title: A Comparison of Rosetta Stones in Adapter Protein Families.
abstract: The inventory of proteins used in different kingdoms appears surprisingly similar in all sequenced eukaryotic genome. Protein domains represent the basic evolutionary units that form proteins. Domain duplication and shuffling by recombination are probably the most important forces driving protein evolution and hence the complexity of the proteome. While the duplication of whole genes as well as domain encoding exons increases the abundance of domains in the proteome, domain shuffling increases versatility, i.e. the number of distinct contexts in which a domain can occur. In this study we considered five important adapter domain families namely WD40, KELCH, Ankyrin, PDZ and Pleckstrin Homology (PH domain) family for the comparison of Domain versatility, Abundance and domain sharing between them. We used ecological statistics methods such as Jaccard's Similarity Index (JSI), Detrended Correspondence Analysis, k-Means clustering for the domain distribution data. We found high propensity of domain sharing between PH and PDZ. We found higher abundance of only few selected domains in PH, PDZ, ANK and KELCH families. We also found WD40 family with high versatility and less redundant domain occurrence, with less domain sharing. Hence, the assignments of functions to more orphan WD40 proteins that will help in the identification of suitable drug targets.
authors.affiliation: Department of Biotechnology and Bioinformatics, Kuvempu University, Shankaraghatta - 577451, Karnataka, India.
authors.forename: Hulikal Shivashankara Santosh
authors.initials: HS
authors.lastname: Kumar
authors.affiliation: Department of Biochemistry, Davanagere University, Shivagangothri, Davanagere - 577002, Karnataka, India.
authors.forename: Vadlapudi
authors.initials: V
authors.lastname: Kumar
keywords: Rosetta Stones; WD40; detrended correspondence analysis; domain sharing; domain versatility