title: Biocomplexity and Fractality in the Search of Biomarkers of Aging and Pathology: Focus on Mitochondrial DNA and Alzheimer's Disease.
abstract: Alzheimer's disease (AD) represents one major health concern for our growing elderly population. It accounts for increasing impairment of cognitive capacity followed by loss of executive function in late stage. AD pathogenesis is multifaceted and difficult to pinpoint, and understanding AD etiology will be critical to effectively diagnose and treat the disease. An interesting hypothesis concerning AD development postulates a cause-effect relationship between accumulation of mitochondrial DNA (mtDNA) mutations and neurodegenerative changes associated with this pathology. Here we propose a computerized method for an easy and fast mtDNA mutations-based characterization of AD. The method has been built taking into account the complexity of living being and fractal properties of many anatomic and physiologic structures, including mtDNA. Dealing with mtDNA mutations as gaps in the nucleotide sequence, fractal lacunarity appears a suitable tool to differentiate between aging and AD. Therefore, Chaos Game Representation method has been used to display DNA fractal properties after adapting the algorithm to visualize also heteroplasmic mutations. Parameter β from our fractal lacunarity method, based on hyperbola model function, has been measured to quantitatively characterize AD on the basis of mtDNA mutations. Results from this pilot study to develop the method show that fractal lacunarity parameter β of mtDNA is statistically different in AD patients when compared to age-matched controls. Fractal lacunarity analysis represents a useful tool to analyze mtDNA mutations. Lacunarity parameter β is able to characterize individual mutation profile of mitochondrial genome and appears a promising index to discriminate between AD and aging.
authors.affiliation: 1Laboratory of Bioinformatics, Bioengineering and Domotics, Italian National Research Center on Aging - INRCA, via Birarelli 8, 60121 Ancona, Italy.
authors.forename: Annamaria
authors.initials: A
authors.lastname: Zaia
authors.affiliation: 2School of Science and Technology, University of Camerino, via Madonna delle Carceri 9, 62032 Camerino (MC), Italy.
authors.forename: Pierluigi
authors.initials: P
authors.lastname: Maponi
authors.affiliation: 3Research, Innovation and Technology Transfer Office, Italian National Research Center on Aging - INRCA, via Birarelli 8, 60121 Ancona, Italy.
authors.forename: Giuseppina
authors.initials: G
authors.lastname: Di Stefano
authors.affiliation: 4Scientific and Technological Area, Italian National Research Center on Aging - INRCA, via Birarelli 8, 60121 Ancona, Italy.
authors.forename: Tiziana
authors.initials: T
authors.lastname: Casoli
keywords: Aging; Alzheimer’s disease; Biocomplexity; Chaos Game Representation; Fractal lacunarity; mtDNA