TrypsNetDB: An integrated framework for the functional characterization of trypanosomatid proteins.
Trypanosomatid parasites cause serious infections in humans and production losses in livestock. Due to the high divergence from other eukaryotes, such as humans and model organisms, the functional roles of many trypanosomatid proteins cannot be predicted by homology-based methods, rendering a significant portion of their proteins as uncharacterized. Recent technological advances have led to the availability of multiple systematic and genome-wide datasets on trypanosomatid parasites that are informative regarding the biological role(s) of their proteins. Here, we report TrypsNetDB (http://trypsNetDB.org), a web-based resource for the functional annotation of 16 different species/strains of trypanosomatid parasites. The database not only visualizes the network context of the queried protein(s) in an intuitive way but also examines the response of the represented network in more than 50 different biological contexts and its enrichment for various biological terms and pathways, protein sequence signatures, and potential RNA regulatory elements. The interactome core of the database, as of Jan 23, 2017, contains 101,187 interactions among 13,395 trypanosomatid proteins inferred from 97 genome-wide and focused studies on the interactome of these organisms.
Institute of Parasitology, McGill University, Ste. Anne de Bellevue, Quebec, Canada.
Vahid H
VH
Gazestani
Institute of Parasitology, McGill University, Ste. Anne de Bellevue, Quebec, Canada.
Chun Wai
CW
Yip
Institute of Parasitology, McGill University, Ste. Anne de Bellevue, Quebec, Canada.
Najmeh
N
Nikpour
Institute of Parasitology, McGill University, Ste. Anne de Bellevue, Quebec, Canada.
Natasha
N
Berghuis
Institute of Parasitology, McGill University, Ste. Anne de Bellevue, Quebec, Canada.
Reza
0000-0003-0501-7090
R
Salavati
D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D058977:Molecular Sequence Annotation; D060066:Protein Interaction Maps; D015800:Protozoan Proteins / Q000235:genetics* / Q000378:metabolism*; D014351:Trypanosomatina / Q000235:genetics*
D015800:Protozoan Proteins