title: LipidPioneer : A Comprehensive User-Generated Exact Mass Template for Lipidomics.
abstract: Lipidomics, the comprehensive measurement of lipid species in a biological system, has promising potential in biomarker discovery and disease etiology elucidation. Advances in chromatographic separation, mass spectrometric techniques, and novel substrate applications continue to expand the number of lipid species observed. The total number and type of lipid species detected in a given sample are generally indicative of the sample matrix examined (e.g., serum, plasma, cells, bacteria, tissue, etc.). Current exact mass lipid libraries are static and represent the most commonly analyzed matrices. It is common practice for users to manually curate their own lists of lipid species and adduct masses; however, this process is time-consuming. LipidPioneer, an interactive template, can be used to generate exact masses and molecular formulas of lipid species that may be encountered in the mass spectrometric analysis of lipid profiles. Over 60 lipid classes are present in the LipidPioneer template and include several unique lipid species, such as ether-linked lipids and lipid oxidation products. In the template, users can add any fatty acyl constituents without limitation in the number of carbons or degrees of unsaturation. LipidPioneer accepts naming using the lipid class level (sum composition) and the LIPID MAPS notation for fatty acyl structure level. In addition to lipid identification, user-generated lipid m/z values can be used to develop inclusion lists for targeted fragmentation experiments. Resulting lipid names and m/z values can be imported into software such as MZmine or Compound Discoverer to automate exact mass searching and isotopic pattern matching across experimental data. Graphical Abstract ᅟ.
authors.affiliation: National Institute of Standards and Technology, Hollings Marine Laboratory, 331 Ft. Johnson Road, Charleston, SC, 29412, USA.
authors.forename: Candice Z
authors.initials: CZ
authors.lastname: Ulmer
authors.affiliation: Department of Chemistry, University of Florida, 214 Leigh Hall, Gainesville, FL, 32611, USA.
authors.forename: Jeremy P
authors.initials: JP
authors.lastname: Koelmel
authors.affiliation: National Institute of Standards and Technology, Hollings Marine Laboratory, 331 Ft. Johnson Road, Charleston, SC, 29412, USA.
authors.forename: Jared M
authors.initials: JM
authors.lastname: Ragland
authors.affiliation: Department of Pathology, University of Florida, 1395 Center Dr, Gainesville, FL, 32610, USA.
authors.forename: Timothy J
authors.initials: TJ
authors.lastname: Garrett
authors.affiliation: National Institute of Standards and Technology, Hollings Marine Laboratory, 331 Ft. Johnson Road, Charleston, SC, 29412, USA. john.bowden@nist.gov.
authors.forename: John A
authors.initials: JA
authors.lastname: Bowden
mesh_terms: D015496:CD4-Positive T-Lymphocytes / Q000378:metabolism; D062126:Databases, Chemical; D006801:Humans; D019169:Jurkat Cells / Q000378:metabolism; D008055:Lipids / Q000032:analysis* / Q000737:chemistry; D012984:Software; D053719:Tandem Mass Spectrometry / Q000379:methods*; D057188:Workflow
chemical_list: D008055:Lipids
keywords: Exact mass template; High resolution mass spectrometry; Jurkat T-lymphocyte cells; LipidPioneer; Lipidomics