title: Molecular epidemiology of noroviruses detected in Vietnamese children with acute gastroenteritis from 2012 to 2015.
abstract: Noroviruses, an important cause of diarrhoea in humans, are genetically diverse. The recent norovirus seasons recorded the emergence of new recombinants of the capsid and polymerase genotypes, with a global dominance of GII.Pe_GII.4 Sydney 2012 and GII.P17_GII.17 in Asian countries. However, the number of papers reporting the distribution of both polymerase and capsid genotypes circulating among children is scarce, with none from Vietnam. This study described both the polymerase and capsid genotypes of noroviruses circulating in Vietnamese children using stool specimens obtained under the World Health Organization rotavirus surveillance programme from 2012 to 2015. Of 350 specimens tested, noroviruses were detected in 90 (28 %) of 319 inpatient specimens and in 9 (29 %) of 31 outpatient specimens. The polymerase and capsid genotype combinations of GII.Pe_GII.4 Sydney 2012 and GII.P21_GII.3 were co-dominant (51 and 24 %, respectively), both of which were recombinants, contributing to a high proportion (87 %) of recombinants among circulating noroviruses. GII.4 variants evolved in the same fashion in Vietnam as in other countries, with amino acid substitutions in the putative variant-specific epitopes of the protruding domain. Unlike neighbouring countries where the predominance of GII.P17_GII.17 was reported, only one GII.P17_GII.17 strain was detected from an outpatient in 2015 in Vietnam. In conclusion, a substantial burden due to norovirus gastroenteritis hospitalizations among Vietnamese children was associated with circulating co-dominant GII.Pe_GII.4 Sydney 2012 and GII.P21_GII.3 strains. Continued surveillance is necessary to monitor infection caused by GII.4 variants and that of GII.P17_GII.17 noroviruses in paediatric patients in Vietnam.
authors.affiliation: Department of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
authors.forename: T N
authors.initials: TN
authors.lastname: Hoa-Tran
authors.affiliation: Department of Molecular Epidemiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
authors.forename: O
authors.initials: O
authors.lastname: Nakagomi
authors.affiliation: Department of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
authors.forename: A T H
authors.initials: ATH
authors.lastname: Dao
authors.affiliation: Department of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
authors.forename: A T
authors.initials: AT
authors.lastname: Nguyen
authors.affiliation: Department of Molecular Epidemiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
authors.forename: C A
authors.initials: CA
authors.lastname: Agbemabiese
authors.affiliation: Department of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
authors.forename: H M
authors.initials: HM
authors.lastname: Vu
authors.affiliation: Department of Molecular Epidemiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki, Japan.
authors.forename: T
authors.initials: T
authors.lastname: Nakagomi
authors.affiliation: Department of Virology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
authors.forename: N T H
authors.initials: NTH
authors.lastname: Thanh
mesh_terms: D000208:Acute Disease; D017250:Caliciviridae Infections / Q000097:blood / Q000453:epidemiology*; D036022:Capsid Proteins / Q000235:genetics*; D002675:Child, Preschool; D003967:Diarrhea / Q000453:epidemiology* / Q000821:virology; D000939:Epitopes / Q000097:blood; D005759:Gastroenteritis / Q000453:epidemiology* / Q000821:virology; D014644:Genetic Variation; D005838:Genotype; D006760:Hospitalization; D006801:Humans; D007297:Inpatients; D017720:Molecular Epidemiology; D029322:Norovirus / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D010045:Outpatients; D010802:Phylogeny; D011487:Protein Conformation; D012621:Seasons; D013048:Specimen Handling; D014744:Vietnam / Q000453:epidemiology
chemical_list: D036022:Capsid Proteins; D000939:Epitopes