MRF-ANN: a machine learning approach for automated ER scoring of breast cancer immunohistochemical images.
Molecular pathology, especially immunohistochemistry, plays an important role in evaluating hormone receptor status along with diagnosis of breast cancer. Time-consumption and inter-/intraobserver variability are major hindrances for evaluating the receptor score. In view of this, the paper proposes an automated Allred Scoring methodology for estrogen receptor (ER). White balancing is used to normalize the colour image taking into consideration colour variation during staining in different labs. Markov random field model with expectation-maximization optimization is employed to segment the ER cells. The proposed segmentation methodology is found to have F-measure 0.95. Artificial neural network is subsequently used to obtain intensity-based score for ER cells, from pixel colour intensity features. Simultaneously, proportion score - percentage of ER positive cells is computed via cell counting. The final ER score is computed by adding intensity and proportion scores - a standard Allred scoring system followed by pathologists. The classification accuracy for classification of cells by classifier in terms of F-measure is 0.9626. The problem of subjective interobserver ability is addressed by quantifying ER score from two expert pathologist and proposed methodology. The intraclass correlation achieved is greater than 0.90. The study has potential advantage of assisting pathologist in decision making over manual procedure and could evolve as a part of automated decision support system with other receptor scoring/analysis procedure.
School of Medical Science & Technology, IIT Kharagpur, West Bengal, India.
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Mungle
School of Medical Science & Technology, IIT Kharagpur, West Bengal, India.
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Tewary
School of Medical Science & Technology, IIT Kharagpur, West Bengal, India.
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Das
Tata Medical Center, Kolkata, West Bengal, India.
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Arun
Tata Medical Center, Kolkata, West Bengal, India.
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Basak
Tata Medical Center, Kolkata, West Bengal, India.
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Agarwal
Tata Medical Center, Kolkata, West Bengal, India.
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Ahmed
Tata Medical Center, Kolkata, West Bengal, India.
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Chatterjee
School of Medical Science & Technology, IIT Kharagpur, West Bengal, India.
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Chakraborty
D057205:Automation, Laboratory / Q000379:methods*; D014408:Biomarkers, Tumor / Q000032:analysis*; D001943:Breast Neoplasms / Q000175:diagnosis*; D005260:Female; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D007150:Immunohistochemistry / Q000379:methods*; D000069550:Machine Learning; D016571:Neural Networks, Computer; D011960:Receptors, Estrogen / Q000032:analysis*
D014408:Biomarkers, Tumor; D011960:Receptors, Estrogen
Artificial neural network; ER score; Markov random field; breast cancer; immunohistochemistry