title: Lossless and lossy compression of quantitative phase images of red blood cells obtained by digital holographic imaging.
abstract: In this paper, we evaluate lossless and lossy compression techniques to compress quantitative phase images of red blood cells (RBCs) obtained by an off-axis digital holographic microscopy (DHM). The RBC phase images are numerically reconstructed from their digital holograms and are stored in 16-bit unsigned integer format. In the case of lossless compression, predictive coding of JPEG lossless (JPEG-LS), JPEG2000, and JP3D are evaluated, and compression ratio (CR) and complexity (compression time) are compared against each other. It turns out that JP2k can outperform other methods by having the best CR. In the lossy case, JP2k and JP3D with different CRs are examined. Because some data is lost in a lossy way, the degradation level is measured by comparing different morphological and biochemical parameters of RBC before and after compression. Morphological parameters are volume, surface area, RBC diameter, sphericity index, and the biochemical cell parameter is mean corpuscular hemoglobin (MCH). Experimental results show that JP2k outperforms JP3D not only in terms of mean square error (MSE) when CR increases, but also in compression time in the lossy compression way. In addition, our compression results with both algorithms demonstrate that with high CR values the three-dimensional profile of RBC can be preserved and morphological and biochemical parameters can still be within the range of reported values.
authors.forename: Keyvan
authors.initials: K
authors.lastname: Jaferzadeh
authors.forename: Samaneh
authors.initials: S
authors.lastname: Gholami
authors.forename: Inkyu
authors.initials: I
authors.lastname: Moon
mesh_terms: D000465:Algorithms; D044962:Data Compression / Q000379:methods; D004912:Erythrocytes / Q000166:cytology*; D006696:Holography / Q000379:methods*; D006801:Humans