title: Genetic structure of a regionally endangered orchid, the dark red helleborine (Epipactis atrorubens) at the edge of its distribution.
abstract: The genetic structure and diversity of species is determined by both current population dynamics and historical processes. Population genetic structure at the edge of the distribution is often expected to differ substantially from populations at the centre, as these edge populations are often small and fragmented. In addition, populations located in regions that have experienced repeated glaciations throughout the Pleistocene, may still carry imprints from the genetic consequences of frequent distribution shifts. Using chloroplast DNA sequences and nuclear microsatellite markers we studied the genetic structure of Epipactis atrorubens at the northern edge of its distribution. Contrary to populations in the centre of the distribution, populations at the northern range are regionally endangered as they are small and disjunct. Sequence data of 2 chloroplast loci and allelic data from 6 nuclear microsatellite markers were obtained from 297 samples from Finland, Estonia and Russia. We sought for genetic indicators of past population processes, such as post-glacial colonisation history of E. atrorubens. As expected, we observed low genetic variation, in terms of numbers of substitutions, haplotypes and alleles, and significant levels of differentiation, especially pronounced in the chloroplast DNA. These features suggest that the edge populations could be prone to extinction.
authors.affiliation: Department of Ecology and Genetics, University of Oulu, P.O. Box 3000, 90014, Oulu, Finland. hilde.hens@oulu.fi.|Thule Institute, University of Oulu, P.O. Box 7300, 90014, Oulu, Finland. hilde.hens@oulu.fi.
authors.forename: Hilde
authors.initials: H
authors.lastname: Hens
authors.affiliation: Thule Institute, Oulanka Research Station, Liikasenvaarantie 134, 93999, Kuusamo, Finland.
authors.forename: Anne
authors.initials: A
authors.lastname: Jäkäläniemi
authors.affiliation: Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 5, 51014, Tartu, Estonia.
authors.forename: Kadri
authors.initials: K
authors.lastname: Tali
authors.affiliation: Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov Str. 2, St. Petersburg, 197376, Russia.
authors.forename: Petr
authors.initials: P
authors.lastname: Efimov
authors.affiliation: Karelian Research Centre of the Russian Academy of Science, Pushkinskaya St. 11, Petrozavodsk, 185910, Russia.
authors.forename: Alexey V
authors.initials: AV
authors.lastname: Kravchenko
authors.affiliation: Department of Ecology and Genetics, University of Oulu, P.O. Box 3000, 90014, Oulu, Finland.
authors.forename: Laura
authors.initials: L
authors.lastname: Kvist
mesh_terms: D000818:Animals; D001208:Asia; D002467:Cell Nucleus / Q000235:genetics; D018742:DNA, Chloroplast / Q000737:chemistry / Q000235:genetics*; D056727:Endangered Species; D005060:Europe; D005787:Gene Frequency; D061125:Genes, Chloroplast / Q000235:genetics*; D014644:Genetic Variation; D005828:Genetics, Population; D005843:Geography; D006239:Haplotypes; D018895:Microsatellite Repeats / Q000235:genetics*; D029595:Orchidaceae / Q000145:classification / Q000235:genetics*; D010802:Phylogeny; D011157:Population Dynamics; D012426:Russia; D017422:Sequence Analysis, DNA
chemical_list: D018742:DNA, Chloroplast
keywords: Genetic diversity; Microsatellites; Population differentiation; rbcL-accD intergenic spacer; trnK