Evaluation of Systematic Position of Helicoprorodontids and Chaeneids (Ciliophora, Litostomatea): An Attempt to Break Long Branches in 18S rRNA Gene Phylogenies.
Phylogenetic position of some free-living litostomatean taxa has not been correctly determined because of long-branch artifacts in 18S rRNA gene trees. The main aim of this study was to test the effectiveness of various masking algorithms, tree-building techniques, binarization of DNA data as well as combining morphological and molecular data to eliminate long-branch attraction of two problematic groups, helicoprorodontids and chaeneids. Guidance and SlowFaster masking in a combination with PhyloBayesian tree construction erased the artifactual positions of helicoprorodontids and chaeneids. On the other hand, binarization of DNA sequences and the strategy of combining morphological and molecular data eliminated only the artifactual position of chaeneids but not that of helicoprorodontids which were still being attracted by out-group taxa. According to statistical tree topology tests and comparative morphological studies, helicoprorodontids are classified as a distinct order while chaeneids are considered to be fast evolving members of the order Lacrymariida. The high body contractility, "cephalization" of the anterior body end, and helicalization of the anterior portion of some or all somatic ciliary rows indicate relatedness of helicoprorodontids, chaeneids, and lacrymariids. On the other hand, the dorsal brush separated from the circumoral kinety by dense ciliary files supports kinships of chaeneids, lacrymariids, and didiniids.
Department of Zoology, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, Bratislava, SK-842 15, Slovak Republic.
Peter
0000-0003-4877-0234
P
Vďačný
Department of Zoology, Faculty of Natural Sciences, Comenius University in Bratislava, Ilkovičova 6, Bratislava, SK-842 15, Slovak Republic.
Matej
M
Rataj
D000465:Algorithms; D001499:Bayes Theorem; D016798:Ciliophora / Q000145:classification*; D016054:DNA, Protozoan / Q000235:genetics; D020459:Genes, rRNA; D010802:Phylogeny; D012337:RNA, Ribosomal, 18S / Q000235:genetics*; D017422:Sequence Analysis, DNA / Q000379:methods*
D016054:DNA, Protozoan; D012337:RNA, Ribosomal, 18S
Alignment masking; Chaenea; Helicoprorodontida; Trachelotractus; data binarization; mutational saturation; split spectrum