title: Complete mitochondrial genomes of prasinophyte algae Pyramimonas parkeae and Cymbomonas tetramitiformis.
abstract: Mitochondria are archetypal eukaryotic organelles that were acquired by endosymbiosis of an ancient species of alpha-proteobacteria by the last eukaryotic common ancestor. The genetic information contained within the mitochondrial genome has been an important source of information for resolving relationships among eukaryotic taxa. In this study, we utilized mitochondrial and chloroplast genomes to explore relationships among prasinophytes. Prasinophytes are represented by diverse early-diverging green algae whose physical structures and genomes have the potential to elucidate the traits of the last common ancestor of the Viridiplantae (or Chloroplastida). We constructed de novo mitochondrial genomes for two prasinophyte algal species, Pyramimonas parkeae and Cymbomonas tetramitiformis, representing the prasinophyte clade. Comparisons of genome structure and gene order between these species and to those of other prasinophytes revealed that the mitochondrial genomes of P. parkeae and C. tetramitiformis are more similar to each other than to other prasinophytes, consistent with other molecular inferences of the close relationship between these two species. Phylogenetic analyses using the inferred amino acid sequences of mitochondrial and chloroplast protein-coding genes resolved a clade consisting of P. parkeae and C. tetramitiformis; and this group (representing the prasinophyte clade I) branched with the clade II, consistent with previous studies based on the use of nuclear gene markers.
authors.affiliation: Department of Botany, University of Wisconsin-Madison, 430 Lincoln drive, Madison, Wisconsin, USA.
authors.forename: Anchittha
authors.initials: A
authors.lastname: Satjarak
authors.affiliation: Division of Invertebrate Zoology and Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, New York, USA.
authors.forename: John A
authors.initials: JA
authors.lastname: Burns
authors.affiliation: Division of Invertebrate Zoology and Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, New York, USA.
authors.forename: Eunsoo
authors.initials: E
authors.lastname: Kim
authors.affiliation: Department of Botany, University of Wisconsin-Madison, 430 Lincoln drive, Madison, Wisconsin, USA.
authors.forename: Linda E
authors.initials: LE
authors.lastname: Graham
mesh_terms: D000460:Chlorophyta / Q000145:classification / Q000235:genetics*; D048028:DNA, Algal / Q000235:genetics*; D054628:Genome, Chloroplast; D054629:Genome, Mitochondrial; D010802:Phylogeny; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA
chemical_list: D048028:DNA, Algal
keywords: 
  Cymbomonas tetramitiformis
  ; 
  Pyramimonas parkeae
  ; mitochondrial genome; prasinophyte