Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms.
Pathway Inspector is an easy-to-use web application helping researchers to find patterns of expression in complex RNAseq experiments. The tool combines two standard approaches for RNAseq analysis: the identification of differentially expressed genes and a topology-based analysis of enriched pathways. Pathway Inspector is equipped with ad hoc interactive graphical interfaces simplifying the discovery of modulated pathways and the integration of the differentially expressed genes in the corresponding pathway topology.



Pathway Inspector is available at the website http://admiral.fmach.it/PI and has been developed in Python, making use of the Django Web Framework.



Contact:paolo.fontana@fmach.it
Research and Innovation Center, Edmund Mach Foundation, 38010 S. Michele all'Adige, Italy.
Luca
L
Bianco
Research and Innovation Center, Edmund Mach Foundation, 38010 S. Michele all'Adige, Italy.
Samantha
S
Riccadonna
Department of Molecular Medicine.
Enrico
E
Lavezzo
Department of Molecular Medicine.
Marco
M
Falda
Department of Biology, University of Padova, 35131 Padova, Italy.
Elide
E
Formentin
Research and Innovation Center, Edmund Mach Foundation, 38010 S. Michele all'Adige, Italy.
Duccio
D
Cavalieri
Department of Molecular Medicine.
Stefano
S
Toppo
Research and Innovation Center, Edmund Mach Foundation, 38010 S. Michele all'Adige, Italy.
Paolo
P
Fontana
D019295:Computational Biology / Q000379:methods; D020869:Gene Expression Profiling / Q000379:methods*; D017423:Sequence Analysis, RNA / Q000379:methods*; D012984:Software