title: Ericoid Roots and Mycospheres Govern Plant-Specific Bacterial Communities in Boreal Forest Humus.
abstract: In this study, the bacterial populations of roots and mycospheres of the boreal pine forest ericoid plants, heather (Calluna vulgaris), bilberry (Vaccinium myrtillus), and lingonberry (Vaccinium vitis-idaea), were studied by qPCR and next-generation sequencing (NGS). All bacterial communities of mycosphere soils differed from soils uncolonized by mycorrhizal mycelia. Colonization by mycorrhizal hyphae increased the total number of bacterial 16S ribosomal DNA (rDNA) gene copies in the humus but decreased the number of different bacterial operational taxonomic units (OTUs). Nevertheless, ericoid roots and mycospheres supported numerous OTUs not present in uncolonized humus. Bacterial communities in bilberry mycospheres were surprisingly similar to those in pine mycospheres but not to bacterial communities in heather and lingonberry mycospheres. In contrast, bacterial communities of ericoid roots were more similar to each other than to those of pine roots. In all sample types, the relative abundances of bacterial sequences belonging to Alphaproteobacteria and Acidobacteria were higher than the sequences belonging to other classes. Soil samples contained more Actinobacteria, Deltaproteobacteria, Opitutae, and Planctomycetia, whereas Armatimonadia, Betaproteobacteria, Gammaproteobacteria, and Sphingobacteriia were more common to roots. All mycosphere soils and roots harbored bacteria unique to that particular habitat. Our study suggests that the habitation by ericoid plants increases the overall bacterial diversity of boreal forest soils.
authors.affiliation: Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, P.O. Box 56, 00014, Helsinki, FIN, Finland. sari.timonen@helsinki.fi.
authors.forename: Sari
authors.identifier: 0000-0001-9039-5648
authors.initials: S
authors.lastname: Timonen
authors.affiliation: Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, P.O. Box 56, 00014, Helsinki, FIN, Finland.
authors.forename: Hanna
authors.initials: H
authors.lastname: Sinkko
authors.affiliation: Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, P.O. Box 56, 00014, Helsinki, FIN, Finland.|Collaborative Innovation Center of Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, China.
authors.forename: Hui
authors.initials: H
authors.lastname: Sun
authors.affiliation: Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, P.O. Box 56, 00014, Helsinki, FIN, Finland.
authors.forename: Outi-Maaria
authors.initials: OM
authors.lastname: Sietiö
authors.affiliation: Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, P.O. Box 56, 00014, Helsinki, FIN, Finland.
authors.forename: Johanna M
authors.initials: JM
authors.lastname: Rinta-Kanto
authors.affiliation: Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, P.O. Box 56, 00014, Helsinki, FIN, Finland.
authors.forename: Heikki
authors.initials: H
authors.lastname: Kiheri
authors.affiliation: Department of Food and Environmental Sciences, Division of Microbiology and Biotechnology, University of Helsinki, P.O. Box 56, 00014, Helsinki, FIN, Finland.
authors.forename: Jussi
authors.initials: J
authors.lastname: Heinonsalo
mesh_terms: D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D001483:Base Sequence; D044822:Biodiversity; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D004275:DNA, Ribosomal / Q000235:genetics; D017753:Ecosystem; D005387:Finland; D065928:Forests; D059014:High-Throughput Nucleotide Sequencing / Q000379:methods; D059013:Microbial Consortia; D038821:Mycorrhizae / Q000235:genetics; D010802:Phylogeny; D028223:Pinus / Q000382:microbiology; D018517:Plant Roots / Q000382:microbiology*; D016133:Polymerase Chain Reaction; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D058441:Rhizosphere; D017422:Sequence Analysis, DNA; D012987:Soil / Q000737:chemistry*; D012988:Soil Microbiology; D066188:Taiga
chemical_list: D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D012336:RNA, Ribosomal, 16S; D012987:Soil
keywords: Bacteria; Boreal forest soil; High-throughput sequencing; Mycorrhizosphere; Mycosphere; Rhizosphere