title: DFT study of the molecular and crystal structure and vibrational analysis of cisplatin.
abstract: DFT and periodic-DFT (PAW-PBE method, code VASP) calculations have been performed to study the structural and vibrational characteristics of cis-diamminedichloroplatinum(II) (cisplatin) at molecular and outside molecular level. To estimate the effect of the intermolecular interactions in crystal on the structural and vibrational properties of cisplatin, three theoretical models are considered in the present study: monomer (isolated molecule), hydrogen bonded dimer and periodic solid state structures. The work focused on the role of the theoretical models for correct modeling and prediction of geometrical and vibrational parameters of cisplatin. It has been found that the elaborate three-dimensional intermolecular hydrogen bonding network in the crystalline cisplatin significantly influences the structural and vibrational pattern of cisplatin and therefore the isolated cisplatin molecule is not the correct computational model regardless of the theoretical level used. To account for the whole intermolecular hydrogen bonding network in direction of both a and c axis and for more reliable calculations of structural and vibrational parameters periodic DFT calculations were carried out in the full crystalline periodic environment with the known lattice parameters for each cisplatin polymorph phase. The model calculations performed both at molecular level and for the periodic structures of alpha and beta cisplatin polymorph forms revealed the decisive role of the extended theoretical model for reliable prediction of the structural and vibrational characteristics of cisplatin. The powder diffraction pattern and the calculated IR and Raman spectra predicted beta polymorph form of our cisplatin sample freshly synthesized for the purposes of the present study using the Dhara's method. The various rotamers realized in the polymorph forms of cisplatin were explained by the low population of the large number of rotamers in solution as well as with the high rotamer interconversion rate due to the low energy barrier.
authors.affiliation: Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, 11, Acad. G. Bonchev Str., 1113 Sofia, Bulgaria. Electronic address: ivelina@svr.igic.bas.bg.
authors.forename: I
authors.initials: I
authors.lastname: Georgieva
authors.affiliation: Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, 11, Acad. G. Bonchev Str., 1113 Sofia, Bulgaria.
authors.forename: N
authors.initials: N
authors.lastname: Trendafilova
authors.affiliation: Institute of Molecular Biology, Bulgarian Academy of Sciences, 21, Acad. G. Bonchev Str., 1113 Sofia, Bulgaria.
authors.forename: N
authors.initials: N
authors.lastname: Dodoff
authors.affiliation: Institute of General and Inorganic Chemistry, Bulgarian Academy of Sciences, 11, Acad. G. Bonchev Str., 1113 Sofia, Bulgaria.
authors.forename: D
authors.initials: D
authors.lastname: Kovacheva
mesh_terms: D002945:Cisplatin / Q000737:chemistry*; D003460:Crystallization; D018360:Crystallography, X-Ray; D019281:Dimerization; D005740:Gases / Q000737:chemistry; D008958:Models, Molecular; D008968:Molecular Conformation; D011789:Quantum Theory; D012996:Solutions; D017550:Spectroscopy, Fourier Transform Infrared; D013059:Spectrum Analysis, Raman; D014732:Vibration
chemical_list: D005740:Gases; D012996:Solutions; D002945:Cisplatin
keywords: Alpha- and beta cisplatin; IR and Raman spectra; Modeling; Periodic DFT