title: Development of amino functionalized carbon coated magnetic nanoparticles and their application to electrochemical detection of hybridization of nucleic acids.
abstract: In our study, the development of amino functionalized carbon coated magnetic nanoparticles (NH2-CC-MNPs) and their usage for electrochemical detection of hybridization of nucleic acids have been aimed. Firstly, NH2-CC-MNPs were prepared by coating of pristine Fe3O4nanoparticles with two layers via caramelization and silanization processes respectively. After the morphological characterization with scanning electron microscopy (SEM) it was seen that NH2-CC-MNPs was spherical shaped and in 28nm sized. Investigation of chemical composition with the help of scanning electron microscopy/energy dispersive X-ray spectroscopy (SEM/EDX) and fourier transform infrared spectroscopy (FTIR) was showed incorporation of carbon and APTES to the structure of NH2-CC-MNPs. Magnetic property of NH2-CC-MNPs after two layered coatings was demonstrated with electron spin resonance (ESR) technique and g factor was calculated as 2.6. In the second part of this study, optimization studies have carried out onto the surface of NH2-CC-MNPs prepared in saltless phosphate-tween 20 buffer (PBTw) for the analysis of DNA hybridization. The thiol linked DNA probe sequence representing to the Hepatitis B virus (HBV) concentration, target DNA sequence concentration, the most productive hybridization time and the selection of the nanoparticle surfaces have been researched. The electrochemical detection of DNA hybridization was investigated using PGE in combination with differential pulse voltammetry (DPV) technique by measuring the guanine oxidation signal. The detection limit was calculated in the linear target DNA concentration range of 5-25µg/mL and it was found to be 1.15µg/mL (20pmol in 110µL solution). It has been intended to be more reproducible, more sensitive and faster results with developed biosensor technology.
authors.affiliation: Department of Analytical Chemistry, Faculty of Pharmacy, Ege University, Bornova, 35100 Izmir, Turkey; Department of Biochemistry, Faculty of Science, Ege University, Bornova, 35100 Izmir, Turkey.
authors.forename: Cansu
authors.initials: C
authors.lastname: Altay
authors.affiliation: Department of Biochemistry, Faculty of Science, Ege University, Bornova, 35100 Izmir, Turkey.
authors.forename: R Hilal
authors.initials: RH
authors.lastname: Senay
authors.affiliation: Department of Analytical Chemistry, Faculty of Pharmacy, Ege University, Bornova, 35100 Izmir, Turkey.
authors.forename: Ece
authors.initials: E
authors.lastname: Eksin
authors.affiliation: Department of Analytical Chemistry, Faculty of Pharmacy, Ege University, Bornova, 35100 Izmir, Turkey.
authors.forename: Gulsah
authors.initials: G
authors.lastname: Congur
authors.affiliation: Department of Analytical Chemistry, Faculty of Pharmacy, Ege University, Bornova, 35100 Izmir, Turkey. Electronic address: arzum.erdem@ege.edu.tr.
authors.forename: Arzum
authors.initials: A
authors.lastname: Erdem
authors.affiliation: Department of Biochemistry, Faculty of Science, Ege University, Bornova, 35100 Izmir, Turkey. Electronic address: sinan.akgol@ege.edu.tr.
authors.forename: Sinan
authors.initials: S
authors.lastname: Akgol
mesh_terms: D002244:Carbon / Q000737:chemistry*; D004247:DNA / Q000737:chemistry*; D004563:Electrochemistry / Q000295:instrumentation*; D004566:Electrodes; D006147:Guanine / Q000737:chemistry; D058185:Magnetite Nanoparticles / Q000737:chemistry*; D036103:Nanotechnology; D009693:Nucleic Acid Hybridization
chemical_list: D058185:Magnetite Nanoparticles; D006147:Guanine; D002244:Carbon; D004247:DNA
keywords: Amino functionalized magnetic nanoparticles; Differential pulse voltammetry; Disposable graphite electrode; Electrochemical biosensor; HBV DNA