title: [Phylogenetic analysis of envelope gene of dengue virus serotype 2 in Guangzhou, 2001-2015].
abstract: Objective:To investigate the molecular characteristics of dengue virus serotype 2 (DENV2) in Guangzhou during 2001-2015, and analyze the E gene of the strains isolated, the phylogenetic tree and molecular clock were constructed to know about the evolution of the strains.Methods:The serum samples of the patients were detected by real time PCR, and positive samples were used to isolate dengue virus by using C6/36 cells. The E gene of the isolated strains were sequenced. The phylogenetic tree was constructed by using software Mega 4.0, and the molecular clock was drawn by using software BEASTv1.8.2.Results:Twenty-six dengue virus strains were isolated between 2001 and 2015. They were all clustered into 2 genotypes, i.e. cosmopolitan genotype and Asian genotype Ⅰ. The strains isolated in Guangzhou shared high homology with Southeast Asian strains. The cosmopolitan genotype was divided into 2 sub-genotype at about 46 and 35 years ago. The substitution rate of dengue virus serotype 2 in Guangzhou was 7.1 × 10(-4) per year per site.Conclusions:There were close relationship between the Guangzhou strains and Southeast Asian strains. Guangzhou was at high risk of imported dengue fever, outbreak of dengue hemorrhagic fever and dengue shock syndrome. There might be two ways of introduction of cosmopolitan genotype. The substitution rate of the strains in Guangzhou was similar to that in the neighbor countries.
authors.affiliation: Disinfection Department, Guangzhou Center for Disease Control and Prevention, Guangzhou 510440, China.
authors.forename: Y
authors.initials: Y
authors.lastname: Liu
authors.affiliation: Virus Department, Guangzhou Center for Disease Control and Prevention, Guangzhou 510440, China.
authors.forename: L Y
authors.initials: LY
authors.lastname: Jiang
authors.affiliation: Disinfection Department, Guangzhou Center for Disease Control and Prevention, Guangzhou 510440, China.
authors.forename: L
authors.initials: L
authors.lastname: Luo
authors.affiliation: Virus Department, Guangzhou Center for Disease Control and Prevention, Guangzhou 510440, China.
authors.forename: Y M
authors.initials: YM
authors.lastname: Cao
authors.affiliation: Epidemiology Department, Guangzhou Center for Disease Control and Prevention, Guangzhou 510440, China.
authors.forename: Q L
authors.initials: QL
authors.lastname: Jing
authors.affiliation: Epidemiology Department, Guangzhou Center for Disease Control and Prevention, Guangzhou 510440, China.
authors.forename: Z C
authors.initials: ZC
authors.lastname: Yang
mesh_terms: D001483:Base Sequence; D002681:China / Q000453:epidemiology; D003715:Dengue / Q000453:epidemiology* / Q000821:virology; D003716:Dengue Virus / Q000235:genetics* / Q000302:isolation & purification; D004196:Disease Outbreaks; D019143:Evolution, Molecular; D015752:Genes, env; D005838:Genotype; D006801:Humans; D017720:Molecular Epidemiology; D010802:Phylogeny; D060888:Real-Time Polymerase Chain Reaction; D065288:Serogroup; D012984:Software; D014759:Viral Envelope Proteins / Q000235:genetics*
chemical_list: D014759:Viral Envelope Proteins
keywords: Dengue virus; Envelope gene; Molecular evolution