Complete genome sequence ofJiangella gansuensisstrain YIM 002T(DSM 44835T), the type species of the genusJiangellaand source of new antibiotic compounds.
Jiangella gansuensisstrain YIM 002Tis the type strain of the type species of the genusJiangella, which is at the present time composed of five species, and was isolated from desert soil sample in Gansu Province (China). The five strains of this genus are clustered in a monophyletic group when closer actinobacterial genera are used to infer a 16S rRNA gene sequence phylogeny. The study of this genome is part of theGenomicEncyclopedia ofBacteria andArchaeaproject, and here we describe the complete genome sequence and annotation of this taxon. The genome ofJ. gansuensisstrain YIM 002Tcontains a single scaffold of size 5,585,780 bp, which involves 149 pseudogenes, 4905 protein-coding genes and 50 RNA genes, including 2520 hypothetical proteins and 4 rRNA genes. From the investigation of genome sizes ofJiangellaspecies,J. gansuensisshows a smaller size, which indicates this strain might have discarded too much genetic information to adapt to desert environment. Seven new compounds from this bacterium have recently been described; however, its potential should be higher, as secondary metabolite gene cluster analysis predicted 60 gene clusters, including the potential to produce the pristinamycin.
State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, College of Life Science, Sun Yat-Sen University, Guangzhou, China.
Jian-Yu
JY
Jiao
School of Biology, Newcastle University, Newcastle upon Tyne, UK.
Lorena
L
Carro
State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, College of Life Science, Sun Yat-Sen University, Guangzhou, China.
Lan
L
Liu
Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Science, Yunnan Province, China.
Xiao-Yang
XY
Gao
State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, College of Life Science, Sun Yat-Sen University, Guangzhou, China.
Xiao-Tong
XT
Zhang
Bioproducts Research Chair (BRC), College of Science, King Saud University, Riyadh, Kingdom of Saudi Arabia.|Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt.
Wael N
WN
Hozzein
Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA.|Center for Algorithmic Biotechnology, St. Petersburg State University, St. Petersburg, Russia.
Alla
A
Lapidus
DOE Joint Genome Institute, Walnut Creek, CA USA.
Marcel
M
Huntemann
DOE Joint Genome Institute, Walnut Creek, CA USA.
T B K
TBK
Reddy
DOE Joint Genome Institute, Walnut Creek, CA USA.
Neha
N
Varghese
DOE Joint Genome Institute, Walnut Creek, CA USA.
Michalis
M
Hadjithomas
DOE Joint Genome Institute, Walnut Creek, CA USA.
Natalia N
NN
Ivanova
Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Markus
M
Göker
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA USA.
Manoj
M
Pillay
University of California, Davis, CA USA.
Jonathan A
JA
Eisen
DOE Joint Genome Institute, Walnut Creek, CA USA.
Tanja
T
Woyke
School of Biology, Newcastle University, Newcastle upon Tyne, UK.|Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Hans-Peter
HP
Klenk
DOE Joint Genome Institute, Walnut Creek, CA USA.|Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Nikos C
NC
Kyrpides
State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, College of Life Science, Sun Yat-Sen University, Guangzhou, China.|Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China.
Wen-Jun
WJ
Li
Desert; GEBA; Genome; Jiangella gansuensis; Jiangellales; Taxonomic comments