title: Mathematical Modeling of Intestinal Iron Absorption Using Genetic Programming.
abstract: Iron is a trace metal, key for the development of living organisms. Its absorption process is complex and highly regulated at the transcriptional, translational and systemic levels. Recently, the internalization of the DMT1 transporter has been proposed as an additional regulatory mechanism at the intestinal level, associated to the mucosal block phenomenon. The short-term effect of iron exposure in apical uptake and initial absorption rates was studied in Caco-2 cells at different apical iron concentrations, using both an experimental approach and a mathematical modeling framework. This is the first report of short-term studies for this system. A non-linear behavior in the apical uptake dynamics was observed, which does not follow the classic saturation dynamics of traditional biochemical models. We propose a method for developing mathematical models for complex systems, based on a genetic programming algorithm. The algorithm is aimed at obtaining models with a high predictive capacity, and considers an additional parameter fitting stage and an additional Jackknife stage for estimating the generalization error. We developed a model for the iron uptake system with a higher predictive capacity than classic biochemical models. This was observed both with the apical uptake dataset used for generating the model and with an independent initial rates dataset used to test the predictive capacity of the model. The model obtained is a function of time and the initial apical iron concentration, with a linear component that captures the global tendency of the system, and a non-linear component that can be associated to the movement of DMT1 transporters. The model presented in this paper allows the detailed analysis, interpretation of experimental data, and identification of key relevant components for this complex biological process. This general method holds great potential for application to the elucidation of biological mechanisms and their key components in other complex systems.
authors.affiliation: Laboratory of Process Modeling and Distributed Computing, Department of Chemical Engineering and Biotechnology, University of Chile, Santiago, Chile.
authors.forename: Andrea
authors.initials: A
authors.lastname: Colins
authors.affiliation: Centre for Biotechnology and Bioengineering, Department of Chemical Engineering and Biotechnology, University of Chile, Santiago, Chile.
authors.forename: Ziomara P
authors.initials: ZP
authors.lastname: Gerdtzen
authors.affiliation: Iron and Biology of Aging Laboratory, Department of Biology, Faculty of Sciences, University of Chile, Santiago, Chile.
authors.forename: Marco T
authors.initials: MT
authors.lastname: Nuñez
authors.affiliation: Laboratory of Process Modeling and Distributed Computing, Department of Chemical Engineering and Biotechnology, University of Chile, Santiago, Chile.|Centre for Biotechnology and Bioengineering, Department of Chemical Engineering and Biotechnology, University of Chile, Santiago, Chile.
authors.forename: J Cristian
authors.initials: JC
authors.lastname: Salgado
mesh_terms: D000465:Algorithms; D000818:Animals; D001692:Biological Transport; D045744:Cell Line, Tumor; D065569:Gastrointestinal Absorption; D006801:Humans; D007413:Intestinal Mucosa / Q000378:metabolism*; D007501:Iron / Q000378:metabolism*; D007700:Kinetics; D008954:Models, Biological; D008957:Models, Genetic; D008962:Models, Theoretical; D015203:Reproducibility of Results
chemical_list: D007501:Iron