title: Deciphering the Molecular Effects of Mutations on ATRX Cause ATRX Syndrome: A Molecular Dynamics Study.
abstract: α-thalassemia mental retardation X-linked (ATRX) syndrome is caused by the dysfunction of ATRFfigX protein. The present study explored the structural consequences influenced by two observed mutations V194I and C220R on ADD domain of ATRX protein by applying all atom molecular dynamics (MD) simulation. MD result showed that both the mutants exhibited wide variations in their backbone dynamics, as a result, mutant V210I showed complete distortion on α3 and the mutant C220R displayed a biased disruption on α2-3. The interference in the local folding of α-helices in both the mutants resulted by the loss of hydrogen bonds mediated by the backbone atoms. Principle component analysis (PCA) elucidated that both the mutants endured a diverse conformational dynamics, consequently adopted thermodynamically different conformational state. Besides, binding residues in both the mutants showed more structural disorder, thereby unable to recognize the hallmark modification, K9me3 (tri-methylated lysine at position 9) of histone H3 peptide and it was not conducive for the wild type ADD domain like functionality. Altogether, our findings provide knowledge to understand the structural and functional relationship of disease-associated mutations, V194I and C220R on ADD domain as well as gain further insights into the molecular pathogenesis of ATRX syndrome. J. Cell. Biochem. 118: 3318-3327, 2017. © 2017 Wiley Periodicals, Inc.
authors.affiliation: Department of Biotechnology, Bioinformatics Lab, School of Biosciences and Technology, VIT University, Vellore, 632014, Tamil Nadu, India.
authors.forename: Chandrasekaran
authors.initials: C
authors.lastname: Palaniappan
authors.affiliation: Department of Biotechnology, Bioinformatics Lab, School of Biosciences and Technology, VIT University, Vellore, 632014, Tamil Nadu, India.
authors.forename: Rajasekaran
authors.identifier: 0000-0001-8734-3556
authors.initials: R
authors.lastname: Ramalingam
mesh_terms: D019943:Amino Acid Substitution; D006801:Humans; D038901:X-Linked Intellectual Disability; D056004:Molecular Dynamics Simulation; D020125:Mutation, Missense; D000072417:Protein Domains; D017433:Protein Structure, Secondary; D013329:Structure-Activity Relationship; D000075924:X-linked Nuclear Protein / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D017085:alpha-Thalassemia
chemical_list: C092332:ATRX protein, human; D000075924:X-linked Nuclear Protein
keywords: ADD DOMAIN; ATRX; H3K9me3; PRINCIPAL COMPONENT ANALYSIS