title: Surface-assisted DNA self-assembly: An enzyme-free strategy towards formation of branched DNA lattice.
abstract: DNA based self-assembled nanostructures and DNA origami has proven useful for organizing nanomaterials with firm precision. However, for advanced applications like nanoelectronics and photonics, large-scale organization of self-assembled branched DNA (bDNA) into periodic lattices is desired. In this communication for the first time we report a facile method of self-assembly of Y-shaped bDNA nanostructures on the cationic surface of Aluminum (Al) foil to prepare periodic two dimensional (2D) bDNA lattice. Particularly those Y-shaped bDNA structures having smaller overhangs and unable to self-assemble in solution, they are easily assembled on the surface of Al foil in the absence of ligase. Field emission scanning electron microscopy (FESEM) analysis shows homogenous distribution of two-dimensional bDNA lattices across the Al foil. When the assembled bDNA structures were recovered from the Al foil and electrophoresed in nPAGE only higher order polymeric bDNA structures were observed without a trace of monomeric structures which confirms the stability and high yield of the bDNA lattices. Therefore, this enzyme-free economic and efficient strategy for developing bDNA lattices can be utilized in assembling various nanomaterials for functional molecular components towards development of DNA based self-assembled nanodevices.
authors.affiliation: DNA Nanotechnology & Application Laboratory, CSIR-Institute of Minerals and Materials Technology, Bhubaneswar, 751013, India; Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India.
authors.forename: Madhabi M
authors.initials: MM
authors.lastname: Bhanjadeo
authors.affiliation: DNA Nanotechnology & Application Laboratory, CSIR-Institute of Minerals and Materials Technology, Bhubaneswar, 751013, India.
authors.forename: Ashok K
authors.initials: AK
authors.lastname: Nayak
authors.affiliation: DNA Nanotechnology & Application Laboratory, CSIR-Institute of Minerals and Materials Technology, Bhubaneswar, 751013, India; Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India. Electronic address: usubudhi@immt.res.in.
authors.forename: Umakanta
authors.initials: U
authors.lastname: Subudhi
mesh_terms: D001483:Base Sequence; D002412:Cations / Q000737:chemistry; D004247:DNA / Q000737:chemistry* / Q000235:genetics / Q000648:ultrastructure; D059371:DNA, B-Form / Q000737:chemistry* / Q000235:genetics / Q000648:ultrastructure; D004591:Electrophoresis, Polyacrylamide Gel; D008855:Microscopy, Electron, Scanning; D008958:Models, Molecular; D049329:Nanostructures / Q000737:chemistry* / Q000648:ultrastructure; D036103:Nanotechnology / Q000379:methods; D009690:Nucleic Acid Conformation; D009841:Oligonucleotides / Q000737:chemistry / Q000235:genetics; D013499:Surface Properties
chemical_list: D002412:Cations; D059371:DNA, B-Form; D009841:Oligonucleotides; D004247:DNA
keywords: Aluminum foil; DNA lattice; DNA nanotechnology; Nanoelectronics; Self-assembly; Y- shaped DNA