title: The Tetraspanin-Associated Uroplakins Family (UPK2/3) Is Evolutionarily Related to PTPRQ, a Phosphotyrosine Phosphatase Receptor.
abstract: Uroplakins are a widespread group of vertebrate integral membrane proteins that belong to two different families: UPK1a and UPK1b belong to the large tetraspanin (TSPAN) gene family, and UPK3a, UPK3b, UPK3c, UPK3d, UPK2a and UPK2b form a family of their own, the UPK2/3 tetraspanin-associated family. In a previous study, we reported that uroplakins first appeared in vertebrates, and that uroplakin tetraspanins (UPK1a and UPK1b) should have originated by duplication of an ancestor tetraspanin gene. However, the evolutionary origin of the UPK2/3 family remains unclear. In this study, we provide evidence that the UPK2/3 family originated by gene duplication and domain loss from a protoPTPRQ-like basal deuterostome gene. PTPRQs are members of the subtype R3 tyrosine phosphatase receptor (R3 PTPR) family, which are characterized by having a unique modular composition of extracellular fibronectin (FN3) repeats, a transmembrane helix, and a single intra-cytoplasmic phosphotyrosine phophatase (PTP) domain. Our assumption of a deuterostome protoPTPRQ-like gene as an ancestor of the UPK2/3 family by gene duplication and loss of its PTP and fibronectin (FN3) domains, excluding the one closest to the transmembrane helix, is based on the following: (i) phylogenetic analyses, (ii) the existence of an identical intron/exon gene pattern between UPK2/3 and the corresponding genetic region in R3 PTPRs, (iii) the conservation of cysteine patterns and protein motifs between UPK2/3 and PTPRQ proteins and, (iv) the existence in tunicates, the closest organisms to vertebrates, of two sequences related to PTPRQ; one with the full subtype R3 modular characteristic and another without the PTP domain but with a short cytoplasmic tail with some sequence similarity to that of UPK3a. This finding will facilitate further studies on the structure and function of these important proteins with implications in human diseases.
authors.affiliation: Research Unit, Hospital Universitari de Tarragona Joan XXIII, Institut d'Investigació Sanitària Pere Virgili, Universitat Rovira i Virgili, Tarragona, Spain.
authors.forename: Javier U
authors.initials: JU
authors.lastname: Chicote
authors.affiliation: Sackler Institute for Comparative Genomics, American Museum of Natural History, New York, New York, United States of America.
authors.forename: Rob
authors.initials: R
authors.lastname: DeSalle
authors.affiliation: Department of Urology, Hospital Universitari de Tarragona Joan XXIII, Institut d'Investigació Sanitària Pere Virgili, Universitat Rovira i Virgili, Tarragona, Spain.
authors.forename: José
authors.initials: J
authors.lastname: Segarra
authors.affiliation: Departments of Cell Biology, Dermatology, Biochemistry and Molecular Pharmacology, and Urology, New York University School of Medicine, New York, New York, United States of America.
authors.forename: Tung-Tien
authors.initials: TT
authors.lastname: Sun
authors.affiliation: Research Unit, Hospital Universitari de Tarragona Joan XXIII, Institut d'Investigació Sanitària Pere Virgili, Universitat Rovira i Virgili, Tarragona, Spain.
authors.forename: Antonio
authors.initials: A
authors.lastname: García-España
mesh_terms: D000595:Amino Acid Sequence / Q000235:genetics; D000818:Animals; D057225:Data Mining; D030541:Databases, Genetic; D019143:Evolution, Molecular; D005353:Fibronectins / Q000235:genetics; D020440:Gene Duplication / Q000235:genetics*; D006801:Humans; D051379:Mice; D010802:Phylogeny; D000072417:Protein Domains / Q000235:genetics*; D054631:Receptor-Like Protein Tyrosine Phosphatases, Class 3 / Q000235:genetics*; D060170:Uroplakin II / Q000235:genetics*; D060171:Uroplakin III / Q000235:genetics*
chemical_list: D005353:Fibronectins; D060170:Uroplakin II; D060171:Uroplakin III; D054631:Receptor-Like Protein Tyrosine Phosphatases, Class 3