Understanding the conservation patterns and molecular phylogenetics of human death receptors family through computational biology.
Human death receptors (TNFR1, FAS, DR3, DR4, DR5, DR6 and TNFBR), primarily from tumor necrosis receptor super family, play an essential role in the process of the extrinsic pathway of apoptosis. We performed conserved domain, amino acid residues analysis in which cysteine residues were found to be highly conserved for all the family members. Sixteen (16) highly conserved residues were observed in TNFR1, DR3 and TNFBR; and in case of Fas, only seven (7) residues are highly conserved. From molecular phylogenetics, we found that DR5 and DR4, TNFR1 and DR3 and TNFR1 and DR3 had the same point of origin. Alternatively, Fas was found to be distant from the rest of the death receptors. A network map was developed to explain these proteins are not only interlinked among themselves, but also interlinked with several other proteins. We have also observed from this system that scores of all the nodes ranges from 0.996 to 0.999.
Biotechnology Department, IILM Academy of Higher Learning, Knowledge Park, Greater Noida, UP, India.
Jinny
J
Tomar
Department of Bio-informatics, School of Computer and Information Sciences, Galgotias University, Greater Noida, India. drchiranjib@yahoo.com.
Chiranjib
C
Chakraborty
Medical Biotechnology Division, School of Biosciences and Technology, VIT University, Vellore, 632014, Tamil Nadu, India. georgecp77@yahoo.co.in.
C George Priya
CG
Doss
Biotechnology Department, IILM Academy of Higher Learning, Knowledge Park, Greater Noida, UP, India.
V K
VK
Gera
Computational biology; Conservation patterns; Molecular phylogenetics; Multiple sequences alignment; Sequence logos