title: Phylogeography and genetic structure of the oriental river prawn Macrobrachium nipponense (Crustacea: Decapoda: Palaemonidae) in East Asia.
abstract: The oriental river prawn (Macrobrachium nipponense) is mainly distributed in East Asia. The phylogeography, population genetic structure and historical demography of this species in the East Asia were examined by using partial sequences of the cytochrome oxidase subunit I (COI) and 16S rRNA in mitochondrial DNA. Ten populations that included 239 individuals were collected from Taiwan (Shihmen Reservoir, SMR, Mingte Reservoir, MTR and Chengching Lake Reservoir, CLR), mainland China (Taihu Lake, TLC, Min River, MRC, Jiulong River, JRC and Shenzhen Reservoir, SRC), Japan (Biwa Lake, BLJ and Kasumigaura Lake, KLJ) and Korea (Han River, HRK). The nucleotide diversity (π) of all individuals was 0.01134, with values ranging from 0.0089 (BLJ, Japan) to 0.01425 (MTR, Taiwan). A total of 83 haplotypes were obtained, and the haplotypes were divided into 2 main lineages: lineage A included the specimens from BLJ, KLJ, CLR, MTR, TLC, MRC and JRC, and lineage B comprised the ones from HRK, SRC, SMR, MTR, TLC, MRC and JRC. Lineage A could be further divided two sub-lineages (A1 and A2). Individuals of lineage A2 were only from TLC. Demographic expansion was observed in each lineage, starting within the second-to-latest interglacial period for lineage A and within the last glacial period for lineage B. All FST values among the ten populations were significantly different, except for the values between MRC and JRC, and SMR and SRC. The phylogeography and genetic structure of M. nipponense in East Asia might be influenced by Pleistocene glacial cycles, lake isolation and human introduction. The possible dispersal routes of M. nipponense in the East Asia were also discussed.
authors.affiliation: Institute of Fisheries Science, College of Life Science, National Taiwan University, Taipei, Taiwan.
authors.forename: Po-Cheng
authors.initials: PC
authors.lastname: Chen
authors.affiliation: Department of Leisure Management, Tungnan University, New Taipei City, Taiwan.
authors.forename: Chun-Han
authors.initials: CH
authors.lastname: Shih
authors.affiliation: Department of Leisure and Recreation Management, Chung Hua University, Hsin Chu, Taiwan.
authors.forename: Ta-Jen
authors.initials: TJ
authors.lastname: Chu
authors.affiliation: Institute of Fisheries Science, College of Life Science, National Taiwan University, Taipei, Taiwan.
authors.forename: Ying-Chou
authors.initials: YC
authors.lastname: Lee
authors.affiliation: Department of Leisure, Recreation and Tourism Management, Shu-Te University, Kaohsiung, Taiwan.
authors.forename: Tzong-Der
authors.identifier: http://orcid.org/0000-0001-6529-3586
authors.initials: TD
authors.lastname: Tzeng
mesh_terms: D000818:Animals; D016000:Cluster Analysis; D004272:DNA, Mitochondrial; D005202:Asia, Eastern; D014644:Genetic Variation; D005828:Genetics, Population; D005838:Genotype; D006239:Haplotypes; D033541:Palaemonidae / Q000145:classification* / Q000235:genetics*; D010802:Phylogeny; D058974:Phylogeography; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D004272:DNA, Mitochondrial; D012336:RNA, Ribosomal, 16S