admixturegraph: an R package for admixture graph manipulation and fitting.
CONCLUSIONS
Admixture graphs generalize phylogenetic trees by allowing genetic lineages to merge as well as split. In this paper we present the R package admixturegraph containing tools for building and visualizing admixture graphs, for fitting graph parameters to genetic data, for visualizing goodness of fit and for evaluating the relative goodness of fit between different graphs.


METHODS
GitHub: https://github.com/mailund/admixture_graph and CRAN: https://cran.r-project.org/web/packages/admixturegraph .


BACKGROUND
mailund@birc.au.dk .
Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.
Kalle
K
Leppälä
Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.
Svend V
SV
Nielsen
Bioinformatics Research Centre, Aarhus University, Aarhus, Denmark.
Thomas
T
Mailund
D000818:Animals; D005828:Genetics, Population / Q000379:methods*; D006801:Humans; D010802:Phylogeny; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software