title: Rapid detection of Mycobacterium tuberculosis complex in sputum Samples using PURE TB-LAMP assay.
abstract: OBJECTIVE
  Lack of rapid and accurate diagnostic testing is a critical obstacle to global tuberculosis (TB) control. Sensitivity of sputum smear microscopy (SSM) is not optimal; however, it remains the most prevalent tool for TB confirmation in poor countries. As a part of passive case finding of TB detection, this study was conducted to determine the clinical performance of PURE TB-LAMP assay using liquid culture medium as the gold standard.
  
  
  METHODS
  Centre Antituberculeux de Yopougon is one of the 17 intermediate Tuberculosis centers in Côte d'Ivoire. A standardized questionnaire was submitted to patients with signs and symptoms consistent with tuberculosis by a trained caregiver. After obtaining signed consent forms, sputum samples were collected according to National TB Control Programme guidelines (spot-morning). SSM after Ziehl-Neelsen staining and TB-LAMP assay were blindly performed on the first sample. Samples transported to Institut Pasteur de Côte d'Ivoire were decontaminated according to the N-acetyl-L-Cystein method. In Mycobacteria Growth Indicator Tube (MGIT), 500mL of pellets were inoculated and incubated in the MGIT 960 system. MPT64 antigen was detected in positive cultures.
  
  
  RESULTS
  Of the 500 patients enrolled, 469 (232men and 239 women) patients were included. The mean ages of men and women were 36.9 (15-86) and 37.3 (15-37.3) years, respectively. There were 56 (12.2%) HIV-infected patients, including 14 women. Clinical isolates of M. tuberculosis complex were detected for 157 (33.5%) patients. Compared with culturing, the overall sensitivity and specificity of SSM were 86% (95% confidence interval [CI]=81-91) and 96% (95% CI=94-98), respectively. The overall sensitivity and specificity for TB-LAMP was 92% (95% CI=0.88-0.96) and 94% (95% CI=0.91-0.97), respectively. Positive likelihood ratios for TB-LAMP and SSM were 15.3 and 21.5, respectively, and negative likelihood ratios for TB-LAMP and SSM were 0.09 and 0.15, respectively. Among the 469 patients, active tuberculosis was detected using TB-LAMP assay and SSM in 162 (34.5%) and 147 (31.3%) patients, respectively.
  
  
  CONCLUSIONS
  For accurate diagnostic of pulmonary TB, TB-LAMP could be used as a tool of the first intention.
authors.affiliation: Laboratoire Nationale de Référence de la Tuberculose, Institut Pasteur de Côte d'Ivoire, Abidjan, Cote d'Ivoire. Electronic address: kouassinguessan@pasteur.ci.
authors.forename: K
authors.initials: K
authors.lastname: N'guessan
authors.affiliation: Service de Pneumologie CHU de Cocody, Abidjan, Cote d'Ivoire.
authors.forename: K
authors.initials: K
authors.lastname: Horo
authors.affiliation: Centre Antituberculeux de Yopougon, Abidjan, Cote d'Ivoire.
authors.forename: I
authors.initials: I
authors.lastname: Coulibaly
authors.affiliation: Laboratoire Nationale de Référence de la Tuberculose, Institut Pasteur de Côte d'Ivoire, Abidjan, Cote d'Ivoire.
authors.forename: J
authors.initials: J
authors.lastname: Adegbele
authors.affiliation: Centre Antituberculeux de Yopougon, Abidjan, Cote d'Ivoire.
authors.forename: N
authors.initials: N
authors.lastname: Kouame-Adjei
authors.affiliation: Laboratoire Nationale de Référence de la Tuberculose, Institut Pasteur de Côte d'Ivoire, Abidjan, Cote d'Ivoire.
authors.forename: H
authors.initials: H
authors.lastname: Seck-Angu
authors.affiliation: Laboratoire Nationale de Référence de la Tuberculose, Institut Pasteur de Côte d'Ivoire, Abidjan, Cote d'Ivoire.
authors.forename: A
authors.initials: A
authors.lastname: Guei
authors.affiliation: Programme National de Lutte contre la Tuberculose, Cote d'Ivoire.
authors.forename: J
authors.initials: J
authors.lastname: Kouakou
authors.affiliation: Laboratoire Nationale de Référence de la Tuberculose, Institut Pasteur de Côte d'Ivoire, Abidjan, Cote d'Ivoire.
authors.forename: M
authors.initials: M
authors.lastname: Dosso
keywords: Diagnosis; TB-LAMP assay; Tuberculosis; Ziehl–Neelsen staining