title: Standardized Representation of Clinical Study Data Dictionaries with CIMI Archetypes.
abstract: Researchers commonly use a tabular format to describe and represent clinical study data. The lack of standardization of data dictionary's metadata elements presents challenges for their harmonization for similar studies and impedes interoperability outside the local context. We propose that representing data dictionaries in the form of standardized archetypes can help to overcome this problem. The Archetype Modeling Language (AML) as developed by the Clinical Information Modeling Initiative (CIMI) can serve as a common format for the representation of data dictionary models. We mapped three different data dictionaries (identified from dbGAP, PheKB and TCGA) onto AML archetypes by aligning dictionary variable definitions with the AML archetype elements. The near complete alignment of data dictionaries helped map them into valid AML models that captured all data dictionary model metadata. The outcome of the work would help subject matter experts harmonize data models for quality, semantic interoperability and better downstream data integration.
authors.affiliation: Mayo Clinic College of Medicine, Rochester, MN.
authors.forename: Deepak K
authors.initials: DK
authors.lastname: Sharma
authors.affiliation: Mayo Clinic College of Medicine, Rochester, MN.
authors.forename: Harold R
authors.initials: HR
authors.lastname: Solbrig
authors.affiliation: W3C/MIT, Boston, MA.
authors.forename: Eric
authors.initials: E
authors.lastname: Prud'hommeaux
authors.affiliation: Weill Cornell Medical College, New York, NY.
authors.forename: Jyotishman
authors.initials: J
authors.lastname: Pathak
authors.affiliation: Mayo Clinic College of Medicine, Rochester, MN.
authors.forename: Guoqian
authors.initials: G
authors.lastname: Jiang
mesh_terms: D035843:Biomedical Research / Q000592:standards*; D016208:Databases, Factual / Q000592:standards*; D000071253:Metadata / Q000592:standards*; D012984:Software