title: Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection.
abstract: The closely related species Brassica rapa and B. oleracea encompass a wide range of vegetable, fodder and oil crops. The release of their reference genomes has facilitated resequencing collections of B. rapa and B. oleracea aiming to build their variome datasets. These data can be used to investigate the evolutionary relationships between and within the different species and the domestication of the crops, hereafter named morphotypes. These data can also be used in genetic studies aiming at the identification of genes that influence agronomic traits. We selected and resequenced 199 B. rapa and 119 B. oleracea accessions representing 12 and nine morphotypes, respectively. Based on these resequencing data, we obtained 2,249,473 and 3,852,169 high quality SNPs (single-nucleotide polymorphisms), as well as 303,617 and 417,004 InDels for the B. rapa and B. oleracea populations, respectively. The variome datasets of B. rapa and B. oleracea represent valuable resources to researchers working on evolution, domestication or breeding of Brassica vegetable crops.
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Feng
authors.identifier: 0000-0003-2982-9675
authors.initials: F
authors.lastname: Cheng
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Jian
authors.initials: J
authors.lastname: Wu
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Chengcheng
authors.initials: C
authors.lastname: Cai
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Lixia
authors.initials: L
authors.lastname: Fu
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Jianli
authors.initials: J
authors.lastname: Liang
authors.affiliation: Wageningen UR Plant Breeding, Wageningen University and Research centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.
authors.forename: Theo
authors.identifier: 0000-0002-2396-8570
authors.initials: T
authors.lastname: Borm
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Mu
authors.initials: M
authors.lastname: Zhuang
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Yangyong
authors.initials: Y
authors.lastname: Zhang
authors.affiliation: Beijing Academy of Agriculture and Foresty Science (BAAFS), Beijing Vegetable Research Center (BVRC), Beijing 10089, China.
authors.forename: Fenglan
authors.initials: F
authors.lastname: Zhang
authors.affiliation: Wageningen UR Plant Breeding, Wageningen University and Research centre, Droevendaalsesteeg 1, Wageningen 6708 PB, The Netherlands.
authors.forename: Guusje
authors.identifier: 0000-0002-2298-6849
authors.initials: G
authors.lastname: Bonnema
authors.affiliation: Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops of the Ministry of Agriculture, Sino-Dutch Joint Laboratory of Horticultural Genomics, Beijing 10081, China.
authors.forename: Xiaowu
authors.initials: X
authors.lastname: Wang
mesh_terms: D001937:Brassica / Q000235:genetics*; D029741:Brassica rapa / Q000235:genetics*; D019143:Evolution, Molecular; D018745:Genome, Plant; D017422:Sequence Analysis, DNA; D013045:Species Specificity