title: Posttranscriptional Regulation in Adenovirus Infected Cells.
abstract: A deeper understanding of how viruses reprogram their hosts for production of progeny is needed to combat infections. Most knowledge on the regulation of cellular gene expression during adenovirus infection is derived from mRNA studies. Here, we investigated the changes in protein expression during the late phase of adenovirus type 2 (Ad2) infection of the IMR-90 cell line by stable isotope labeling in cell culture with subsequent liquid chromatography-high resolution tandem mass spectrometric analysis. Two biological replicates of samples collected at 24 and 36 h post-infection (hpi) were investigated using swapped labeling. In total, 2648 and 2394 proteins were quantified at 24 and 36 hpi, respectively. Among them, 659 and 645 were deregulated >1.6-fold at the two time points. The protein expression was compared with RNA expression using cDNA sequencing data. The correlation was surprisingly low (r = 0.3), and several examples of posttranscriptional regulation were observed; e.g., proteins related to carbohydrate metabolism were up-regulated at the protein level but unchanged at the RNA level, whereas histone proteins were down-regulated at the protein level but up-regulated at the RNA level. The deregulation of cellular gene expression by adenovirus is mediated at multiple levels and more complex than hitherto believed.
authors.affiliation: The Beijer Laboratory, Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Rudbeck Laboratory , 751 85 Uppsala, Sweden.
authors.forename: Hongxing
authors.initials: H
authors.lastname: Zhao
authors.affiliation: Department of Chemistry-BMC, Science for Life Laboratory, Analytical Chemistry, Box 599, Uppsala University , 751 24 Uppsala, Sweden.
authors.forename: Anne
authors.initials: A
authors.lastname: Konzer
authors.affiliation: Department of Chemistry-BMC, Science for Life Laboratory, Analytical Chemistry, Box 599, Uppsala University , 751 24 Uppsala, Sweden.
authors.forename: Jia
authors.initials: J
authors.lastname: Mi
authors.affiliation: Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, LaTrobe University , Melbourne, Victoria 3086, Australia.
authors.forename: Moashan
authors.initials: M
authors.lastname: Chen
authors.affiliation: The Beijer Laboratory, Department of Immunology, Genetics and Pathology, Science for Life Laboratory, Uppsala University, Rudbeck Laboratory , 751 85 Uppsala, Sweden.
authors.forename: Ulf
authors.initials: U
authors.lastname: Pettersson
authors.affiliation: Department of Chemistry-BMC, Science for Life Laboratory, Analytical Chemistry, Box 599, Uppsala University , 751 24 Uppsala, Sweden.
authors.forename: Sara Bergström
authors.identifier: 0000-0002-9510-3816
authors.initials: SB
authors.lastname: Lind
mesh_terms: D000256:Adenoviridae / Q000502:physiology*; D050260:Carbohydrate Metabolism / Q000235:genetics; D002460:Cell Line; D018076:DNA, Complementary / Q000032:analysis / Q000096:biosynthesis; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation; D063990:Gene Ontology; D059014:High-Throughput Nucleotide Sequencing; D006657:Histones / Q000235:genetics / Q000378:metabolism; D054884:Host-Pathogen Interactions; D006801:Humans; D007553:Isotope Labeling; D013058:Mass Spectrometry; D058977:Molecular Sequence Annotation; D058628:Myofibroblasts / Q000378:metabolism* / Q000821:virology; D020543:Proteome / Q000235:genetics* / Q000378:metabolism; D012313:RNA / Q000096:biosynthesis*; D012323:RNA Processing, Post-Transcriptional
chemical_list: D018076:DNA, Complementary; D006657:Histones; D020543:Proteome; D012313:RNA
keywords: Adenovirus type 2 infection; IMR-90 cells; RNA sequencing; SILAC; deregulation of host cell protein and RNA expression; mass spectrometry