title: Production of Human ATG Proteins for Lipidation Assays.
abstract: Humans express several orthologs of yeast Atg8, in the LC3 and GABARAP families, which play crucial roles in autophagy through their covalent ligation to lipids, typically phosphatidylethanolamine (PE), in a process known as lipidation. Lipidation of LC3 and GABARAP regulates numerous facets of the autophagy process, including regulating expansion of the phagophore membrane, recruiting selected cargoes for degradation, and providing an autophagosome membrane-bound platform mediating dynamic interactions with other regulatory proteins. LC3 and GABARAP are families of related ubiquitin-like proteins (UBLs) (referred to here collectively as LC3/GABARAP), and their lipidation involves a divergent UBL conjugation cascade including ATG7, ATG3, and ATG12~ATG5-ATG16L1 acting as E1, E2, and E3 enzymes, respectively. ATG7 initiates LC3/GABARAP conjugation by catalyzing their C-terminal adenylation and conjugation to the catalytic cysteine of ATG3. Ultimately, the ATG12~ATG5-ATG16L1 complex catalyzes LC3/GABARAP ligation to a primary amino group on PE or other acceptor lipids. This chapter describes methods for expressing and purifying human LC3 or GABARAP, ATG7, ATG3, and the ATG12~ATG5-ATG16L1 complex for in vitro studies of LC3/GABARAP lipidation.
authors.affiliation: St. Jude Children's Research Hospital, Memphis, TN, United States; University of Tennessee Health Science Center, Memphis, TN, United States.
authors.forename: Y
authors.initials: Y
authors.lastname: Zheng
authors.affiliation: St. Jude Children's Research Hospital, Memphis, TN, United States.
authors.forename: Y
authors.initials: Y
authors.lastname: Qiu
authors.affiliation: St. Jude Children's Research Hospital, Memphis, TN, United States; Hendrix College, Conway, AR, United States.
authors.forename: J E C
authors.initials: JE
authors.lastname: Gunderson
authors.affiliation: St. Jude Children's Research Hospital, Memphis, TN, United States; University of Tennessee Health Science Center, Memphis, TN, United States; Howard Hughes Medical Institute, St. Jude Children's Research Hospital, Memphis, TN United States. Electronic address: brenda.schulman@stjude.org.
authors.forename: B A
authors.initials: BA
authors.lastname: Schulman
mesh_terms: D000071183:Autophagy-Related Proteins / Q000235:genetics / Q000302:isolation & purification* / Q000378:metabolism*; D006801:Humans; D008869:Microtubule-Associated Proteins / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism; D008967:Molecular Biology / Q000379:methods*; D015202:Protein Engineering / Q000379:methods
chemical_list: C518959:ATG16L1 protein, human; D000071183:Autophagy-Related Proteins; C502070:MAP1LC3B protein, human; D008869:Microtubule-Associated Proteins
keywords: Autophagy; Lipidation; Protein expression; Protein purification; Ubiquitin-like protein