theoretical insights from other complex systems, to build a framework to aid in deciphering ecologically significant microbes within a corals' microbial soup.
authors.affiliation: ARC Centre of Excellence for Coral Reef Studies, James Cook University, Australia; The College of Public Health, Medical and Veterinary Sciences, James Cook University, Australia. Electronic address: alejandra.hernandezagreda@my.jcu.edu.au.
authors.forename: Alejandra
authors.initials: A
authors.lastname: Hernandez-Agreda
authors.affiliation: Hawai'i Institute of Marine Biology, University of Hawai'i at Manoa, USA.
authors.forename: Ruth D
authors.initials: RD
authors.lastname: Gates
authors.affiliation: ARC Centre of Excellence for Coral Reef Studies, James Cook University, Australia.
authors.forename: Tracy D
authors.initials: TD
authors.lastname: Ainsworth
mesh_terms: D000818:Animals; D037421:Anthozoa / Q000382:microbiology* / Q000469:parasitology*; D001419:Bacteria / Q000302:isolation & purification*; D057894:Coral Reefs; D004141:Dinoflagellida / Q000302:isolation & purification*; D064806:Dysbiosis / Q000382:microbiology; D064307:Microbiota; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D013559:Symbiosis / Q000502:physiology
chemical_list: D012336:RNA, Ribosomal, 16S
keywords: coral-associated bacteria; corals; core microbiome; microbe; persistence; symbiosis