title: Microfluidic-Based Bacteria Isolation from Whole Blood for Diagnostics of Blood Stream Infection.
abstract: Bacterial blood stream infection (BSI) potentially leads to life-threatening clinical conditions and medical emergencies such as severe sepsis, septic shock, and multi organ failure syndrome. Blood culturing is currently the gold standard for the identification of microorganisms and, although it has been automated over the decade, the process still requires 24-72 h to complete. This long turnaround time, especially for the identification of antimicrobial resistance, is driving the development of rapid molecular diagnostic methods. Rapid detection of microbial pathogens in blood related to bloodstream infections will allow the clinician to decide on or adjust the antimicrobial therapy potentially reducing the morbidity, mortality, and economic burden associated with BSI. For molecular-based methods, there is a lot to gain from an improved and straightforward method for isolation of bacteria from whole blood for downstream processing.We describe a microfluidic-based sample-preparation approach that rapidly and selectively lyses all blood cells while it extracts intact bacteria for downstream analysis. Whole blood is exposed to a mild detergent, which lyses most blood cells, and then to osmotic shock using deionized water, which eliminates the remaining white blood cells. The recovered bacteria are 100 % viable, which opens up possibilities for performing drug susceptibility tests and for nucleic-acid-based molecular identification.
authors.affiliation: Science for Life Laboratory, Division of Proteomics and Nanobiotechnology, KTH Royal Institute of Technology, PO Box 1031, 17121, Solna, Stockholm, Sweden.
authors.forename: Sergey
authors.initials: S
authors.lastname: Zelenin
authors.affiliation: Science for Life Laboratory, Division of Proteomics and Nanobiotechnology, KTH Royal Institute of Technology, PO Box 1031, 17121, Solna, Stockholm, Sweden.
authors.forename: Harisha
authors.initials: H
authors.lastname: Ramachandraiah
authors.affiliation: Science for Life Laboratory, Division of Proteomics and Nanobiotechnology, KTH Royal Institute of Technology, PO Box 1031, 17121, Solna, Stockholm, Sweden.
authors.forename: Asim
authors.initials: A
authors.lastname: Faridi
authors.affiliation: Science for Life Laboratory, Division of Proteomics and Nanobiotechnology, KTH Royal Institute of Technology, PO Box 1031, 17121, Solna, Stockholm, Sweden. aman.russom@scilifelab.se.
authors.forename: Aman
authors.initials: A
authors.lastname: Russom
mesh_terms: D016470:Bacteremia / Q000175:diagnosis* / Q000382:microbiology; D001419:Bacteria / Q000235:genetics; D004867:Equipment Design; D005434:Flow Cytometry / Q000379:methods; D006801:Humans; D046210:Microfluidic Analytical Techniques / Q000295:instrumentation / Q000379:methods*; D044085:Microfluidics / Q000295:instrumentation / Q000379:methods*; D025202:Molecular Diagnostic Techniques / Q000295:instrumentation / Q000379:methods*; D019095:Point-of-Care Systems
keywords: Bacteremia; Blood stream infection; Diagnostic; Microfluidics; Pathogens; Point-of-care diagnostics; Sepsis