title: Data on gut metagenomes of the patients withHelicobacter pyloriinfection before and after the antibiotic therapy.
abstract: Antibiotic therapy can lead to the disruption of gut microbiota community with possible negative outcomes for human health. One of the diseases for which the treatment scheme commonly included antibiotic intake isHelicobacter pyloriinfection. The changes in taxonomic and functional composition of microbiota in patients can be assessed using "shotgun" metagenomic sequencing. Ten stool samples were collected from 4 patients withHelicobacter pyloriinfection before and directly after theH. pylorieradication course. Additionally, for two of the subjects, the samples were collected 1 month after the end of the treatment. The samples were subject to "shotgun" (whole-genome) metagenomic sequencing using Illumina HiSeq platform. The reads are deposited in the ENA (project ID: PRJEB18265).
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia.
authors.forename: Oksana E
authors.initials: OE
authors.lastname: Glushchenko
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia; Moscow Institute of Physics and Technology, Institutskiy per. 9, Dolgoprudny, Moscow Region 141700, Russia.
authors.forename: Andrei E
authors.initials: AE
authors.lastname: Samoilov
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia.
authors.forename: Evgenii I
authors.initials: EI
authors.lastname: Olekhnovich
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia.
authors.forename: Boris A
authors.initials: BA
authors.lastname: Kovarsky
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia; Moscow Institute of Physics and Technology, Institutskiy per. 9, Dolgoprudny, Moscow Region 141700, Russia.
authors.forename: Alexander V
authors.initials: AV
authors.lastname: Tyakht
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia; Moscow Institute of Physics and Technology, Institutskiy per. 9, Dolgoprudny, Moscow Region 141700, Russia.
authors.forename: Alexander V
authors.initials: AV
authors.lastname: Pavlenko
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia.
authors.forename: Vlad V
authors.initials: VV
authors.lastname: Babenko
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia.
authors.forename: Andrei K
authors.initials: AK
authors.lastname: Larin
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia; Moscow Institute of Physics and Technology, Institutskiy per. 9, Dolgoprudny, Moscow Region 141700, Russia.
authors.forename: Elena S
authors.initials: ES
authors.lastname: Kostryukova
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia.
authors.forename: Maja V
authors.initials: MV
authors.lastname: Malakhova
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia.
authors.forename: Elena N
authors.initials: EN
authors.lastname: Ilina
authors.affiliation: Kazan State Medical University, Butlerova 49, Kazan 420012, Russia.
authors.forename: Rustem A
authors.initials: RA
authors.lastname: Abdulkhakov
authors.affiliation: Kazan Federal University, Kremlyovskaya 18, Kazan 420008, Russia.
authors.forename: Dilyara I
authors.initials: DI
authors.lastname: Safina
authors.affiliation: Kazan Federal University, Kremlyovskaya 18, Kazan 420008, Russia.
authors.forename: Tatiana V
authors.initials: TV
authors.lastname: Grigoryeva
authors.affiliation: Kazan State Medical University, Butlerova 49, Kazan 420012, Russia; Kazan Federal University, Kremlyovskaya 18, Kazan 420008, Russia.
authors.forename: Sayar R
authors.initials: SR
authors.lastname: Abdulkhakov
authors.affiliation: Federal Research and Clinical Centre of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, Moscow 119435, Russia; Moscow Institute of Physics and Technology, Institutskiy per. 9, Dolgoprudny, Moscow Region 141700, Russia.
authors.forename: Vadim M
authors.initials: VM
authors.lastname: Govorun
keywords: Antibiotic therapy; Gut microbiota; Helicobacter pylori; Metagenome