"Big Data" for Breast Cancer: Where to look and what you will find.
Accessing the massive amount of breast cancer data that is currently publically available may seem daunting to the brand new graduate student embarking on his/her first project or even to the seasoned lab leader, who may wish to explore a new avenue of investigation. In this review, we provide an overview of data resources focusing on high-throughput data and on cancer-related data resources. While not intended as an exhaustive list, the information included in this review will provide a jumping off point with descriptions of and links to the various data resources of interest. The review is divided into six sections: (1) Compendia of data resources; (2) Biomolecular Repository "Hubs"' (3) A list of cancer-related data resources, which provides information on contents of the resource and whether the resource enables upload and analysis of investigator provided data; (4) A list of seminal publications containing specific breast cancer data, e.g., publications from METBRIC, Sanger, TCGA; (5) A list of journals focused on data science that include cancer-related "Big Data"; and (6) Miscellaneous resources.
Department of Surgery, Feinberg School of Medicine, Northwestern University, 303 E. Superior Street, Lurie 4-113, Chicago, IL 60611.
Susan E
SE
Clare
Biosciences & Bioinformatics Librarian, NIH Public Access Compliance Reporter (PACR), Galter Health Sciences Library, Feinberg School of Medicine, Northwestern University, 303 E. Chicago Ave., Room 1-285, Chicago, IL 60611.
Pamela L
PL
Shaw