title: Characterization of the Transcriptome and Gene Expression of Brain Tissue in Sevenband Grouper (Hyporthodus septemfasciatus) in Response to NNV Infection.
abstract: Grouper is one of the favorite sea food resources in Southeast Asia. However, the outbreaks of the viral nervous necrosis (VNN) disease due to nervous necrosis virus (NNV) infection have caused mass mortality of grouper larvae. Many aqua-farms have suffered substantial financial loss due to the occurrence of VNN. To better understand the infection mechanism of NNV, we performed the transcriptome analysis of sevenband grouper brain tissue, the main target of NNV infection. After artificial NNV challenge, transcriptome of brain tissues of sevenband grouper was subjected to next generation sequencing (NGS) using an Illumina Hi-seq 2500 system. Both mRNAs from pooled samples of mock and NNV-infected sevenband grouper brains were sequenced. Clean reads of mock and NNV-infected samples were de novo assembled and obtained 104,348 unigenes. In addition, 628 differentially expressed genes (DEGs) in response to NNV infection were identified. This result could provide critical information not only for the identification of genes involved in NNV infection, but for the understanding of the response of sevenband groupers to NNV infection.
authors.affiliation: Department of Aqualife Medicine, College of Fisheries and Ocean Science, Chonnam National University, Yeosu 550-749, Korea. jongoh.kim77@gmail.com.
authors.forename: Jong-Oh
authors.initials: JO
authors.lastname: Kim
authors.affiliation: Department of Aqualife Medicine, College of Fisheries and Ocean Science, Chonnam National University, Yeosu 550-749, Korea. hoy0924@naver.com.
authors.forename: Jae-Ok
authors.initials: JO
authors.lastname: Kim
authors.affiliation: Department of Aqualife Medicine, College of Fisheries and Ocean Science, Chonnam National University, Yeosu 550-749, Korea. wisky@jnu.ac.kr.
authors.forename: Wi-Sik
authors.initials: WS
authors.lastname: Kim
authors.affiliation: Department of Aqualife Medicine, College of Fisheries and Ocean Science, Chonnam National University, Yeosu 550-749, Korea. ohmj@jnu.ac.kr.
authors.forename: Myung-Joo
authors.initials: MJ
authors.lastname: Oh
keywords: differential expressed genes (DEGs); nervous necrosis virus (NNV); next generation sequencing (NGS); sevenband grouper; transcriptome