title: Identified molecular mechanism of interaction between environmental risk factors and differential expression genes in cartilage of Kashin-Beck disease.
abstract: As environmental risk factors (ERFs) play an important role in the pathogenesis of Kashin-Beck disease (KBD), it is important to identify the interaction between ERFs and differentially expression genes (DEGs) in KBD. The environmental response genes (ERGs) were analyzed in cartilage of KBD in comparison to normal controls.We searched 5 English and 3 Chinese databases from inception to September 2015, to identify case-control studies that examined ERFs for KBD using integrative meta-analysis and systematic review. Total RNA was isolated from articular cartilage of KBD patients and healthy controls. Human whole genome microarray chip (Agilent) was used to analyze the amplified, labeled, and hybridized total RNA, and the validated microarray data were partially verified using real-time quantitative polymerase chain reaction (qRT-PCR). The ERGs were derived from the Comparative Toxicogenomics Database. The identified ERGs were subjected to KEGG pathway enrichment, biological process (BP), and interaction network analyses using the Database for Annotation, Visualization and Integrated Discovery (DAVID) v6.7, and STRING.The trace elements (selenium and iodine), vitamin E, and polluted grains (T-2 toxin/HT-2 toxin, deoxynivalenol, and nivalenol) were identified as the ERFs for KBD using meta-analysis and review. We identified 21 upregulated ERGs and 7 downregulated ERGs in cartilage with KBD compared with healthy controls, which involved in apoptosis, metabolism, and growth and development. KEGG pathway enrichment analysis found that 2 significant pathways were involved with PI3K-Akt signaling pathway and P53 signaling pathway, and gene ontology function analysis found 3 BPs involved with apoptosis, death, and cell death in KBD cartilage.According to previous results and our own research, we suggest that the trace element selenium and vitamin E induce PI3K-Akt signaling pathway and the mycotoxins (T-2 toxin/HT-2 toxin and DON) induce P53 signaling pathway, contributing to the development of KBD, and chondrocyte apoptosis and cell death.
authors.affiliation: Institute of Endemic Diseases, School of Public Health of Health Science Center, Xi'an Jiaotong University, Key Laboratory of Trace Elements and Endemic Diseases, National Health and Family Planning Commission, Xi'an Department of Orthopedics, Baoji People's Hospital, Baoji, China Department of Integrative Medical Biology, University of Umeå, Umeå, Sweden.
authors.forename: Fang-Fang
authors.initials: FF
authors.lastname: Yu
authors.forename: Yan-Xiang
authors.initials: YX
authors.lastname: Zhang
authors.forename: Lian-He
authors.initials: LH
authors.lastname: Zhang
authors.forename: Wen-Rong
authors.initials: WR
authors.lastname: Li
authors.forename: Xiong
authors.initials: X
authors.lastname: Guo
authors.forename: Mikko J
authors.initials: MJ
authors.lastname: Lammi
mesh_terms: D017209:Apoptosis; D002358:Cartilage, Articular / Q000737:chemistry / Q000378:metabolism; D016022:Case-Control Studies; D015536:Down-Regulation; D015870:Gene Expression; D020869:Gene Expression Profiling; D063990:Gene Ontology; D059647:Gene-Environment Interaction; D006801:Humans; D057767:Kashin-Beck Disease / Q000209:etiology* / Q000235:genetics; D051058:Oncogene Protein v-akt / Q000378:metabolism; D019869:Phosphatidylinositol 3-Kinases / Q000378:metabolism; D012307:Risk Factors; D015398:Signal Transduction; D016159:Tumor Suppressor Protein p53 / Q000378:metabolism; D015854:Up-Regulation
chemical_list: D016159:Tumor Suppressor Protein p53; D019869:Phosphatidylinositol 3-Kinases; D051058:Oncogene Protein v-akt