title: Using Network Extracted Ontologies to Identify Novel Genes with Roles in Appressorium Development in the Rice Blast Fungus Magnaporthe oryzae.
abstract: Magnaporthe oryzaeis the causal agent of rice blast disease, the most important infection of rice worldwide. Half the world's population depends on rice for its primary caloric intake and, as such, rice blast poses a serious threat to food security. The stages ofM. oryzaeinfection are well defined, with the formation of an appressorium, a cell type that allows penetration of the plant cuticle, particularly well studied. However, many of the key pathways and genes involved in this disease stage are yet to be identified. In this study, I have used network-extracted ontologies (NeXOs), hierarchical structures inferred from RNA-Seq data, to identify pathways involved in appressorium development, which in turn highlights novel genes with potential roles in this process. This study illustrates the use of NeXOs for pathway identification from large-scale genomics data and also identifies novel genes with potential roles in disease. The methods presented here will be useful to study disease processes in other pathogenic species and these data represent predictions of novel targets for intervention inM. oryzae.
authors.affiliation: Wellcome Trust Centre for Biomedical Modelling and Analysis, Living Systems Institute, University of Exeter, Stocker Road, Exeter, EX4 4QD, UK. r.ames@exeter.ac.uk.
authors.forename: Ryan M
authors.initials: RM
authors.lastname: Ames
keywords: Magnaporthe oryzae; RNA-Seq; fungal pathogen; gene expression; network; plant pathogen; rice blast