An Analysis of Single Nucleotide Substitution in Genetic Codons - Probabilities and Outcomes.
BACKGROUND
Single nucleotide substitutions (SNS) in genetic codon are of prime importance due to their ability to alter an amino acid sequence as a result. Given the nature of genetic code, any SNS is expected to change the protein sequence randomly into any of the 64 possible codons. In this paper, we present a theoretical analysis of how single nucleotide substitutions in genetic codon may affect resulting amino acid residue and what is the most likely amino acid that will get selected as a result.


METHODS
A probability matrix was developed showing possible changes and routes likely being followed as a result of base substitution mutation causing changes at the translational level for the amino acid being encoded.


RESULTS
We observe that in event of single base pair substitution in a given amino acid; a chosen set of amino acids is theoretically more probable to be resulted suggesting a directional rather than a random change. This study also indicates that for a given amino acid coded by a number of synonymous codons, all synonymous codons will result into same list of amino acids in case of all possible SNS at three positions.


CONCLUSIONS
The present work has resulted into development of a theoretical probability matrix which can be used to predict changes in amino acid residues in a protein sequence caused by single base substitutions.
Department of Computer Science, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi , India.
Tariq
T
Abdullah
Department of Computer Science, Faculty of Natural Sciences, Jamia Millia Islamia, New Delhi , India.
Muniba
M
Faiza
Department of Botany,Dyal Singh College, University of Delhi, New Delhi - 110003, India.
Prashant
P
Pant
R & D Division, UTL Inverters Pvt. Ltd., New Delhi, - 110025,India.
Mohd
M
Rayyan Akhtar
Department of Botany, Daulat Ram College, University of Delhi, New Delhi, India.
Pratibha
P
Pant
Mutation; codon; genetic code; point mutation; single base substitutions or single nucleotide substitutions