title: Dynamic Multicore Processing for Pandemic Influenza Simulation.
abstract: Pandemic simulation is a useful tool for analyzing outbreaks and exploring the impact of variations in disease, population, and intervention models. Unfortunately, this type of simulation can be quite time-consuming especially for large models and significant outbreaks, which makes it difficult to run the simulations interactively and to use simulation for decision support during ongoing outbreaks. Improved run-time performance enables new applications of pandemic simulations, and can potentially allow decision makers to explore different scenarios and intervention effects. Parallelization of infection-probability calculations and multicore architectures can take advantage of modern processors to achieve significant run-time performance improvements. However, because of the varying computational load during each simulation run, which originates from the changing number of infectious persons during the outbreak, it is not useful to us the same multicore setup during the simulation run. The best performance can be achieved by dynamically changing the use of the available processor cores to balance the overhead of multithreading with the performance gains of parallelization.
authors.affiliation: Dept. of Comp. and Inform. Sci., Linköping University, Sweden.
authors.forename: Henrik
authors.initials: H
authors.lastname: Eriksson
authors.affiliation: Dept. of Comp. and Inform. Sci., Linköping University, Sweden;; Dept. of Medical and Health Sci., Linköping University, Sweden.
authors.forename: Toomas
authors.initials: T
authors.lastname: Timpka
authors.affiliation: Dept. of Medical and Health Sci., Linköping University, Sweden.
authors.forename: Armin
authors.initials: A
authors.lastname: Spreco
authors.affiliation: Dept. of Medical and Health Sci., Linköping University, Sweden.
authors.forename: Örjan
authors.initials: Ö
authors.lastname: Dahlström
authors.affiliation: Dept. of Social and Economic Geography, Umeå University, Umeå, Sweden.
authors.forename: Magnus
authors.initials: M
authors.lastname: Strömgren
authors.affiliation: Dept. of Social and Economic Geography, Umeå University, Umeå, Sweden.
authors.forename: Einar
authors.initials: E
authors.lastname: Holm
mesh_terms: D003198:Computer Simulation; D006801:Humans; D007251:Influenza, Human / Q000453:epidemiology*; D008954:Models, Biological; D058873:Pandemics; D012984:Software