title: Proximity does not contribute to activity enhancement in the glucose oxidase-horseradish peroxidase cascade.
abstract: A proximity effect has been invoked to explain the enhanced activity of enzyme cascades on DNA scaffolds. Using the cascade reaction carried out by glucose oxidase and horseradish peroxidase as a model system, here we study the kinetics of the cascade reaction when the enzymes are free in solution, when they are conjugated to each other and when a competing enzyme is present. No proximity effect is found, which is in agreement with models predicting that the rapidly diffusing hydrogen peroxide intermediate is well mixed. We suggest that the reason for the activity enhancement of enzymes localized by DNA scaffolds is that the pH near the surface of the negatively charged DNA nanostructures is lower than that in the bulk solution, creating a more optimal pH environment for the anchored enzymes. Our findings challenge the notion of a proximity effect and provide new insights into the role of DNA scaffolds.
authors.affiliation: Department of Biomedical Engineering, Columbia University, New York, New York 10027, USA.
authors.forename: Yifei
authors.initials: Y
authors.lastname: Zhang
authors.affiliation: Department of Biomedical Engineering, Columbia University, New York, New York 10027, USA.
authors.forename: Stanislav
authors.initials: S
authors.lastname: Tsitkov
authors.affiliation: Department of Biomedical Engineering, Columbia University, New York, New York 10027, USA.
authors.forename: Henry
authors.identifier: 0000-0002-5617-606X
authors.initials: H
authors.lastname: Hess
mesh_terms: D002384:Catalysis; D004247:DNA / Q000737:chemistry / Q000378:metabolism; D004800:Enzymes, Immobilized / Q000737:chemistry / Q000378:metabolism; D005949:Glucose Oxidase / Q000737:chemistry / Q000378:metabolism*; D006735:Horseradish Peroxidase / Q000737:chemistry / Q000378:metabolism*; D006863:Hydrogen-Ion Concentration; D007700:Kinetics; D008954:Models, Biological; D008958:Models, Molecular; D049329:Nanostructures / Q000737:chemistry; D036103:Nanotechnology
chemical_list: D004800:Enzymes, Immobilized; D004247:DNA; D005949:Glucose Oxidase; D006735:Horseradish Peroxidase