title: Spatial Clockwork Recurrent Neural Network for Muscle Perimysium Segmentation.
abstract: Accurate segmentation of perimysium plays an important role in early diagnosis of many muscle diseases because many diseases contain different perimysium inflammation. However, it remains as a challenging task due to the complex appearance of the perymisum morphology and its ambiguity to the background area. The muscle perimysium also exhibits strong structure spanned in the entire tissue, which makes it difficult for current local patch-based methods to capture this long-range context information. In this paper, we propose a novel spatial clockwork recurrent neural network (spatial CW-RNN) to address those issues. Specifically, we split the entire image into a set of non-overlapping image patches, and the semantic dependencies among them are modeled by the proposed spatial CW-RNN. Our method directly takes the 2D structure of the image into consideration and is capable of encoding the context information of the entire image into the local representation of each patch. Meanwhile, we leverage on the structured regression to assign one prediction mask rather than a single class label to each local patch, which enables both efficient training and testing. We extensively test our method for perimysium segmentation using digitized muscle microscopy images. Experimental results demonstrate the superiority of the novel spatial CW-RNN over other existing state of the arts.
authors.affiliation: J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, FL 32611, USA.
authors.forename: Yuanpu
authors.initials: Y
authors.lastname: Xie
authors.affiliation: Department of Computer and Information Science and Engineering, University of Florida, FL 32611, USA.
authors.forename: Zizhao
authors.initials: Z
authors.lastname: Zhang
authors.affiliation: Department of Electrical and Computer Engineering, University of Florida, FL 32611, USA.
authors.forename: Manish
authors.initials: M
authors.lastname: Sapkota
authors.affiliation: J. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida, FL 32611, USA.
authors.forename: Lin
authors.initials: L
authors.lastname: Yang
mesh_terms: D000465:Algorithms; D006801:Humans; D018485:Muscle Fibers, Skeletal / Q000648:ultrastructure; D018482:Muscle, Skeletal / Q000648:ultrastructure*; D016571:Neural Networks, Computer; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity